Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03386 and MPMX19_03387 are separated by 124 nucleotides MPMX19_03387 and MPMX19_03388 overlap by 4 nucleotides MPMX19_03388 and MPMX19_03389 overlap by 13 nucleotides
MPMX19_03386: MPMX19_03386 - HTH-type transcriptional activator RhaR, at 770,335 to 771,210
_03386
MPMX19_03387: MPMX19_03387 - hypothetical protein, at 771,335 to 774,394
_03387
MPMX19_03388: MPMX19_03388 - 6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha, at 774,391 to 775,227
_03388
MPMX19_03389: MPMX19_03389 - Carbon monoxide dehydrogenase small chain, at 775,215 to 775,745
_03389
Position (kb) 771
772
773
774
775 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 770.488 kb on + strand, within MPMX19_03386 at 770.488 kb on + strand, within MPMX19_03386 at 770.489 kb on - strand, within MPMX19_03386 at 770.542 kb on + strand, within MPMX19_03386 at 770.542 kb on + strand, within MPMX19_03386 at 770.542 kb on + strand, within MPMX19_03386 at 770.542 kb on + strand, within MPMX19_03386 at 770.542 kb on + strand, within MPMX19_03386 at 770.542 kb on + strand, within MPMX19_03386 at 770.542 kb on + strand, within MPMX19_03386 at 770.542 kb on + strand, within MPMX19_03386 at 770.543 kb on - strand, within MPMX19_03386 at 770.543 kb on - strand, within MPMX19_03386 at 770.543 kb on - strand, within MPMX19_03386 at 770.543 kb on - strand, within MPMX19_03386 at 770.543 kb on - strand, within MPMX19_03386 at 770.543 kb on - strand, within MPMX19_03386 at 770.587 kb on + strand, within MPMX19_03386 at 770.587 kb on + strand, within MPMX19_03386 at 770.587 kb on + strand, within MPMX19_03386 at 770.587 kb on + strand, within MPMX19_03386 at 770.587 kb on + strand, within MPMX19_03386 at 770.587 kb on + strand, within MPMX19_03386 at 770.587 kb on + strand, within MPMX19_03386 at 770.587 kb on + strand, within MPMX19_03386 at 770.588 kb on - strand, within MPMX19_03386 at 770.588 kb on - strand, within MPMX19_03386 at 770.588 kb on - strand, within MPMX19_03386 at 770.588 kb on - strand, within MPMX19_03386 at 770.588 kb on - strand, within MPMX19_03386 at 770.588 kb on - strand, within MPMX19_03386 at 770.588 kb on - strand, within MPMX19_03386 at 770.683 kb on + strand, within MPMX19_03386 at 770.683 kb on + strand, within MPMX19_03386 at 770.684 kb on - strand, within MPMX19_03386 at 770.684 kb on - strand, within MPMX19_03386 at 770.684 kb on - strand, within MPMX19_03386 at 770.684 kb on - strand, within MPMX19_03386 at 770.684 kb on - strand, within MPMX19_03386 at 770.684 kb on - strand, within MPMX19_03386 at 770.725 kb on + strand, within MPMX19_03386 at 770.725 kb on + strand, within MPMX19_03386 at 770.725 kb on + strand, within MPMX19_03386 at 770.726 kb on - strand, within MPMX19_03386 at 770.726 kb on - strand, within MPMX19_03386 at 770.726 kb on - strand, within MPMX19_03386 at 770.726 kb on - strand, within MPMX19_03386 at 770.827 kb on + strand, within MPMX19_03386 at 770.827 kb on + strand, within MPMX19_03386 at 770.827 kb on + strand, within MPMX19_03386 at 770.827 kb on + strand, within MPMX19_03386 at 770.827 kb on + strand, within MPMX19_03386 at 770.828 kb on - strand, within MPMX19_03386 at 770.828 kb on - strand, within MPMX19_03386 at 770.828 kb on - strand, within