Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04044

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04043 and MPMX19_04044 are separated by 321 nucleotidesMPMX19_04044 and MPMX19_04045 are separated by 16 nucleotides MPMX19_04043: MPMX19_04043 - Aldehyde-alcohol dehydrogenase, at 343,223 to 345,907 _04043 MPMX19_04044: MPMX19_04044 - Arsenical-resistance protein Acr3, at 346,229 to 347,302 _04044 MPMX19_04045: MPMX19_04045 - Arsenate reductase, at 347,319 to 348,230 _04045 Position (kb) 346 347 348Strain fitness (log2 ratio) -2 -1 0 1 2 3at 345.892 kb on + strandat 345.892 kb on + strandat 345.892 kb on + strandat 345.988 kb on - strandat 345.991 kb on + strandat 345.992 kb on - strandat 345.992 kb on - strandat 345.992 kb on - strandat 346.000 kb on + strandat 346.000 kb on + strandat 346.001 kb on - strandat 346.001 kb on - strandat 346.034 kb on + strandat 346.034 kb on + strandat 346.132 kb on + strandat 346.136 kb on + strandat 346.136 kb on + strandat 346.137 kb on - strandat 346.163 kb on + strandat 346.163 kb on + strandat 346.163 kb on + strandat 346.251 kb on + strandat 346.464 kb on + strand, within MPMX19_04044at 346.464 kb on + strand, within MPMX19_04044at 346.486 kb on - strand, within MPMX19_04044at 346.486 kb on - strand, within MPMX19_04044at 346.486 kb on - strand, within MPMX19_04044at 346.705 kb on - strand, within MPMX19_04044at 346.705 kb on - strand, within MPMX19_04044at 346.705 kb on - strand, within MPMX19_04044at 346.705 kb on - strand, within MPMX19_04044at 346.705 kb on - strand, within MPMX19_04044at 346.705 kb on - strand, within MPMX19_04044at 346.705 kb on - strand, within MPMX19_04044at 346.705 kb on - strand, within MPMX19_04044at 346.833 kb on + strand, within MPMX19_04044at 346.833 kb on + strand, within MPMX19_04044at 346.833 kb on + strand, within MPMX19_04044at 346.833 kb on + strand, within MPMX19_04044at 346.833 kb on + strand, within MPMX19_04044at 346.833 kb on + strand, within MPMX19_04044at 346.834 kb on - strand, within MPMX19_04044at 346.834 kb on - strand, within MPMX19_04044at 346.834 kb on - strand, within MPMX19_04044at 346.834 kb on - strand, within MPMX19_04044at 346.834 kb on - strand, within MPMX19_04044at 346.834 kb on - strand, within MPMX19_04044at 346.834 kb on - strand, within MPMX19_04044at 346.920 kb on + strand, within MPMX19_04044at 346.920 kb on + strand, within MPMX19_04044at 346.920 kb on + strand, within MPMX19_04044at 346.920 kb on + strand, within MPMX19_04044at 346.920 kb on + strand, within MPMX19_04044at 346.920 kb on + strand, within MPMX19_04044at 346.920 kb on + strand, within MPMX19_04044at 346.920 kb on + strand, within MPMX19_04044at 347.241 kb on + strandat 347.241 kb on + strandat 347.241 kb on + strandat 347.241 kb on + strandat 347.241 kb on + strandat 347.241 kb on + strandat 347.242 kb on - strandat 347.242 kb on - strandat 347.283 kb on + strandat 347.283 kb on + strandat 347.284 kb on - strandat 347.284 kb on - strandat 347.320 kb on + strandat 347.320 kb on + strandat 347.579 kb on + strand, within MPMX19_04045at 347.580 kb on - strand, within MPMX19_04045at 347.580 kb on - strand, within MPMX19_04045at 347.580 kb on - strand, within MPMX19_04045at 347.672 kb on - strand, within MPMX19_04045at 347.672 kb on - strand, within MPMX19_04045at 347.672 kb on - strand, within MPMX19_04045at 347.672 kb on - strand, within MPMX19_04045at 347.672 kb on - strand, within MPMX19_04045at 347.672 kb on - strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 