Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04833 and MPMX19_04834 overlap by 4 nucleotides MPMX19_04834 and MPMX19_04835 are separated by 15 nucleotides MPMX19_04835 and MPMX19_04836 are separated by 22 nucleotides
MPMX19_04833: MPMX19_04833 - Cysteine desulfurase, at 240,658 to 241,920
_04833
MPMX19_04834: MPMX19_04834 - Zinc-dependent sulfurtransferase SufU, at 241,917 to 242,384
_04834
MPMX19_04835: MPMX19_04835 - hypothetical protein, at 242,400 to 242,861
_04835
MPMX19_04836: MPMX19_04836 - Iron-binding protein IscA, at 242,884 to 243,228
_04836
Position (kb) 241
242
243 Strain fitness (log2 ratio) -1
0
1 at 242.547 kb on + strand, within MPMX19_04835 at 242.547 kb on + strand, within MPMX19_04835 at 242.601 kb on + strand, within MPMX19_04835 at 242.646 kb on + strand, within MPMX19_04835 at 242.646 kb on + strand, within MPMX19_04835 at 242.653 kb on + strand, within MPMX19_04835 at 242.687 kb on + strand, within MPMX19_04835 at 242.687 kb on + strand, within MPMX19_04835 at 242.852 kb on + strand at 242.869 kb on + strand at 242.869 kb on + strand at 242.869 kb on + strand at 242.869 kb on + strand at 242.869 kb on + strand at 243.237 kb on - strand at 243.332 kb on + strand at 243.333 kb on - strand at 243.333 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 242,547 + MPMX19_04835 0.32 +0.2 242,547 + MPMX19_04835 0.32 +1.0 242,601 + MPMX19_04835 0.44 -0.1 242,646 + MPMX19_04835 0.53 +0.5 242,646 + MPMX19_04835 0.53 +1.1 242,653 + MPMX19_04835 0.55 -0.6 242,687 + MPMX19_04835 0.62 -0.8 242,687 + MPMX19_04835 0.62 +0.2 242,852 + +0.2 242,869 + +0.3 242,869 + +0.2 242,869 + -0.8 242,869 + -0.0 242,869 + -0.6 243,237 - +0.5 243,332 + +0.3 243,333 - -0.5 243,333 - +1.1
Or see this region's nucleotide sequence