Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04364

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04362 and MPMX19_04363 are separated by 15 nucleotidesMPMX19_04363 and MPMX19_04364 overlap by 4 nucleotidesMPMX19_04364 and MPMX19_04365 are separated by 3 nucleotides MPMX19_04362: MPMX19_04362 - Cytidine deaminase, at 727,620 to 728,039 _04362 MPMX19_04363: MPMX19_04363 - Purine nucleoside phosphorylase 2, at 728,055 to 728,888 _04363 MPMX19_04364: MPMX19_04364 - Deoxyribose-phosphate aldolase, at 728,885 to 729,724 _04364 MPMX19_04365: MPMX19_04365 - Thymidine phosphorylase, at 729,728 to 731,047 _04365 Position (kb) 728 729 730Strain fitness (log2 ratio) -3 -2 -1 0 1at 728.029 kb on + strandat 728.029 kb on + strandat 728.029 kb on + strandat 728.029 kb on + strandat 728.030 kb on - strandat 728.184 kb on + strand, within MPMX19_04363at 728.184 kb on + strand, within MPMX19_04363at 728.184 kb on + strand, within MPMX19_04363at 728.184 kb on + strand, within MPMX19_04363at 728.185 kb on - strand, within MPMX19_04363at 728.185 kb on - strand, within MPMX19_04363at 728.185 kb on - strand, within MPMX19_04363at 728.185 kb on - strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.298 kb on + strand, within MPMX19_04363at 728.299 kb on - strand, within MPMX19_04363at 728.299 kb on - strand, within MPMX19_04363at 728.299 kb on - strand, within MPMX19_04363at 728.299 kb on - strand, within MPMX19_04363at 728.299 kb on - strand, within MPMX19_04363at 728.299 kb on - strand, within MPMX19_04363at 728.299 kb on - strand, within MPMX19_04363at 728.299 kb on - strand, within MPMX19_04363at 728.299 kb on - strand, within MPMX19_04363at 728.299 kb on - strand, within MPMX19_04363at 728.299 kb on - strand, within MPMX19_04363at 728.299 kb on - strand, within MPMX19_04363at 728.299 kb on - strand, within MPMX19_04363at 728.299 kb on - strand, within MPMX19_04363at 728.299 kb on - strand, within MPMX19_04363at 728.299 kb on - strand, within MPMX19_04363at 728.299 kb on - strand, within MPMX19_04363at 728.595 kb on + strand, within MPMX19_04363at 728.595 kb on + strand, within MPMX19_04363at 728.595 kb on + strand, within MPMX19_04363at 728.595 kb on + strand, within MPMX19_04363at 728.595 kb on + strand, within MPMX19_04363at 728.596 kb on - strand, within MPMX19_04363at 728.596 kb on - strand, within MPMX19_04363at 728.596 kb on - strand, within MPMX19_04363at 728.596 kb on - strand, within MPMX19_04363at 728.596 kb on - strand, within MPMX19_04363at 728.596 kb on - strand, within MPMX19_04363at 728.596 kb on - strand, within MPMX19_04363at 728.596 kb on - strand, within MPMX19_04363at 729.242 kb on + strand, within MPMX19_04364at 729.242 kb on + strand, within MPMX19_04364at 729.242 kb on + strand, within MPMX19_04364at 729.242 kb on + strand, within MPMX19_04364at 729.242 kb on + strand, within MPMX19_04364at 729.242 kb