Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04253

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04252 and MPMX19_04253 are separated by 274 nucleotidesMPMX19_04253 and MPMX19_04254 are separated by 238 nucleotides MPMX19_04252: MPMX19_04252 - C4-dicarboxylate transport sensor protein DctB, at 605,112 to 606,962 _04252 MPMX19_04253: MPMX19_04253 - Aerobic C4-dicarboxylate transport protein, at 607,237 to 608,568 _04253 MPMX19_04254: MPMX19_04254 - NADP-dependent malic enzyme, at 608,807 to 611,119 _04254 Position (kb) 607 608 609Strain fitness (log2 ratio) -2 -1 0 1 2at 606.343 kb on + strand, within MPMX19_04252at 606.397 kb on + strand, within MPMX19_04252at 606.397 kb on + strand, within MPMX19_04252at 606.397 kb on + strand, within MPMX19_04252at 606.397 kb on + strand, within MPMX19_04252at 606.397 kb on + strand, within MPMX19_04252at 606.397 kb on + strand, within MPMX19_04252at 606.398 kb on - strand, within MPMX19_04252at 606.398 kb on - strand, within MPMX19_04252at 606.398 kb on - strand, within MPMX19_04252at 606.398 kb on - strand, within MPMX19_04252at 606.398 kb on - strand, within MPMX19_04252at 606.398 kb on - strand, within MPMX19_04252at 606.398 kb on - strand, within MPMX19_04252at 606.398 kb on - strand, within MPMX19_04252at 606.398 kb on - strand, within MPMX19_04252at 606.472 kb on + strand, within MPMX19_04252at 606.482 kb on - strand, within MPMX19_04252at 606.562 kb on + strand, within MPMX19_04252at 606.562 kb on + strand, within MPMX19_04252at 606.562 kb on + strand, within MPMX19_04252at 606.562 kb on + strand, within MPMX19_04252at 606.563 kb on - strand, within MPMX19_04252at 606.563 kb on - strand, within MPMX19_04252at 606.563 kb on - strand, within MPMX19_04252at 606.563 kb on - strand, within MPMX19_04252at 606.563 kb on - strand, within MPMX19_04252at 606.563 kb on - strand, within MPMX19_04252at 606.563 kb on - strand, within MPMX19_04252at 606.563 kb on - strand, within MPMX19_04252at 606.730 kb on + strand, within MPMX19_04252at 606.730 kb on + strand, within MPMX19_04252at 606.730 kb on + strand, within MPMX19_04252at 606.730 kb on + strand, within MPMX19_04252at 606.730 kb on + strand, within MPMX19_04252at 606.730 kb on + strand, within MPMX19_04252at 606.731 kb on - strand, within MPMX19_04252at 606.731 kb on - strand, within MPMX19_04252at 606.731 kb on - strand, within MPMX19_04252at 606.731 kb on - strand, within MPMX19_04252at 606.731 kb on - strand, within MPMX19_04252at 606.731 kb on - strand, within MPMX19_04252at 606.957 kb on - strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.304 kb on - strandat 607.304 kb on - strandat 607.304 kb on - strandat 607.304 kb on - strandat 607.304 kb on - strandat 607.304 kb on - strandat 607.304 kb on - strandat 607.304 kb on - strandat 607.304 kb on - strandat 607.304 kb on - strandat 607.304 kb on - strandat 607.366 kb on + strandat 607.366 kb on + strandat 607.366 kb on + strandat 607.366 