Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04660

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04658 and MPMX19_04659 are separated by 26 nucleotidesMPMX19_04659 and MPMX19_04660 overlap by 8 nucleotidesMPMX19_04660 and MPMX19_04661 overlap by 14 nucleotidesMPMX19_04661 and MPMX19_04662 overlap by 4 nucleotides MPMX19_04658: MPMX19_04658 - hypothetical protein, at 44,901 to 46,328 _04658 MPMX19_04659: MPMX19_04659 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 46,355 to 47,068 _04659 MPMX19_04660: MPMX19_04660 - Lipopolysaccharide export system ATP-binding protein LptB, at 47,061 to 47,807 _04660 MPMX19_04661: MPMX19_04661 - hypothetical protein, at 47,794 to 48,792 _04661 MPMX19_04662: MPMX19_04662 - High-affinity branched-chain amino acid transport system permease protein LivH, at 48,789 to 49,661 _04662 Position (kb) 47 48Strain fitness (log2 ratio) -2 -1 0 1at 46.368 kb on + strandat 46.368 kb on + strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 47.116 kb on + strandat 47.116 kb on + strandat 47.116 kb on + strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.503 kb on + strand, within MPMX19_04660at 47.503 kb on + strand, within MPMX19_04660at 47.503 kb on + strand, within MPMX19_04660at 47.504 kb on - strand, within MPMX19_04660at 47.567 kb on + strand, within MPMX19_04660at 47.567 kb on + strand, within MPMX19_04660at 47.858 kb on - strandat 48.080 kb on + strand, within MPMX19_04661at 48.080 kb on + strand, within MPMX19_04661at 48.081 kb on - strand, within MPMX19_04661at 48.101 kb on + strand, within MPMX19_04661at 48.101 kb on + strand, within MPMX19_04661at 48.101 kb on + strand, within MPMX19_04661at 48.101 kb on + strand, within MPMX19_04661at 48.101 kb on + strand, within MPMX19_04661at 48.110 kb on + strand, within MPMX19_04661at 48.110 kb on + strand, within MPMX19_04661at 48.110 kb on + strand, within MPMX19_04661at 48.110 kb on + strand, within MPMX19_04661at 48.110 kb on + strand, within MPMX19_04661at 48.110 kb on + strand, within MPMX19_04661at 48.110 kb on + strand, within MPMX19_04661at 48.110 kb on + strand, within MPMX19_04661at 48.111 kb on - strand, within MPMX19_04661at 48.111 kb on - strand, within MPMX19_04661at 48.111 kb on - strand, within MPMX19_04661at 48.111 kb on - strand, within MPMX19_04661at 48.111 kb on - strand, within MPMX19_04661at 48.111 kb on - strand, within MPMX19_04661at 48.119 kb on + strand, within MPMX19_04661at 48.119 kb on + strand, within MPMX19_04661at 48.119 kb on + strand, within MPMX19_04661at 48.119 kb on + strand, within MPMX19_04661at 48.119 kb on + strand, within MPMX19_04661at 48.119 kb on + strand, within MPMX19_04661at 48.119 kb on + strand, within MPMX19_04661at 48.120 kb on - strand, within MPMX19_04661at 48.120 kb on - strand, within MPMX19_04661at 48.120 kb on - strand, within MPMX19_04661at 48.120 kb on - strand, within MPMX19_04661at 48.314 kb on + strand, within MPMX19_04661at 48.314 kb on + strand, within MPMX19_04661at 48.314 kb on + strand, within MPMX19_04661at 48.315 kb on - strand, within MPMX19_04661at 48.315 kb on - strand, within MPMX19_04661at 48.315 kb on - strand, within MPMX19_04661at 48.458 kb on + strand, within MPMX19_04661at 48.459 kb on - strand, within MPMX19_04661at 48.459 kb on - strand, within MPMX19_04661at 48.459 kb on - strand, within MPMX19_04661at 48.564 kb on - strand, within MPMX19_04661at 48.590 kb on + strand, within MPMX19_04661at 48.590 kb on + strand, within MPMX19_04661at 48.590 kb on + strand, within MPMX19_04661at 48.590 kb on + strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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46,368 + -0.3
46,368 + -2.4
46,369 - -1.0
46,369 - +0.8
46,369 - -0.9
46,369 - -0.8
46,369 - +0.3
46,369 - +1.0
46,369 - +1.1
46,369 - -0.3
46,446 + MPMX19_04659 0.13 -0.3