on + strand, within MPMX19_04364at 729.242 kb on + strand, within MPMX19_04364at 729.242 kb on + strand, within MPMX19_04364at 729.242 kb on + strand, within MPMX19_04364at 729.242 kb on + strand, within MPMX19_04364at 729.242 kb on + strand, within MPMX19_04364at 729.242 kb on + strand, within MPMX19_04364at 729.242 kb on + strand, within MPMX19_04364at 729.242 kb on + strand, within MPMX19_04364at 729.243 kb on - strand, within MPMX19_04364at 729.243 kb on - strand, within MPMX19_04364at 729.243 kb on - strand, within MPMX19_04364at 729.243 kb on - strand, within MPMX19_04364at 729.243 kb on - strand, within MPMX19_04364at 729.243 kb on - strand, within MPMX19_04364at 729.243 kb on - strand, within MPMX19_04364at 729.243 kb on - strand, within MPMX19_04364at 729.243 kb on - strand, within MPMX19_04364at 729.488 kb on + strand, within MPMX19_04364at 729.488 kb on + strand, within MPMX19_04364at 729.488 kb on + strand, within MPMX19_04364at 729.488 kb on + strand, within MPMX19_04364at 729.488 kb on + strand, within MPMX19_04364at 729.488 kb on + strand, within MPMX19_04364at 729.488 kb on + strand, within MPMX19_04364at 729.488 kb on + strand, within MPMX19_04364at 729.488 kb on + strand, within MPMX19_04364at 729.488 kb on + strand, within MPMX19_04364at 729.488 kb on + strand, within MPMX19_04364at 729.488 kb on + strand, within MPMX19_04364at 729.488 kb on + strand, within MPMX19_04364at 729.488 kb on + strand, within MPMX19_04364at 729.488 kb on + strand, within MPMX19_04364at 729.488 kb on + strand, within MPMX19_04364at 729.488 kb on + strand, within MPMX19_04364at 729.488 kb on + strand, within MPMX19_04364at 729.489 kb on - strand, within MPMX19_04364at 729.489 kb on - strand, within MPMX19_04364at 729.489 kb on - strand, within MPMX19_04364at 729.489 kb on - strand, within MPMX19_04364at 729.489 kb on - strand, within MPMX19_04364at 729.489 kb on - strand, within MPMX19_04364at 729.489 kb on - strand, within MPMX19_04364at 729.489 kb on - strand, within MPMX19_04364at 729.489 kb on - strand, within MPMX19_04364at 729.489 kb on - strand, within MPMX19_04364at 729.489 kb on - strand, within MPMX19_04364at 729.489 kb on - strand, within MPMX19_04364at 729.557 kb on + strand, within MPMX19_04364at 729.557 kb on + strand, within MPMX19_04364at 729.558 kb on - strand, within MPMX19_04364at 729.558 kb on - strand, within MPMX19_04364at 729.558 kb on - strand, within MPMX19_04364at 729.558 kb on - strand, within MPMX19_04364at 729.719 kb on + strandat 729.719 kb on + strandat 730.226 kb on + strand, within MPMX19_04365at 730.226 kb on + strand, within MPMX19_04365at 730.226 kb on + strand, within MPMX19_04365at 730.226 kb on + strand, within MPMX19_04365at 730.226 kb on + strand, within MPMX19_04365at 730.226 kb on + strand, within MPMX19_04365at 730.226 kb on + strand, within MPMX19_04365at 730.226 kb on + strand, within