kb on + strandat 607.366 kb on + strandat 607.366 kb on + strandat 607.366 kb on + strandat 607.367 kb on - strandat 607.367 kb on - strandat 607.367 kb on - strandat 607.367 kb on - strandat 607.367 kb on - strandat 607.367 kb on - strandat 607.367 kb on - strandat 607.525 kb on + strand, within MPMX19_04253at 607.525 kb on + strand, within MPMX19_04253at 607.525 kb on + strand, within MPMX19_04253at 607.525 kb on + strand, within MPMX19_04253at 607.525 kb on + strand, within MPMX19_04253at 607.526 kb on - strand, within MPMX19_04253at 607.526 kb on - strand, within MPMX19_04253at 607.526 kb on - strand, within MPMX19_04253at 607.526 kb on - strand, within MPMX19_04253at 607.526 kb on - strand, within MPMX19_04253at 607.645 kb on + strand, within MPMX19_04253at 607.645 kb on + strand, within MPMX19_04253at 607.645 kb on + strand, within MPMX19_04253at 607.645 kb on + strand, within MPMX19_04253at 607.645 kb on + strand, within MPMX19_04253at 607.646 kb on - strand, within MPMX19_04253at 607.646 kb on - strand, within MPMX19_04253at 607.646 kb on - strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.919 kb on - strand, within MPMX19_04253at 607.919 kb on - strand, within MPMX19_04253at 607.919 kb on - strand, within MPMX19_04253at 607.919 kb on - strand, within MPMX19_04253at 607.919 kb on - strand, within MPMX19_04253at 607.919 kb on - strand, within MPMX19_04253at 607.966 kb on + strand, within MPMX19_04253at 607.966 kb on + strand, within MPMX19_04253at 607.966 kb on + strand, within MPMX19_04253at 607.966 kb on + strand, within MPMX19_04253at 607.966 kb on + strand, within MPMX19_04253at 607.967 kb on - strand, within MPMX19_04253at 607.967 kb on - strand, within MPMX19_04253at 607.967 kb on - strand, within MPMX19_04253at 607.967 kb on - strand, within MPMX19_04253at 607.967 kb on - strand, within MPMX19_04253at 607.967 kb on - strand, within MPMX19_04253at 608.020 kb on + strand, within MPMX19_04253at 608.020 kb on + strand, within MPMX19_04253at 608.020 kb on + strand, within MPMX19_04253at 608.020 kb on + strand, within MPMX19_04253at 608.020 kb on + strand, within MPMX19_04253at 608.020 kb on + strand, within MPMX19_04253at 608.020 kb on + strand, within MPMX19_04253at 608.020 kb on + strand, within MPMX19_04253at 608.021 kb on - strand, within MPMX19_04253at 608.021 kb on - strand, within MPMX19_04253at 608.021 kb on - strand, within MPMX19_04253at 608.021 kb on - strand, within MPMX19_04253at 608.021 kb on - strand, within MPMX19_04253at 608.021 kb on - strand, within MPMX19_04253at 608.021 kb on - strand, within MPMX19_04253at 608.021 kb on - strand, within MPMX19_04253at 608.021 kb on - strand, within MPMX19_04253at 608.050 kb on + strand, within MPMX19_04253at 608.050 kb on + strand, within MPMX19_04253at 608.050 kb on + strand, within MPMX19_04253at 608.050 kb on + strand, within MPMX19_04253at 608.051 kb on - strand, within MPMX19_04253at 608.051 kb on - strand, within MPMX19_04253at 