Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04821 and MPMX19_04822 are separated by 287 nucleotides MPMX19_04822 and MPMX19_04823 are separated by 12 nucleotides MPMX19_04823 and MPMX19_04824 are separated by 40 nucleotides
MPMX19_04821: MPMX19_04821 - hypothetical protein, at 225,383 to 227,533
_04821
MPMX19_04822: MPMX19_04822 - Ornithine lipid N-methyltransferase, at 227,821 to 228,396
_04822
MPMX19_04823: MPMX19_04823 - hypothetical protein, at 228,409 to 229,731
_04823
MPMX19_04824: MPMX19_04824 - Malate synthase G, at 229,772 to 231,931
_04824
Position (kb) 228
229
230 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 227.445 kb on + strand at 227.445 kb on + strand at 227.446 kb on - strand at 227.446 kb on - strand at 227.446 kb on - strand at 227.527 kb on + strand at 227.527 kb on + strand at 227.528 kb on - strand at 227.528 kb on - strand at 227.528 kb on - strand at 227.528 kb on - strand at 227.551 kb on - strand at 227.551 kb on - strand at 227.551 kb on - strand at 227.760 kb on + strand at 227.760 kb on + strand at 227.760 kb on + strand at 227.761 kb on - strand at 227.764 kb on - strand at 227.774 kb on + strand at 227.888 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.272 kb on + strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.420 kb on + strand at 228.420 kb on + strand at 228.421 kb on - strand at 228.421 kb on - strand at 228.421 kb on - strand at 228.425 kb on + strand at 228.425 kb on + strand at 228.426 kb on - strand at 228.426 kb on - strand at 228.853 kb on + strand, within MPMX19_04823 at 228.853 kb on + strand, within MPMX19_04823 at 228.853 kb on + strand, within MPMX19_04823 at 228.853 kb on + strand, within MPMX19_04823 at 228.854 kb on - strand, within MPMX19_04823 at 228.854 kb on - strand, within MPMX19_04823 at 228.854 kb on - strand, within MPMX19_04823 at 229.027 kb on + strand, within MPMX19_04823 at 229.027 kb on + strand, within MPMX19_04823 at 229.027 kb on + strand, within MPMX19_04823 at 229.027 kb on + strand, within MPMX19_04823 at 229.027 kb on + strand, within MPMX19_04823 at 229.028 kb on - strand, within MPMX19_04823 at 229.028 kb on - strand, within MPMX19_04823 at 229.028 kb on - strand, within MPMX19_04823 at 229.036 kb on + strand, within MPMX19_04823 at 229.036 kb on + strand, within MPMX19_04823 at 229.036 kb on + strand, within MPMX19_04823 at 229.036 kb on + strand, within MPMX19_04823 at 229.037 kb on - strand, within MPMX19_04823 at 229.037 kb on - strand, within MPMX19_04823 at 229.037 kb on - strand, within MPMX19_04823 at 229.037 kb on - strand, within MPMX19_04823 at 229.037 kb on - strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.584 kb on + strand, within MPMX19_04823 at 229.585 kb on - strand, within MPMX19_04823 at 229.585 kb on - strand, within MPMX19_04823 at 229.657 kb on + strand at 229.658 kb on - strand at 229.663 kb on + strand at 229.663 kb on + strand at 229.664 kb on - strand at 229.664 kb on - strand at 229.664 kb on - strand at 229.664 kb on - strand at 229.664 kb on - strand at 229.681 kb on + strand at 229.681 kb on + strand at 229.681 kb on + strand at 229.681 kb on + strand at 229.681 kb on + strand at 229.681 kb on + strand at 229.681 kb on + strand at 229.682 kb on - strand at 229.682 kb on - strand at 229.682 kb on - strand at 229.682 kb on - strand at 229.682 kb on - strand at 229.729 kb on + strand at 229.729 kb on + strand at 229.730 kb on - strand at 229.730 kb on - strand at 229.825 kb on - strand at 229.914 kb on + strand at 229.914 kb on + strand at 229.914 kb on + strand at 229.914 kb on + strand at 229.914 kb on + strand at 229.915 kb on - strand at 229.915 kb on - strand at 229.915 kb on - strand at 229.915 kb on - strand at 229.915 kb on - strand at 230.127 kb on + strand, within MPMX19_04824 at 230.127 kb on + strand, within MPMX19_04824 at 230.127 kb on + strand, within MPMX19_04824 at 230.127 kb on + strand, within MPMX19_04824 at 230.128 kb on - strand, within MPMX19_04824 at 230.128 kb on - strand, within MPMX19_04824 at 230.128 kb on - strand, within MPMX19_04824 at 230.128 kb on - strand, within MPMX19_04824 at 230.286 kb on + strand, within MPMX19_04824 at 230.286 kb on + strand, within MPMX19_04824 at 230.286 kb on + strand, within MPMX19_04824 at 230.286 kb on + strand, within MPMX19_04824 at 230.287 kb on - strand, within MPMX19_04824 at 230.287 kb on - strand, within MPMX19_04824 at 230.287 kb on - strand, within MPMX19_04824 at 230.475 kb on + strand, within MPMX19_04824 at 230.475 kb on + strand, within MPMX19_04824 at 230.475 kb on + strand, within MPMX19_04824 at 230.476 kb on - strand, within MPMX19_04824 at 230.476 kb on - strand, within MPMX19_04824
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 227,445 + -0.7 227,445 + -1.4 227,446 - +0.9 227,446 - +0.1 227,446 - -0.2 227,527 + -0.6 227,527 + -0.8 227,528 - -0.5 227,528 - -0.3 227,528 - -0.9 227,528 - -0.0 227,551 - +1.5 227,551 - +1.5 227,551 - -1.2 227,760 + -2.3 227,760 + +0.2 227,760 + +0.8 227,761 - +1.1 227,764 - -0.9 227,774 + -0.3 227,888 + MPMX19_04822 0.12 +2.1 228,271 + MPMX19_04822 0.78 -0.0 228,271 + MPMX19_04822 0.78 +1.0 228,271 + MPMX19_04822 0.78 +1.1 228,271 + MPMX19_04822 0.78 -0.5 228,271 + MPMX19_04822 0.78 +0.5 228,271 + MPMX19_04822 0.78 +1.5 228,271 + MPMX19_04822 0.78 +0.2 228,272 + MPMX19_04822 0.78 +0.5 228,272 - MPMX19_04822 0.78 +0.5 228,272 - MPMX19_04822 0.78 +0.5 228,272 - MPMX19_04822 0.78 -0.8 228,272 - MPMX19_04822 0.78 -0.7 228,272 - MPMX19_04822 0.78 -2.2 228,272 - MPMX19_04822 0.78 +0.5 228,272 - MPMX19_04822 0.78 +1.5 228,272 - MPMX19_04822 0.78 -0.6 228,272 - MPMX19_04822 0.78 -2.6 228,272 - MPMX19_04822 0.78 -1.3 228,272 - MPMX19_04822 0.78 -1.0 228,420 + -0.5 228,420 + -0.8 228,421 - -0.8 228,421 - -0.9 228,421 - -0.0 228,425 + -0.7 228,425 + +0.5 228,426 - +1.0 228,426 - +1.0 228,853 + MPMX19_04823 0.34 +1.5 228,853 + MPMX19_04823 0.34 -1.8 228,853 + MPMX19_04823 0.34 -2.2 228,853 + MPMX19_04823 0.34 -0.3 228,854 - MPMX19_04823 0.34 -0.8 228,854 - MPMX19_04823 0.34 +1.5 228,854 - MPMX19_04823 0.34 +0.8 229,027 + MPMX19_04823 0.47 -1.3 229,027 + MPMX19_04823 0.47 -0.5 229,027 + MPMX19_04823 0.47 -1.6 229,027 + MPMX19_04823 0.47 +0.5 229,027 + MPMX19_04823 0.47 +1.5 229,028 - MPMX19_04823 0.47 -0.3 229,028 - MPMX19_04823 0.47 -0.8 229,028 - MPMX19_04823 0.47 -0.0 229,036 + MPMX19_04823 0.47 -0.5 229,036 + MPMX19_04823 0.47 -0.9 229,036 + MPMX19_04823 0.47 -1.0 229,036 + MPMX19_04823 0.47 -2.2 229,037 - MPMX19_04823 0.47 -0.3 229,037 - MPMX19_04823 0.47 -2.0 229,037 - MPMX19_04823 0.47 -0.5 229,037 - MPMX19_04823 0.47 -0.6 229,037 - MPMX19_04823 0.47 -1.5 229,507 + MPMX19_04823 