MPMX19_04365at 730.226 kb on + strand, within MPMX19_04365at 730.227 kb on - strand, within MPMX19_04365at 730.227 kb on - strand, within MPMX19_04365at 730.227 kb on - strand, within MPMX19_04365at 730.227 kb on - strand, within MPMX19_04365at 730.227 kb on - strand, within MPMX19_04365at 730.227 kb on - strand, within MPMX19_04365at 730.227 kb on - strand, within MPMX19_04365at 730.541 kb on + strand, within MPMX19_04365at 730.541 kb on + strand, within MPMX19_04365at 730.541 kb on + strand, within MPMX19_04365at 730.541 kb on + strand, within MPMX19_04365at 730.541 kb on + strand, within MPMX19_04365at 730.541 kb on + strand, within MPMX19_04365at 730.542 kb on - strand, within MPMX19_04365at 730.542 kb on - strand, within MPMX19_04365

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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728,029 + -1.4
728,029 + +1.4
728,029 + -0.9
728,029 + -1.6
728,030 - -0.0
728,184 + MPMX19_04363 0.15 -1.6
728,184 + MPMX19_04363 0.15 +0.4
728,184 + MPMX19_04363 0.15 +0.2
728,184 + MPMX19_04363 0.15 +0.9
728,185 - MPMX19_04363 0.16 -1.2
728,185 - MPMX19_04363 0.16 -1.5
728,185 - MPMX19_04363 0.16 -0.0
728,185 - MPMX19_04363 0.16 +1.4
728,298 + MPMX19_04363 0.29 -0.6
728,298 + MPMX19_04363 0.29 +0.4
728,298 + MPMX19_04363 0.29 -1.6
728,298 + MPMX19_04363 0.29 -1.0
728,298 + MPMX19_04363 0.29 +1.2
728,298 + MPMX19_04363 0.29 -1.6
728,298 + MPMX19_04363 0.29 -1.5
728,298 + MPMX19_04363 0.29 -1.0
728,298 + MPMX19_04363 0.29 -0.9
728,298 + MPMX19_04363 0.29 -0.9
728,298 + MPMX19_04363 0.29 +1.1
728,298 + MPMX19_04363 0.29 -2.2
728,298 + MPMX19_04363 0.29 -0.9
728,298 + MPMX19_04363 0.29 +0.1
728,298 + MPMX19_04363 0.29 +1.4
728,298 + MPMX19_04363 0.29 -1.8
728,298 + MPMX19_04363 0.29 +1.4
728,298 + MPMX19_04363 0.29 -0.2
728,298 + MPMX19_04363 0.29 +0.4
728,298 + MPMX19_04363 0.29 +0.8
728,298 + MPMX19_04363 0.29 -0.2
728,298 + MPMX19_04363 0.29 -0.9
728,298 + MPMX19_04363 0.29 -0.7
728,299 - MPMX19_04363 0.29 -2.0
728,299 - MPMX19_04363 0.29 +1.0
728,299 - MPMX19_04363 0.29 -0.1
728,299 - MPMX19_04363 0.29 +0.1
728,299 - MPMX19_04363 0.29 +0.4
728,299 - MPMX19_04363 0.29 -0.9
728,299 - MPMX19_04363 0.29 +0.6
728,299 - MPMX19_04363 0.29 -0.6
728,299 - MPMX19_04363 0.29 -0.6
728,299 - MPMX19_04363 0.29 +1.1
728,299 - MPMX19_04363 0.29 -0.6
728,299 - MPMX19_04363 0.29 -2.3
728,299 - MPMX19_04363 0.29 -1.3
728,299 - MPMX19_04363 0.29 +0.3
728,299 - MPMX19_04363 0.29 -0.9
728,299 - MPMX19_04363 0.29 +0.7
728,299 - MPMX19_04363 0.29 -0.5
728,595 + MPMX19_04363 0.65 +0.4
728,595 + MPMX19_04363 0.65 -0.4
728,595 + MPMX19_04363 0.65 -0.6
728,595 + MPMX19_04363 0.65 -0.9
728,595 + MPMX19_04363 0.65 -0.4
728,596 - MPMX19_04363 0.65 -0.9
728,596 - MPMX19_04363 0.65 +0.2
728,596 - MPMX19_04363 0.65 -0.6
728,596 - MPMX19_04363 0.65 +0.8
728,596 - MPMX19_04363 0.65 -0.2
728,596 - MPMX19_04363 0.65 -0.2