46,446 + MPMX19_04659 0.13 -0.0
46,446 + MPMX19_04659 0.13 -0.6
46,446 + MPMX19_04659 0.13 +1.2
46,446 + MPMX19_04659 0.13 +1.0
46,446 + MPMX19_04659 0.13 -1.9
46,446 + MPMX19_04659 0.13 -0.0
46,446 + MPMX19_04659 0.13 -1.9
46,446 + MPMX19_04659 0.13 -0.6
46,446 + MPMX19_04659 0.13 -1.2
46,446 + MPMX19_04659 0.13 +1.5
46,446 + MPMX19_04659 0.13 +0.5
46,446 + MPMX19_04659 0.13 +0.2
46,447 - MPMX19_04659 0.13 +1.2
46,447 - MPMX19_04659 0.13 -1.8
46,447 - MPMX19_04659 0.13 +0.3
46,447 - MPMX19_04659 0.13 +0.7
46,447 - MPMX19_04659 0.13 +1.1
46,447 - MPMX19_04659 0.13 -0.8
46,447 - MPMX19_04659 0.13 -0.9
46,447 - MPMX19_04659 0.13 +0.2
46,447 - MPMX19_04659 0.13 -2.3
46,447 - MPMX19_04659 0.13 +0.8
46,447 - MPMX19_04659 0.13 -1.3
46,447 - MPMX19_04659 0.13 -0.3
46,447 - MPMX19_04659 0.13 +0.7
46,447 - MPMX19_04659 0.13 -0.0
46,447 - MPMX19_04659 0.13 -0.0
47,116 + -0.5
47,116 + -1.8
47,116 + +0.5
47,117 - +1.5
47,117 - -1.8
47,194 + MPMX19_04660 0.18 +0.2
47,194 + MPMX19_04660 0.18 -1.1
47,194 + MPMX19_04660 0.18 -0.0
47,194 + MPMX19_04660 0.18 -0.8
47,194 + MPMX19_04660 0.18 -0.3
47,194 + MPMX19_04660 0.18 -0.5
47,194 + MPMX19_04660 0.18 -0.8
47,194 + MPMX19_04660 0.18 +1.0
47,194 + MPMX19_04660 0.18 -1.8
47,194 + MPMX19_04660 0.18 -0.5
47,194 + MPMX19_04660 0.18 +0.2
47,194 + MPMX19_04660 0.18 -1.8
47,194 + MPMX19_04660 0.18 -0.6
47,195 - MPMX19_04660 0.18 -0.8
47,195 - MPMX19_04660 0.18 -1.6
47,195 - MPMX19_04660 0.18 -0.5
47,195 - MPMX19_04660 0.18 -1.9
47,195 - MPMX19_04660 0.18 -2.3
47,195 - MPMX19_04660 0.18 -1.3
47,195 - MPMX19_04660 0.18 +0.5
47,195 - MPMX19_04660 0.18 -1.9
47,195 - MPMX19_04660 0.18 +1.0
47,503 + MPMX19_04660 0.59 -0.3
47,503 + MPMX19_04660 0.59 -0.8
47,503 + MPMX19_04660 0.59 -0.6
47,504 - MPMX19_04660 0.59 +0.5
47,567 + MPMX19_04660 0.68 -0.8
47,567 + MPMX19_04660 0.68 -1.0
47,858 - -0.0
48,080 + MPMX19_04661 0.29 -0.0
48,080 + MPMX19_04661 0.29 +0.1
48,081 - MPMX19_04661 0.29 -1.0
48,101 + MPMX19_04661 0.31 -0.4
48,101 + MPMX19_04661 0.31 -0.8
48,101 + MPMX19_04661 0.31 -0.3
48,101 + MPMX19_04661 0.31 +0.6
48,101 + MPMX19_04661 0.31 +0.3
48,110 + MPMX19_04661 0.32 -0.5
48,110 + MPMX19_04661 0.32 -0.8
48,110 + MPMX19_04661 0.32 -0.8
48,110 + MPMX19_04661 0.32 -0.5
48,110 + MPMX19_04661 0.32 -0.4
48,110 + MPMX19_04661 0.32 -1.9
48,110 + MPMX19_04661 0.32 -1.0
48,110 + MPMX19_04661 0.32 +1.3
48,111 - MPMX19_04661 0.32 +1.0
48,111 - MPMX19_04661 0.32 -1.3
48,111 - MPMX19_04661 0.32 -1.4
48,111 - MPMX19_04661 0.32 +0.5
48,111 - MPMX19_04661 0.32 +0.5
48,111 - MPMX19_04661 0.32 -2.0
48,119 + MPMX19_04661 0.33 -1.9
48,119 + MPMX19_04661 0.33 -1.8
48,119 + MPMX19_04661 0.33 -1.4
48,119 + MPMX19_04661 0.33 -1.5
48,119 + MPMX19_04661 0.33 +0.5
48,119 + MPMX19_04661 0.33 +0.6
48,119 + MPMX19_04661 0.33 -1.0
48,120 - MPMX19_04661 0.33 -1.3
48,120 - MPMX19_04661 0.33 +0.7
48,120 - MPMX19_04661 0.33 -0.5
48,120 - MPMX19_04661 0.33 +0.5
48,314 + MPMX19_04661 0.52 -0.5
48,314 + MPMX19_04661 0.52 -1.9
48,314 + MPMX19_04661 0.52 -0.0
48,315 - MPMX19_04661 0.52 -0.5
48,315 - MPMX19_04661 0.52 -0.9
48,315 - MPMX19_04661 0.52 -0.6
48,458 + MPMX19_04661 0.66 +0.5
48,459 - MPMX19_04661 0.67 -0.3
48,459 - MPMX19_04661 0.67 +0.5
48,459 - MPMX19_04661 0.67 -0.3
48,564 - MPMX19_04661 0.77 -1.0
48,590 + MPMX19_04661 0.80 -1.1
48,590 + MPMX19_04661 0.80 -0.0
48,590 + MPMX19_04661 0.80 +0.8
48,590 + MPMX19_04661 0.80 -0.3
48,591 - MPMX19_04661 0.80 +0.8
48,591 - MPMX19_04661 0.80 -0.0
48,591 - MPMX19_04661 0.80 -0.0
48,591 - MPMX19_04661 0.80 -2.0
48,591 - MPMX19_04661 0.80 +1.0
48,591 - MPMX19_04661 0.80 -1.6
48,591 - MPMX19_04661 0.80 -0.0
48,591 - MPMX19_04661 0.80 -0.0
48,591 - MPMX19_04661 0.80 -0.0
48,591 - MPMX19_04661 0.80 -2.5
48,591 - MPMX19_04661 0.80 -1.0
48,591 - MPMX19_04661 0.80 +0.5

Or see this region's nucleotide sequence