608.051 kb on - strand, within MPMX19_04253at 608.051 kb on - strand, within MPMX19_04253at 608.179 kb on + strand, within MPMX19_04253at 608.179 kb on + strand, within MPMX19_04253at 608.180 kb on - strand, within MPMX19_04253at 608.209 kb on + strand, within MPMX19_04253at 608.209 kb on + strand, within MPMX19_04253at 608.209 kb on + strand, within MPMX19_04253at 608.209 kb on + strand, within MPMX19_04253at 608.209 kb on + strand, within MPMX19_04253at 608.209 kb on + strand, within MPMX19_04253at 608.209 kb on + strand, within MPMX19_04253at 608.209 kb on + strand, within MPMX19_04253at 608.209 kb on + strand, within MPMX19_04253at 608.209 kb on + strand, within MPMX19_04253at 608.210 kb on - strand, within MPMX19_04253at 608.210 kb on - strand, within MPMX19_04253at 608.210 kb on - strand, within MPMX19_04253at 608.210 kb on - strand, within MPMX19_04253at 608.210 kb on - strand, within MPMX19_04253at 608.210 kb on - strand, within MPMX19_04253at 608.210 kb on - strand, within MPMX19_04253at 608.210 kb on - strand, within MPMX19_04253at 608.210 kb on - strand, within MPMX19_04253at 608.278 kb on + strand, within MPMX19_04253at 608.278 kb on + strand, within MPMX19_04253at 608.278 kb on + strand, within MPMX19_04253at 608.278 kb on + strand, within MPMX19_04253at 608.278 kb on + strand, within MPMX19_04253at 608.278 kb on + strand, within MPMX19_04253at 608.278 kb on + strand, within MPMX19_04253at 608.278 kb on + strand, within MPMX19_04253at 608.279 kb on - strand, within MPMX19_04253at 608.279 kb on - strand, within MPMX19_04253at 608.279 kb on - strand, within MPMX19_04253at 608.279 kb on - strand, within MPMX19_04253at 608.279 kb on - strand, within MPMX19_04253at 608.279 kb on - strand, within MPMX19_04253at 608.279 kb on - strand, within MPMX19_04253at 608.279 kb on - strand, within MPMX19_04253at 608.279 kb on - strand, within MPMX19_04253at 608.279 kb on - strand, within MPMX19_04253at 608.527 kb on + strandat 608.655 kb on + strandat 608.655 kb on + strandat 608.655 kb on + strandat 608.656 kb on - strandat 608.656 kb on - strandat 608.656 kb on - strandat 608.656 kb on - strandat 608.656 kb on - strandat 608.656 kb on - strandat 608.702 kb on - strandat 608.702 kb on - strandat 608.702 kb on - strandat 608.702 kb on - strandat 608.736 kb on + strandat 608.736 kb on + strandat 608.736 kb on + strandat 608.736 kb on + strandat 608.736 kb on + strandat 608.736 kb on + strandat 608.736 kb on + strandat 608.736 kb on + strandat 608.736 kb on + strandat 608.737 kb on - strandat 608.737 kb on - strandat 608.738 kb on + strandat 608.864 kb on - strandat 608.921 kb on + strandat 608.940 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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606,343 + MPMX19_04252 0.67 -0.7
606,397 + MPMX19_04252 0.69 +0.7
606,397 + MPMX19_04252 0.69 -0.6
606,397 + MPMX19_04252 0.69 -0.2
606,397 + MPMX19_04252 0.69 +1.2
606,397 + MPMX19_04252 0.69 +0.1