728,596 - MPMX19_04363 0.65 +0.2
728,596 - MPMX19_04363 0.65 -0.9
729,242 + MPMX19_04364 0.42 -1.6
729,242 + MPMX19_04364 0.42 +0.2
729,242 + MPMX19_04364 0.42 +1.0
729,242 + MPMX19_04364 0.42 -0.1
729,242 + MPMX19_04364 0.42 -1.4
729,242 + MPMX19_04364 0.42 -3.0
729,242 + MPMX19_04364 0.42 -1.0
729,242 + MPMX19_04364 0.42 -0.6
729,242 + MPMX19_04364 0.42 +1.4
729,242 + MPMX19_04364 0.42 +0.4
729,242 + MPMX19_04364 0.42 -0.2
729,242 + MPMX19_04364 0.42 -2.2
729,242 + MPMX19_04364 0.42 -0.2
729,242 + MPMX19_04364 0.42 -0.6
729,243 - MPMX19_04364 0.43 -0.6
729,243 - MPMX19_04364 0.43 -1.6
729,243 - MPMX19_04364 0.43 -1.3
729,243 - MPMX19_04364 0.43 +0.5
729,243 - MPMX19_04364 0.43 +0.2
729,243 - MPMX19_04364 0.43 -1.2
729,243 - MPMX19_04364 0.43 -1.6
729,243 - MPMX19_04364 0.43 +0.4
729,243 - MPMX19_04364 0.43 -0.5
729,488 + MPMX19_04364 0.72 +0.1
729,488 + MPMX19_04364 0.72 -1.2
729,488 + MPMX19_04364 0.72 +0.1
729,488 + MPMX19_04364 0.72 -0.2
729,488 + MPMX19_04364 0.72 -0.6
729,488 + MPMX19_04364 0.72 +0.7
729,488 + MPMX19_04364 0.72 -2.8
729,488 + MPMX19_04364 0.72 -0.6
729,488 + MPMX19_04364 0.72 +1.2
729,488 + MPMX19_04364 0.72 -2.5
729,488 + MPMX19_04364 0.72 -1.6
729,488 + MPMX19_04364 0.72 -0.5
729,488 + MPMX19_04364 0.72 -0.9
729,488 + MPMX19_04364 0.72 -1.4
729,488 + MPMX19_04364 0.72 -2.7
729,488 + MPMX19_04364 0.72 +0.4
729,488 + MPMX19_04364 0.72 -0.6
729,488 + MPMX19_04364 0.72 -1.8
729,489 - MPMX19_04364 0.72 -1.9
729,489 - MPMX19_04364 0.72 -0.3
729,489 - MPMX19_04364 0.72 +0.3
729,489 - MPMX19_04364 0.72 +0.1
729,489 - MPMX19_04364 0.72 -1.1
729,489 - MPMX19_04364 0.72 -1.1
729,489 - MPMX19_04364 0.72 -0.6
729,489 - MPMX19_04364 0.72 -1.9
729,489 - MPMX19_04364 0.72 -0.6
729,489 - MPMX19_04364 0.72 -1.7
729,489 - MPMX19_04364 0.72 -0.6
729,489 - MPMX19_04364 0.72 +0.8
729,557 + MPMX19_04364 0.80 -0.2
729,557 + MPMX19_04364 0.80 -0.8
729,558 - MPMX19_04364 0.80 -1.1
729,558 - MPMX19_04364 0.80 -1.2
729,558 - MPMX19_04364 0.80 -0.9
729,558 - MPMX19_04364 0.80 +1.4
729,719 + -0.2
729,719 + -0.4
730,226 + MPMX19_04365 0.38 +0.4
730,226 + MPMX19_04365 0.38 -2.1
730,226 + MPMX19_04365 0.38 -0.9
730,226 + MPMX19_04365 0.38 -0.2
730,226 + MPMX19_04365 0.38 +0.8
730,226 + MPMX19_04365 0.38 -1.2
730,226 + MPMX19_04365 0.38 -0.3
730,226 + MPMX19_04365 0.38 -0.8
730,226 + MPMX19_04365 0.38 -1.4
730,227 - MPMX19_04365 0.38 -1.8
730,227 - MPMX19_04365 0.38 -0.3
730,227 - MPMX19_04365 0.38 -0.2
730,227 - MPMX19_04365 0.38 +1.1
730,227 - MPMX19_04365 0.38 -0.5
730,227 - MPMX19_04365 0.38 -2.1
730,227 - MPMX19_04365 0.38 -0.2
730,541 + MPMX19_04365 0.62 +0.4
730,541 + MPMX19_04365 0.62 -1.1
730,541 + MPMX19_04365 0.62 +1.0
730,541 + MPMX19_04365 0.62 -0.2
730,541 + MPMX19_04365 0.62 -0.6
730,541 + MPMX19_04365 0.62 -0.2
730,542 - MPMX19_04365 0.62 +1.0
730,542 - MPMX19_04365 0.62 -1.2

Or see this region's nucleotide sequence