0.83 -1.6 229,507 + MPMX19_04823 0.83 -1.5 229,507 + MPMX19_04823 0.83 -0.5 229,507 + MPMX19_04823 0.83 -0.8 229,507 + MPMX19_04823 0.83 -2.8 229,507 + MPMX19_04823 0.83 -0.0 229,507 + MPMX19_04823 0.83 +0.5 229,507 + MPMX19_04823 0.83 -0.8 229,507 + MPMX19_04823 0.83 -0.5 229,507 + MPMX19_04823 0.83 -1.0 229,507 + MPMX19_04823 0.83 -2.5 229,507 + MPMX19_04823 0.83 -2.1 229,507 + MPMX19_04823 0.83 -0.8 229,507 + MPMX19_04823 0.83 -1.3 229,507 + MPMX19_04823 0.83 -1.3 229,507 + MPMX19_04823 0.83 +1.5 229,507 + MPMX19_04823 0.83 -1.0 229,507 + MPMX19_04823 0.83 -0.8 229,508 - MPMX19_04823 0.83 -1.0 229,508 - MPMX19_04823 0.83 -0.7 229,508 - MPMX19_04823 0.83 -0.8 229,508 - MPMX19_04823 0.83 -1.8 229,508 - MPMX19_04823 0.83 -1.5 229,508 - MPMX19_04823 0.83 -0.8 229,508 - MPMX19_04823 0.83 -1.0 229,508 - MPMX19_04823 0.83 -0.4 229,508 - MPMX19_04823 0.83 -1.6 229,508 - MPMX19_04823 0.83 -1.8 229,508 - MPMX19_04823 0.83 -1.9 229,508 - MPMX19_04823 0.83 -0.3 229,508 - MPMX19_04823 0.83 -0.9 229,508 - MPMX19_04823 0.83 -1.8 229,508 - MPMX19_04823 0.83 -0.5 229,582 + MPMX19_04823 0.89 -1.2 229,582 + MPMX19_04823 0.89 -0.8 229,582 + MPMX19_04823 0.89 +0.2 229,582 + MPMX19_04823 0.89 -1.8 229,582 + MPMX19_04823 0.89 -2.5 229,582 + MPMX19_04823 0.89 +0.0 229,582 + MPMX19_04823 0.89 -1.9 229,582 + MPMX19_04823 0.89 -0.0 229,582 + MPMX19_04823 0.89 +0.5 229,582 + MPMX19_04823 0.89 -0.8 229,582 + MPMX19_04823 0.89 +2.4 229,582 + MPMX19_04823 0.89 -1.3 229,583 - MPMX19_04823 0.89 +0.5 229,583 - MPMX19_04823 0.89 +0.5 229,583 - MPMX19_04823 0.89 -1.6 229,583 - MPMX19_04823 0.89 -1.0 229,583 - MPMX19_04823 0.89 -1.2 229,583 - MPMX19_04823 0.89 +0.2 229,583 - MPMX19_04823 0.89 -0.0 229,583 - MPMX19_04823 0.89 -1.6 229,583 - MPMX19_04823 0.89 -0.6 229,583 - MPMX19_04823 0.89 -2.5 229,583 - MPMX19_04823 0.89 +0.2 229,583 - MPMX19_04823 0.89 -1.0 229,583 - MPMX19_04823 0.89 -0.0 229,583 - MPMX19_04823 0.89 -1.0 229,583 - MPMX19_04823 0.89 -0.5 229,583 - MPMX19_04823 0.89 -2.3 229,584 + MPMX19_04823 0.89 -1.0 229,585 - MPMX19_04823 0.89 -0.7 229,585 - MPMX19_04823 0.89 +0.8 229,657 + -2.0 229,658 - -2.4 229,663 + -0.5 229,663 + -1.5 229,664 - +1.1 229,664 - -0.8 229,664 - -1.0 229,664 - -0.8 229,664 - -1.0 229,681 + -1.8 229,681 + -0.9 229,681 + -0.4 229,681 + -0.9 229,681 + -0.8 229,681 + -1.0 229,681 + -1.0 229,682 - -1.3 229,682 - -0.3 229,682 - -1.5 229,682 - -0.3 229,682 - -1.5 229,729 + -0.3 229,729 + +0.5 229,730 - -0.8 229,730 - -2.4 229,825 - -0.0 229,914 + -2.0 229,914 + -1.6 229,914 + +1.1 229,914 + -0.5 229,914 + +0.4 229,915 - -1.0 229,915 - -1.4 229,915 - +1.0 229,915 - -0.5 229,915 - -0.0 230,127 + MPMX19_04824 0.16 +0.5 230,127 + MPMX19_04824 0.16 -1.4 230,127 + MPMX19_04824 0.16 -0.8 230,127 + MPMX19_04824 0.16 -0.6 230,128 - MPMX19_04824 0.16 -0.5 230,128 - MPMX19_04824 0.16 -1.6 230,128 - MPMX19_04824 0.16 -0.4 230,128 - MPMX19_04824 0.16 -0.8 230,286 + MPMX19_04824 0.24 -0.9 230,286 + MPMX19_04824 0.24 -1.3 230,286 + MPMX19_04824 0.24 +1.0 230,286 + MPMX19_04824 0.24 -0.8 230,287 - MPMX19_04824 0.24 +0.3 230,287 - MPMX19_04824 0.24 +0.7 230,287 - MPMX19_04824 0.24 -1.3 230,475 + MPMX19_04824 0.33 +0.5 230,475 + MPMX19_04824 0.33 -0.0 230,475 + MPMX19_04824 0.33 -0.3 230,476 - MPMX19_04824 0.33 -1.6 230,476 - MPMX19_04824 0.33 -1.6
Or see this region's nucleotide sequence