MPMX19_03386 at 770.828 kb on - strand, within MPMX19_03386 at 770.983 kb on - strand, within MPMX19_03386 at 770.995 kb on + strand, within MPMX19_03386 at 770.995 kb on + strand, within MPMX19_03386 at 770.995 kb on + strand, within MPMX19_03386 at 770.996 kb on - strand, within MPMX19_03386 at 770.996 kb on - strand, within MPMX19_03386 at 770.996 kb on - strand, within MPMX19_03386 at 771.145 kb on + strand at 771.145 kb on + strand at 771.225 kb on + strand at 771.242 kb on + strand at 771.243 kb on - strand at 771.243 kb on - strand at 771.256 kb on + strand at 771.256 kb on + strand at 771.261 kb on + strand at 771.261 kb on + strand at 771.281 kb on + strand at 771.474 kb on - strand at 771.474 kb on - strand at 771.740 kb on + strand, within MPMX19_03387 at 771.740 kb on + strand, within MPMX19_03387 at 771.741 kb on - strand, within MPMX19_03387 at 771.741 kb on - strand, within MPMX19_03387 at 771.741 kb on - strand, within MPMX19_03387 at 771.779 kb on + strand, within MPMX19_03387 at 771.779 kb on + strand, within MPMX19_03387 at 771.947 kb on + strand, within MPMX19_03387 at 771.948 kb on - strand, within MPMX19_03387 at 771.998 kb on + strand, within MPMX19_03387 at 771.999 kb on - strand, within MPMX19_03387 at 771.999 kb on - strand, within MPMX19_03387 at 771.999 kb on - strand, within MPMX19_03387 at 772.019 kb on + strand, within MPMX19_03387 at 772.019 kb on + strand, within MPMX19_03387 at 772.019 kb on + strand, within MPMX19_03387 at 772.020 kb on - strand, within MPMX19_03387 at 772.163 kb on + strand, within MPMX19_03387 at 772.163 kb on + strand, within MPMX19_03387 at 772.163 kb on + strand, within MPMX19_03387 at 772.163 kb on + strand, within MPMX19_03387 at 772.163 kb on + strand, within MPMX19_03387 at 772.163 kb on + strand, within MPMX19_03387 at 772.163 kb on + strand, within MPMX19_03387 at 772.163 kb on + strand, within MPMX19_03387 at 772.164 kb on - strand, within MPMX19_03387 at 772.164 kb on - strand, within MPMX19_03387 at 772.164 kb on - strand, within MPMX19_03387 at 772.164 kb on - strand, within MPMX19_03387 at 772.164 kb on - strand, within MPMX19_03387 at 772.164 kb on - strand, within MPMX19_03387 at 772.164 kb on - strand, within MPMX19_03387 at 772.164 kb on - strand, within MPMX19_03387 at 772.349 kb on + strand, within MPMX19_03387 at 772.349 kb on + strand, within MPMX19_03387 at 772.349 kb on + strand, within MPMX19_03387 at 772.350 kb on - strand, within MPMX19_03387 at 772.350 kb on - strand, within MPMX19_03387 at 772.379 kb on + strand, within MPMX19_03387 at 772.409 kb on + strand, within MPMX19_03387 at 772.409 kb on + strand, within MPMX19_03387 at 772.409 kb on + strand, within MPMX19_03387 at 772.410 kb on - strand, within MPMX19_03387 at 772.502 kb on + strand, within MPMX19_03387 at 772.502 kb on + strand, within MPMX19_03387 at 772.502 kb on + strand, within MPMX19_03387 at 772.502 kb on + strand, within MPMX19_03387 at 772.503 kb on - strand, within MPMX19_03387 at 772.503 kb on - strand, within MPMX19_03387 at 772.503 kb on - strand, within MPMX19_03387 at 772.503 kb on - strand, within MPMX19_03387 at 772.505 kb on + strand, within MPMX19_03387 at 772.506 kb on - strand, within MPMX19_03387 at 772.506 kb on - strand, within MPMX19_03387 at 772.506 