606,397 + MPMX19_04252 0.69 -0.3
606,398 - MPMX19_04252 0.69 -0.9
606,398 - MPMX19_04252 0.69 -0.9
606,398 - MPMX19_04252 0.69 +1.4
606,398 - MPMX19_04252 0.69 -1.6
606,398 - MPMX19_04252 0.69 -2.4
606,398 - MPMX19_04252 0.69 -1.2
606,398 - MPMX19_04252 0.69 -1.2
606,398 - MPMX19_04252 0.69 -0.9
606,398 - MPMX19_04252 0.69 +0.4
606,472 + MPMX19_04252 0.73 -0.6
606,482 - MPMX19_04252 0.74 -0.0
606,562 + MPMX19_04252 0.78 -1.6
606,562 + MPMX19_04252 0.78 -0.2
606,562 + MPMX19_04252 0.78 -1.0
606,562 + MPMX19_04252 0.78 -1.3
606,563 - MPMX19_04252 0.78 +0.4
606,563 - MPMX19_04252 0.78 -0.5
606,563 - MPMX19_04252 0.78 -1.4
606,563 - MPMX19_04252 0.78 -1.6
606,563 - MPMX19_04252 0.78 +0.0
606,563 - MPMX19_04252 0.78 +1.0
606,563 - MPMX19_04252 0.78 -0.3
606,563 - MPMX19_04252 0.78 +0.1
606,730 + MPMX19_04252 0.87 +0.6
606,730 + MPMX19_04252 0.87 +2.4
606,730 + MPMX19_04252 0.87 -1.1
606,730 + MPMX19_04252 0.87 -0.6
606,730 + MPMX19_04252 0.87 -1.1
606,730 + MPMX19_04252 0.87 -1.0
606,731 - MPMX19_04252 0.87 -1.6
606,731 - MPMX19_04252 0.87 -0.2
606,731 - MPMX19_04252 0.87 +0.7
606,731 - MPMX19_04252 0.87 +0.4
606,731 - MPMX19_04252 0.87 -1.9
606,731 - MPMX19_04252 0.87 +1.0
606,957 - -0.6
607,303 + +0.1
607,303 + -0.1
607,303 + +0.8
607,303 + -0.3
607,303 + -0.6
607,303 + -0.2
607,303 + -0.2
607,303 + -1.7
607,303 + +0.4
607,303 + -0.6
607,303 + +0.3
607,303 + +0.1
607,303 + -1.9
607,304 - -0.9
607,304 - -0.6
607,304 - -0.9
607,304 - +1.0
607,304 - -0.6
607,304 - +0.6
607,304 - +0.4
607,304 - -1.4
607,304 - -0.6
607,304 - -0.3
607,304 - -1.2
607,366 + -2.2
607,366 + +0.4
607,366 + -0.9
607,366 + +0.4
607,366 + -1.2
607,366 + -0.6
607,366 + -1.6
607,367 - -0.7
607,367 - +0.1
607,367 - -0.4
607,367 - +0.4
607,367 - +0.2
607,367 - -1.2
607,367 - +0.4
607,525 + MPMX19_04253 0.22 +0.1
607,525 + MPMX19_04253 0.22 -1.2
607,525 + MPMX19_04253 0.22 -0.6
607,525 + MPMX19_04253 0.22 +0.1
607,525 + MPMX19_04253 0.22 -0.3
607,526 - MPMX19_04253 0.22 -0.6
607,526 - MPMX19_04253 0.22 -0.4
607,526 - MPMX19_04253 0.22 -0.7
607,526 - MPMX19_04253 0.22 -2.0
607,526 - MPMX19_04253 0.22 -2.3
607,645 + MPMX19_04253 0.31 -0.2
607,645 + MPMX19_04253 0.31 +0.3
607,645 + MPMX19_04253 0.31 -2.5
607,645 + MPMX19_04253 0.31 -0.6
607,645 + MPMX19_04253 0.31 +1.4
607,646 - MPMX19_04253 0.31 -1.3
607,646 - MPMX19_04253 0.31 -0.6
607,646 - MPMX19_04253 0.31 +1.1
607,918 + MPMX19_04253 0.51 +1.4
607,918 + MPMX19_04253 0.51 -1.4
607,918 + MPMX19_04253 0.51 -0.6
607,918 + MPMX19_04253 0.51 +1.1
607,918 + MPMX19_04253 0.51 -0.6
607,918 + MPMX19_04253 0.51 +1.1
607,918 + MPMX19_04253 0.51 -0.2
607,918 + MPMX19_04253 0.51 +0.0
607,918 + MPMX19_04253 0.51 +0.2
607,918 + MPMX19_04253 0.51 -1.2
607,918 + MPMX19_04253 0.51 +0.6
607,919 - MPMX19_04253 0.51 -0.2
607,919 - MPMX19_04253 0.51 -1.2
607,919 - MPMX19_04253 0.51 -0.7
607,919 - MPMX19_04253 0.51 -1.6
607,919 - MPMX19_04253 0.51 +0.3
607,919 - MPMX19_04253 0.51 -0.9
607,966 + MPMX19_04253 0.55 -1.6
