Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04544 and MPMX19_04545 are separated by 44 nucleotides MPMX19_04545 and MPMX19_04546 are separated by 119 nucleotides MPMX19_04546 and MPMX19_04547 are separated by 63 nucleotides
MPMX19_04544: MPMX19_04544 - hypothetical protein, at 916,951 to 920,484
_04544
MPMX19_04545: MPMX19_04545 - hypothetical protein, at 920,529 to 921,206
_04545
MPMX19_04546: MPMX19_04546 - Glutamine transport ATP-binding protein GlnQ, at 921,326 to 922,054
_04546
MPMX19_04547: MPMX19_04547 - D-amino acid dehydrogenase, at 922,118 to 925,087
_04547
Position (kb) 920
921
922 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 919.636 kb on + strand, within MPMX19_04544 at 919.870 kb on + strand, within MPMX19_04544 at 919.885 kb on + strand, within MPMX19_04544 at 919.885 kb on + strand, within MPMX19_04544 at 919.885 kb on + strand, within MPMX19_04544 at 919.886 kb on - strand, within MPMX19_04544 at 919.886 kb on - strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.988 kb on - strand, within MPMX19_04544 at 919.988 kb on - strand, within MPMX19_04544 at 920.002 kb on + strand, within MPMX19_04544 at 920.002 kb on + strand, within MPMX19_04544 at 920.002 kb on + strand, within MPMX19_04544 at 920.002 kb on + strand, within MPMX19_04544 at 920.002 kb on + strand, within MPMX19_04544 at 920.003 kb on - strand, within MPMX19_04544 at 920.014 kb on + strand, within MPMX19_04544 at 920.014 kb on + strand, within MPMX19_04544 at 920.014 kb on + strand, within MPMX19_04544 at 920.015 kb on - strand, within MPMX19_04544 at 920.015 kb on - strand, within MPMX19_04544 at 920.033 kb on - strand, within MPMX19_04544 at 920.033 kb on - strand, within MPMX19_04544 at 920.033 kb on - strand, within MPMX19_04544 at 920.161 kb on + strand at 920.161 kb on + strand at 920.161 kb on + strand at 920.161 kb on + strand at 920.162 kb on - strand at 920.162 kb on - strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.285 kb on - strand at 920.285 kb on - strand at 920.285 kb on - strand at 920.576 kb on + strand at 920.576 kb on + strand at 920.577 kb on - strand at 920.938 kb on + strand, within MPMX19_04545 at 920.938 kb on + strand, within MPMX19_04545 at 921.134 kb on - strand, within MPMX19_04545 at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.297 kb on + strand at 921.864 kb on + strand, within MPMX19_04546 at 922.023 kb on + strand at 922.023 kb on + strand at 922.023 kb on + strand at 922.023 kb on + strand at 922.023 kb on + strand at 922.024 kb on - strand at 922.024 kb on - strand at 922.024 kb on - strand at 922.024 kb on - strand at 922.024 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 919,636 + MPMX19_04544 0.76 +0.3 919,870 + MPMX19_04544 0.83 +1.3 919,885 + MPMX19_04544 0.83 -0.5 919,885 + MPMX19_04544 0.83 -0.5 919,885 + MPMX19_04544 0.83 -0.6 919,886 - MPMX19_04544 0.83 +0.3 919,886 - MPMX19_04544 0.83 -0.3 919,987 + MPMX19_04544 0.86 -1.5 919,987 + MPMX19_04544 0.86 +0.1 919,987 + MPMX19_04544 0.86 -0.6 919,987 + MPMX19_04544 0.86 -0.0 919,987 + MPMX19_04544 0.86 -1.0 919,987 + MPMX19_04544 0.86 +0.3 919,987 + MPMX19_04544 0.86 -1.0 919,988 - MPMX19_04544 0.86 -0.4 919,988 - MPMX19_04544 0.86 +1.1 920,002 + MPMX19_04544 0.86 -0.3 920,002 + MPMX19_04544 0.86 -0.3 920,002 + MPMX19_04544 0.86 -0.6 920,002 + MPMX19_04544 0.86 -0.0 920,002 + MPMX19_04544 0.86 -1.0 920,003 - MPMX19_04544 0.86 -0.0 920,014 + MPMX19_04544 0.87 -0.7 920,014 + MPMX19_04544 0.87 -2.7 920,014 + MPMX19_04544 0.87 +0.3 920,015 - MPMX19_04544 0.87 -0.7 920,015 - MPMX19_04544 0.87 -0.9 920,033 - MPMX19_04544 0.87 -1.0 920,033 - MPMX19_04544 0.87 -1.1 920,033 - MPMX19_04544 0.87 +0.3 920,161 + -0.3 920,161 + -0.1 920,161 + -1.9 920,161 + -1.7 920,162 - +0.3 920,162 - +1.3 920,284 + -1.0 920,284 + -1.0 920,284 + -0.9 920,284 + -0.5 920,284 + +0.2 920,284 + -0.7 920,284 + -0.9 920,285 - -1.0 920,285 - -0.3 920,285 - -0.3 920,576 + +1.3 920,576 + -0.7 920,577 - -0.7 920,938 + MPMX19_04545 0.60 +0.3 920,938 + MPMX19_04545 0.60 -1.1 921,134 - MPMX19_04545 0.89 +0.7 921,206 + -1.4 921,206 + -0.0 921,206 + -1.0 921,206 + +1.3 921,206 + -0.7 921,206 + -0.7 921,206 + -0.4 921,206 + -0.3 921,207 - -0.5 921,207 - -0.7 921,207 - -0.3 921,207 - -0.7 921,207 - +0.3 921,207 - +0.6 921,297 + -2.0 921,864 + MPMX19_04546 0.74 +0.3 922,023 + -1.0 922,023 + +0.5 922,023 + -2.8 922,023 + -1.5 922,023 + +2.1 922,024 - -0.5 922,024 - -0.9 922,024 - -1.4 922,024 - -0.1 922,024 - -0.9
Or see this region's nucleotide sequence