348.001 kb on + strand, within MPMX19_04045at 348.001 kb on + strand, within MPMX19_04045at 348.001 kb on + strand, within MPMX19_04045at 348.001 kb on + strand, within MPMX19_04045at 348.002 kb on - strand, within MPMX19_04045at 348.002 kb on - strand, within MPMX19_04045at 348.002 kb on - strand, within MPMX19_04045at 348.002 kb on - strand, within MPMX19_04045at 348.002 kb on - strand, within MPMX19_04045at 348.002 kb on - strand, within MPMX19_04045at 348.224 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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345,892 + -0.3
345,892 + +1.1
345,892 + -1.4
345,988 - -1.8
345,991 + +2.4
345,992 - -1.0
345,992 - +0.1
345,992 - -1.6
346,000 + -0.6
346,000 + -1.2
346,001 - -0.9
346,001 - -1.3
346,034 + -0.2
346,034 + -1.8
346,132 + +1.0
346,136 + -0.1
346,136 + +0.2
346,137 - -0.9
346,163 + -0.9
346,163 + +0.4
346,163 + -2.6
346,251 + -0.5
346,464 + MPMX19_04044 0.22 -0.6
346,464 + MPMX19_04044 0.22 -0.4
346,486 - MPMX19_04044 0.24 -0.9
346,486 - MPMX19_04044 0.24 -0.9
346,486 - MPMX19_04044 0.24 -1.4
346,705 - MPMX19_04044 0.44 +1.4
346,705 - MPMX19_04044 0.44 +0.6
346,705 - MPMX19_04044 0.44 -0.6
346,705 - MPMX19_04044 0.44 -0.4
346,705 - MPMX19_04044 0.44 -1.2
346,705 - MPMX19_04044 0.44 +0.1
346,705 - MPMX19_04044 0.44 -2.3
346,705 - MPMX19_04044 0.44 +0.4
346,833 + MPMX19_04044 0.56 -0.3
346,833 + MPMX19_04044 0.56 -0.0
346,833 + MPMX19_04044 0.56 -0.6
346,833 + MPMX19_04044 0.56 -0.9
346,833 + MPMX19_04044 0.56 +3.4
346,833 + MPMX19_04044 0.56 -1.8
346,834 - MPMX19_04044 0.56 -1.0
346,834 - MPMX19_04044 0.56 -0.6
346,834 - MPMX19_04044 0.56 -0.6
346,834 - MPMX19_04044 0.56 -0.7
346,834 - MPMX19_04044 0.56 -2.5
346,834 - MPMX19_04044 0.56 -1.2
346,834 - MPMX19_04044 0.56 -0.6
346,920 + MPMX19_04044 0.64 -1.2
346,920 + MPMX19_04044 0.64 +0.4
346,920 + MPMX19_04044 0.64 -0.6
346,920 + MPMX19_04044 0.64 -2.1
346,920 + MPMX19_04044 0.64 -2.1
346,920 + MPMX19_04044 0.64 -0.9
346,920 + MPMX19_04044 0.64 -1.6
346,920 + MPMX19_04044 0.64 -0.6
347,241 + +1.4
347,241 + +0.2
347,241 + -1.2
347,241 + -0.2
347,241 + -0.9
347,241 + -1.5
347,242 - -1.7
347,242 - -0.6
347,283 + -0.2
347,283 + -0.2
347,284 - -0.4
347,284 - -0.9
347,320 + -1.1
347,320 + +0.0
347,579 + MPMX19_04045 0.29 +0.2
347,580 - MPMX19_04045 0.29 -1.5
347,580 - MPMX19_04045 0.29 -0.6
347,580 - MPMX19_04045 0.29 -1.6
347,672 - MPMX19_04045 0.39 -0.6
347,672 - MPMX19_04045 0.39 -1.1
347,672 - MPMX19_04045 0.39 -0.9
347,672 - MPMX19_04045 0.39 -0.2
347,672 - MPMX19_04045 0.39 +0.8
347,672 - MPMX19_04045 0.39 -0.0
347,803 + MPMX19_04045 0.53 +1.5
347,803 + MPMX19_04045 0.53 -0.8
347,803 + MPMX19_04045 0.53 -2.6
347,803 + MPMX19_04045 0.53 -0.2
347,803 + MPMX19_04045 0.53 +0.4
347,803 + MPMX19_04045 0.53 +0.3
347,803 + MPMX19_04045 0.53 -1.5
347,803 + MPMX19_04045 0.53 -0.6
347,804 - MPMX19_04045 0.53 -0.4
347,804 - MPMX19_04045 0.53 -0.5
347,804 - MPMX19_04045 0.53 -0.7
347,804 - MPMX19_04045 0.53 -1.8
347,804 - MPMX19_04045 0.53 +1.0
347,804 - MPMX19_04045 0.53 -0.7
347,804 - MPMX19_04045 0.53 -1.3
347,804 - MPMX19_04045 0.53 -1.8
348,001 + MPMX19_04045 0.75 -0.7
348,001 + MPMX19_04045 0.75 -0.8
348,001 + MPMX19_04045 0.75 +0.6
348,001 + MPMX19_04045 0.75 -0.6
348,002 - MPMX19_04045 0.75 -0.1
348,002 - MPMX19_04045 0.75 +0.6
348,002 - MPMX19_04045 0.75 -0.2
348,002 - MPMX19_04045 0.75 +0.4
348,002 - MPMX19_04045 0.75 -1.9
348,002 - MPMX19_04045 0.75 -1.8
348,224 + -0.1

Or see this region's nucleotide sequence