607,966 + MPMX19_04253 0.55 -0.4
607,966 + MPMX19_04253 0.55 +1.2
607,966 + MPMX19_04253 0.55 -1.2
607,966 + MPMX19_04253 0.55 -1.2
607,967 - MPMX19_04253 0.55 -0.3
607,967 - MPMX19_04253 0.55 -0.9
607,967 - MPMX19_04253 0.55 -0.7
607,967 - MPMX19_04253 0.55 -1.6
607,967 - MPMX19_04253 0.55 -1.2
607,967 - MPMX19_04253 0.55 -0.9
608,020 + MPMX19_04253 0.59 -0.4
608,020 + MPMX19_04253 0.59 +0.2
608,020 + MPMX19_04253 0.59 -0.2
608,020 + MPMX19_04253 0.59 -1.2
608,020 + MPMX19_04253 0.59 -1.2
608,020 + MPMX19_04253 0.59 -0.9
608,020 + MPMX19_04253 0.59 -1.2
608,020 + MPMX19_04253 0.59 -1.7
608,021 - MPMX19_04253 0.59 -1.2
608,021 - MPMX19_04253 0.59 -0.6
608,021 - MPMX19_04253 0.59 -0.2
608,021 - MPMX19_04253 0.59 +0.0
608,021 - MPMX19_04253 0.59 -1.5
608,021 - MPMX19_04253 0.59 +1.8
608,021 - MPMX19_04253 0.59 -0.9
608,021 - MPMX19_04253 0.59 -0.9
608,021 - MPMX19_04253 0.59 -0.2
608,050 + MPMX19_04253 0.61 -1.4
608,050 + MPMX19_04253 0.61 -1.2
608,050 + MPMX19_04253 0.61 +0.8
608,050 + MPMX19_04253 0.61 -0.2
608,051 - MPMX19_04253 0.61 +0.4
608,051 - MPMX19_04253 0.61 -0.6
608,051 - MPMX19_04253 0.61 -0.1
608,051 - MPMX19_04253 0.61 -0.6
608,179 + MPMX19_04253 0.71 -0.2
608,179 + MPMX19_04253 0.71 -0.2
608,180 - MPMX19_04253 0.71 +0.1
608,209 + MPMX19_04253 0.73 +1.4
608,209 + MPMX19_04253 0.73 -2.3
608,209 + MPMX19_04253 0.73 -0.4
608,209 + MPMX19_04253 0.73 +0.2
608,209 + MPMX19_04253 0.73 +0.4
608,209 + MPMX19_04253 0.73 -0.2
608,209 + MPMX19_04253 0.73 -0.6
608,209 + MPMX19_04253 0.73 -0.2
608,209 + MPMX19_04253 0.73 -0.4
608,209 + MPMX19_04253 0.73 +0.4
608,210 - MPMX19_04253 0.73 +0.0
608,210 - MPMX19_04253 0.73 +1.4
608,210 - MPMX19_04253 0.73 -0.9
608,210 - MPMX19_04253 0.73 -0.6
608,210 - MPMX19_04253 0.73 -0.4
608,210 - MPMX19_04253 0.73 -0.4
608,210 - MPMX19_04253 0.73 +0.4
608,210 - MPMX19_04253 0.73 -0.6
608,210 - MPMX19_04253 0.73 -1.2
608,278 + MPMX19_04253 0.78 -0.0
608,278 + MPMX19_04253 0.78 -1.2
608,278 + MPMX19_04253 0.78 -0.9
608,278 + MPMX19_04253 0.78 +0.4
608,278 + MPMX19_04253 0.78 -1.2
608,278 + MPMX19_04253 0.78 +1.4
608,278 + MPMX19_04253 0.78 -0.7
608,278 + MPMX19_04253 0.78 +1.4
608,279 - MPMX19_04253 0.78 -2.2
608,279 - MPMX19_04253 0.78 -0.6
608,279 - MPMX19_04253 0.78 -0.2
608,279 - MPMX19_04253 0.78 +0.8
608,279 - MPMX19_04253 0.78 +1.0
608,279 - MPMX19_04253 0.78 -0.6
608,279 - MPMX19_04253 0.78 -0.2
608,279 - MPMX19_04253 0.78 +0.2
608,279 - MPMX19_04253 0.78 +0.4
608,279 - MPMX19_04253 0.78 -0.9
608,527 + -0.8
608,655 + +0.2
608,655 + -0.9
608,655 + +0.4
608,656 - -1.5
608,656 - -0.6
608,656 - -0.7
608,656 - -0.9
608,656 - -1.7
608,656 - +1.0
608,702 - -1.2
608,702 - +0.7
608,702 - +0.4
608,702 - +1.7
608,736 + -0.3
608,736 + -1.0
608,736 + -1.4
608,736 + -0.7
608,736 + -1.4
608,736 + +1.2
608,736 + -1.2
608,736 + -1.7
608,736 + +0.7
608,737 - -0.2
608,737 - -0.9
608,738 + +0.8
608,864 - -0.2
608,921 + -0.2
608,940 - -0.2

Or see this region's nucleotide sequence