kb on - strand, within MPMX19_03387 at 772.605 kb on - strand, within MPMX19_03387 at 772.644 kb on - strand, within MPMX19_03387 at 772.734 kb on - strand, within MPMX19_03387 at 772.745 kb on + strand, within MPMX19_03387 at 772.784 kb on + strand, within MPMX19_03387 at 772.784 kb on + strand, within MPMX19_03387 at 772.784 kb on + strand, within MPMX19_03387 at 772.784 kb on + strand, within MPMX19_03387 at 772.784 kb on + strand, within MPMX19_03387 at 772.784 kb on + strand, within MPMX19_03387 at 772.784 kb on + strand, within MPMX19_03387 at 772.785 kb on - strand, within MPMX19_03387 at 772.785 kb on - strand, within MPMX19_03387 at 772.785 kb on - strand, within MPMX19_03387 at 772.785 kb on - strand, within MPMX19_03387 at 773.039 kb on + strand, within MPMX19_03387 at 773.039 kb on + strand, within MPMX19_03387 at 773.039 kb on + strand, within MPMX19_03387 at 773.039 kb on + strand, within MPMX19_03387 at 773.040 kb on - strand, within MPMX19_03387 at 773.355 kb on - strand, within MPMX19_03387 at 773.355 kb on - strand, within MPMX19_03387 at 773.355 kb on - strand, within MPMX19_03387 at 773.424 kb on - strand, within MPMX19_03387 at 773.424 kb on - strand, within MPMX19_03387 at 773.424 kb on - strand, within MPMX19_03387 at 773.528 kb on + strand, within MPMX19_03387 at 773.528 kb on + strand, within MPMX19_03387 at 773.528 kb on + strand, within MPMX19_03387 at 773.528 kb on + strand, within MPMX19_03387 at 773.528 kb on + strand, within MPMX19_03387 at 773.528 kb on + strand, within MPMX19_03387 at 773.529 kb on - strand, within MPMX19_03387 at 773.529 kb on - strand, within MPMX19_03387 at 773.529 kb on - strand, within MPMX19_03387 at 773.529 kb on - strand, within MPMX19_03387 at 773.529 kb on - strand, within MPMX19_03387 at 773.529 kb on - strand, within MPMX19_03387 at 773.529 kb on - strand, within MPMX19_03387 at 773.529 kb on - strand, within MPMX19_03387 at 773.529 kb on - strand, within MPMX19_03387 at 773.534 kb on + strand, within MPMX19_03387 at 773.534 kb on + strand, within MPMX19_03387 at 773.534 kb on + strand, within MPMX19_03387 at 773.534 kb on + strand, within MPMX19_03387 at 773.534 kb on + strand, within MPMX19_03387 at 773.534 kb on + strand, within MPMX19_03387 at 773.535 kb on - strand, within MPMX19_03387 at 773.535 kb on - strand, within MPMX19_03387 at 773.576 kb on + strand, within MPMX19_03387 at 773.576 kb on + strand, within MPMX19_03387 at 773.576 kb on + strand, within MPMX19_03387 at 773.577 kb on - strand, within MPMX19_03387 at 773.577 kb on - strand, within MPMX19_03387 at 773.751 kb on + strand, within MPMX19_03387 at 773.751 kb on + strand, within MPMX19_03387 at 773.751 kb on + strand, within MPMX19_03387 at 773.751 kb on + strand, within MPMX19_03387 at 773.752 kb on - strand, within MPMX19_03387 at 773.752 kb on - strand, within MPMX19_03387 at 774.065 kb on + strand, within MPMX19_03387 at 774.065 kb on + strand, within MPMX19_03387 at 774.065 kb on + strand, within MPMX19_03387 at 774.066 kb on - strand, within MPMX19_03387 at 774.066 kb on - strand, within MPMX19_03387 at 774.066 kb on - strand, within MPMX19_03387 at 774.066 kb on - strand, within MPMX19_03387 at 774.066 kb on - strand, within MPMX19_03387 at 774.066 kb on - strand, within MPMX19_03387 