Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04749 and MPMX19_04750 overlap by 4 nucleotides MPMX19_04750 and MPMX19_04751 overlap by 4 nucleotides MPMX19_04751 and MPMX19_04752 are separated by 152 nucleotides
MPMX19_04749: MPMX19_04749 - hypothetical protein, at 140,060 to 141,484
_04749
MPMX19_04750: MPMX19_04750 - hypothetical protein, at 141,481 to 142,116
_04750
MPMX19_04751: MPMX19_04751 - hypothetical protein, at 142,113 to 142,814
_04751
MPMX19_04752: MPMX19_04752 - putative transporter YycB, at 142,967 to 144,235
_04752
Position (kb) 142
143 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 141.203 kb on + strand, within MPMX19_04749 at 141.203 kb on + strand, within MPMX19_04749 at 141.203 kb on + strand, within MPMX19_04749 at 141.204 kb on - strand, within MPMX19_04749 at 141.204 kb on - strand, within MPMX19_04749 at 141.204 kb on - strand, within MPMX19_04749 at 141.204 kb on - strand, within MPMX19_04749 at 141.204 kb on - strand, within MPMX19_04749 at 141.204 kb on - strand, within MPMX19_04749 at 141.204 kb on - strand, within MPMX19_04749 at 141.239 kb on + strand, within MPMX19_04749 at 141.239 kb on + strand, within MPMX19_04749 at 141.239 kb on + strand, within MPMX19_04749 at 141.239 kb on + strand, within MPMX19_04749 at 141.240 kb on - strand, within MPMX19_04749 at 141.248 kb on + strand, within MPMX19_04749 at 141.248 kb on + strand, within MPMX19_04749 at 141.249 kb on - strand, within MPMX19_04749 at 141.249 kb on - strand, within MPMX19_04749 at 141.290 kb on + strand, within MPMX19_04749 at 141.290 kb on + strand, within MPMX19_04749 at 141.290 kb on + strand, within MPMX19_04749 at 141.290 kb on + strand, within MPMX19_04749 at 141.290 kb on + strand, within MPMX19_04749 at 141.290 kb on + strand, within MPMX19_04749 at 141.290 kb on + strand, within MPMX19_04749 at 141.290 kb on + strand, within MPMX19_04749 at 141.290 kb on + strand, within MPMX19_04749 at 141.290 kb on + strand, within MPMX19_04749 at 141.290 kb on + strand, within MPMX19_04749 at 141.290 kb on + strand, within MPMX19_04749 at 141.290 kb on + strand, within MPMX19_04749 at 141.290 kb on + strand, within MPMX19_04749 at 141.290 kb on + strand, within MPMX19_04749 at 141.291 kb on - strand, within MPMX19_04749 at 141.291 kb on - strand, within MPMX19_04749 at 141.291 kb on - strand, within MPMX19_04749 at 141.291 kb on - strand, within MPMX19_04749 at 141.291 kb on - strand, within MPMX19_04749 at 141.291 kb on - strand, within MPMX19_04749 at 141.291 kb on - strand, within MPMX19_04749 at 141.291 kb on - strand, within MPMX19_04749 at 141.291 kb on - strand, within MPMX19_04749 at 141.291 kb on - strand, within MPMX19_04749 at 141.291 kb on - strand, within MPMX19_04749 at 141.291 kb on - strand, within MPMX19_04749 at 141.291 kb on - strand, within MPMX19_04749 at 141.291 kb on - strand, within MPMX19_04749 at 141.291 kb on - strand, within MPMX19_04749 at 141.344 kb on + strand at 141.345 kb on - strand at 141.819 kb on + strand, within MPMX19_04750 at 141.819 kb on + strand, within MPMX19_04750 at 141.940 kb on + strand, within MPMX19_04750 at 141.940 kb on + strand, within MPMX19_04750 at 141.940 kb on + strand, within MPMX19_04750 at 141.940 kb on + strand, within MPMX19_04750 at 141.941 kb on - strand, within MPMX19_04750 at 141.941 kb on - strand, within MPMX19_04750 at 141.941 kb on - strand, within MPMX19_04750 at 141.941 kb on - strand, within MPMX19_04750 at 141.941 kb on - strand, within MPMX19_04750 at 141.941 kb on - strand, within MPMX19_04750 at 141.941 kb on - strand, within MPMX19_04750 at 141.941 kb on - strand, within MPMX19_04750 at 141.941 kb on - strand, within MPMX19_04750 at 141.941 kb on - strand, within MPMX19_04750 at 141.941 kb on - strand, within MPMX19_04750 at 141.941 kb on - strand, within MPMX19_04750 at 142.518 kb on - strand, within MPMX19_04751 at 143.474 kb on + strand, within MPMX19_04752 at 143.474 kb on + strand, within MPMX19_04752 at 143.474 kb on + strand, within MPMX19_04752 at 143.474 kb on + strand, within MPMX19_04752 at 143.474 kb on + strand, within MPMX19_04752 at 143.475 kb on - strand, within MPMX19_04752 at 143.475 kb on - strand, within MPMX19_04752 at 143.475 kb on - strand, within MPMX19_04752 at 143.475 kb on - strand, within MPMX19_04752 at 143.475 kb on - strand, within MPMX19_04752 at 143.729 kb on + strand, within MPMX19_04752 at 143.729 kb on + strand, within MPMX19_04752 at 143.729 kb on + strand, within MPMX19_04752 at 143.730 kb on - strand, within MPMX19_04752
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 141,203 + MPMX19_04749 0.80 -0.0 141,203 + MPMX19_04749 0.80 -1.3 141,203 + MPMX19_04749 0.80 -0.9 141,204 - MPMX19_04749 0.80 -1.7 141,204 - MPMX19_04749 0.80 -1.9 141,204 - MPMX19_04749 0.80 +0.5 141,204 - MPMX19_04749 0.80 +0.4 141,204 - MPMX19_04749 0.80 -1.2 141,204 - MPMX19_04749 0.80 -0.5 141,204 - MPMX19_04749 0.80 -0.5 141,239 + MPMX19_04749 0.83 +1.0 141,239 + MPMX19_04749 0.83 +0.8 141,239 + MPMX19_04749 0.83 -1.6 141,239 + MPMX19_04749 0.83 -0.6 141,240 - MPMX19_04749 0.83 -0.3 141,248 + MPMX19_04749 0.83 -0.3 141,248 + MPMX19_04749 0.83 -0.6 141,249 - MPMX19_04749 0.83 -1.8 141,249 - MPMX19_04749 0.83 +0.5 141,290 + MPMX19_04749 0.86 -0.9 141,290 + MPMX19_04749 0.86 -0.5 141,290 + MPMX19_04749 0.86 -2.1 141,290 + MPMX19_04749 0.86 -0.0 141,290 + MPMX19_04749 0.86 -1.5 141,290 + MPMX19_04749 0.86 -0.5 141,290 + MPMX19_04749 0.86 -1.0 141,290 + MPMX19_04749 0.86 +0.5 141,290 + MPMX19_04749 0.86 -1.6 141,290 + MPMX19_04749 0.86 +0.5 141,290 + MPMX19_04749 0.86 -1.6 141,290 + MPMX19_04749 0.86 -1.8 141,290 + MPMX19_04749 0.86 -0.3 141,290 + MPMX19_04749 0.86 +0.1 141,290 + MPMX19_04749 0.86 -0.8 141,291 - MPMX19_04749 0.86 +0.1 141,291 - MPMX19_04749 0.86 -0.8 141,291 - MPMX19_04749 0.86 -0.7 141,291 - MPMX19_04749 0.86 -1.9 141,291 - MPMX19_04749 0.86 -0.0 141,291 - MPMX19_04749 0.86 +0.2 141,291 - MPMX19_04749 0.86 +0.0 141,291 - MPMX19_04749 0.86 -0.0 141,291 - MPMX19_04749 0.86 -0.3 141,291 - MPMX19_04749 0.86 +0.2 141,291 - MPMX19_04749 0.86 -1.5 141,291 - MPMX19_04749 0.86 -0.8 141,291 - MPMX19_04749 0.86 -1.9 141,291 - MPMX19_04749 0.86 -0.5 141,291 - MPMX19_04749 0.86 +0.7 141,344 + -1.0 141,345 - -2.2 141,819 + MPMX19_04750 0.53 -0.6 141,819 + MPMX19_04750 0.53 -0.0 141,940 + MPMX19_04750 0.72 -0.8 141,940 + MPMX19_04750 0.72 -1.5 141,940 + MPMX19_04750 0.72 +0.5 141,940 + MPMX19_04750 0.72 -1.7 141,941 - MPMX19_04750 0.72 -0.5 141,941 - MPMX19_04750 0.72 -0.5 141,941 - MPMX19_04750 0.72 -0.8 141,941 - MPMX19_04750 0.72 -0.0 141,941 - MPMX19_04750 0.72 -0.5 141,941 - MPMX19_04750 0.72 +0.2 141,941 - MPMX19_04750 0.72 -0.5 141,941 - MPMX19_04750 0.72 -1.6 141,941 - MPMX19_04750 0.72 -0.0 141,941 - MPMX19_04750 0.72 -1.4 141,941 - MPMX19_04750 0.72 -2.4 141,941 - MPMX19_04750 0.72 -0.2 142,518 - MPMX19_04751 0.58 -0.0 143,474 + MPMX19_04752 0.40 +0.4 143,474 + MPMX19_04752 0.40 -0.8 143,474 + MPMX19_04752 0.40 -0.0 143,474 + MPMX19_04752 0.40 -1.3 143,474 + MPMX19_04752 0.40 +0.0 143,475 - MPMX19_04752 0.40 -1.7 143,475 - MPMX19_04752 0.40 -0.5 143,475 - MPMX19_04752 0.40 -1.2 143,475 - MPMX19_04752 0.40 -0.9 143,475 - MPMX19_04752 0.40 -0.8 143,729 + MPMX19_04752 0.60 +0.2 143,729 + MPMX19_04752 0.60 -1.9 143,729 + MPMX19_04752 0.60 +0.2 143,730 - MPMX19_04752 0.60 -3.0
Or see this region's nucleotide sequence