at 774.066 kb on - strand, within MPMX19_03387 at 774.066 kb on - strand, within MPMX19_03387 at 774.066 kb on - strand, within MPMX19_03387 at 774.066 kb on - strand, within MPMX19_03387 at 774.206 kb on + strand at 774.206 kb on + strand at 774.207 kb on - strand at 774.207 kb on - strand at 774.213 kb on - strand at 774.213 kb on - strand at 774.213 kb on - strand at 774.412 kb on + strand at 774.412 kb on + strand at 774.412 kb on + strand at 774.412 kb on + strand at 774.412 kb on + strand at 774.412 kb on + strand at 775.269 kb on + strand, within MPMX19_03389
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 770,488 + MPMX19_03386 0.17 +0.8 770,488 + MPMX19_03386 0.17 -0.8 770,489 - MPMX19_03386 0.18 +0.3 770,542 + MPMX19_03386 0.24 +0.4 770,542 + MPMX19_03386 0.24 +0.3 770,542 + MPMX19_03386 0.24 -2.0 770,542 + MPMX19_03386 0.24 +0.8 770,542 + MPMX19_03386 0.24 -0.5 770,542 + MPMX19_03386 0.24 +0.5 770,542 + MPMX19_03386 0.24 -0.3 770,542 + MPMX19_03386 0.24 -0.5 770,543 - MPMX19_03386 0.24 -0.7 770,543 - MPMX19_03386 0.24 -0.2 770,543 - MPMX19_03386 0.24 -0.5 770,543 - MPMX19_03386 0.24 -1.3 770,543 - MPMX19_03386 0.24 -1.1 770,543 - MPMX19_03386 0.24 -1.1 770,587 + MPMX19_03386 0.29 +0.9 770,587 + MPMX19_03386 0.29 -2.5 770,587 + MPMX19_03386 0.29 -0.1 770,587 + MPMX19_03386 0.29 +0.5 770,587 + MPMX19_03386 0.29 -0.2 770,587 + MPMX19_03386 0.29 -0.8 770,587 + MPMX19_03386 0.29 -1.5 770,587 + MPMX19_03386 0.29 -1.3 770,588 - MPMX19_03386 0.29 -1.1 770,588 - MPMX19_03386 0.29 -1.7 770,588 - MPMX19_03386 0.29 -0.6 770,588 - MPMX19_03386 0.29 -0.3 770,588 - MPMX19_03386 0.29 -0.5 770,588 - MPMX19_03386 0.29 -1.7 770,588 - MPMX19_03386 0.29 -1.1 770,683 + MPMX19_03386 0.40 -0.6 770,683 + MPMX19_03386 0.40 -0.3 770,684 - MPMX19_03386 0.40 +1.3 770,684 - MPMX19_03386 0.40 -0.8 770,684 - MPMX19_03386 0.40 -0.1 770,684 - MPMX19_03386 0.40 +0.3 770,684 - MPMX19_03386 0.40 +0.9 770,684 - MPMX19_03386 0.40 -3.0 770,725 + MPMX19_03386 0.45 -1.8 770,725 + MPMX19_03386 0.45 +1.1 770,725 + MPMX19_03386 0.45 -1.3 770,726 - MPMX19_03386 0.45 +1.0 770,726 - MPMX19_03386 0.45 -1.0 770,726 - MPMX19_03386 0.45 -0.8 770,726 - MPMX19_03386 0.45 -0.5 770,827 + MPMX19_03386 0.56 +0.3 770,827 + MPMX19_03386 0.56 -1.3 770,827 + MPMX19_03386 0.56 -0.4 770,827 + MPMX19_03386 0.56 -0.5 770,827 + MPMX19_03386 0.56 -2.2 770,828 - MPMX19_03386 0.56 -0.5 770,828 - MPMX19_03386 0.56 -0.5 770,828 - MPMX19_03386 0.56 -0.5 770,828 - MPMX19_03386 0.56 -1.1 770,983 - MPMX19_03386 0.74 -1.1 770,995 + MPMX19_03386 0.75 -0.8 770,995 + MPMX19_03386 0.75 -0.1 770,995 + MPMX19_03386 0.75 -1.1 770,996 - MPMX19_03386 0.75 +0.5 770,996 - MPMX19_03386 0.75 -0.1 770,996 - MPMX19_03386 0.75 -1.1 771,145 + +0.8 771,145 + +0.3 771,225 + -0.2 771,242 + +0.8 771,243 - -0.3 771,243 - -0.3 771,256 + +0.1 771,256 + -1.5 771,261 + +0.5 771,261 + -0.1 771,281 + -1.0 771,474 - +1.0 771,474 - -2.0 771,740 + MPMX19_03387 0.13 -3.1 771,740 + MPMX19_03387 0.13 -0.7 771,741 - MPMX19_03387 0.13 -0.5 771,741 - MPMX19_03387 0.13 -1.7 771,741 - MPMX19_03387 0.13 -0.1 771,779 + MPMX19_03387 0.15 -0.5 771,779 + MPMX19_03387 0.15 +0.5 771,947 + MPMX19_03387 0.20 -0.8 771,948 - MPMX19_03387 0.20 -1.3 771,998 + MPMX19_03387 0.22 -1.1 771,999 - MPMX19_03387 0.22 -0.7 771,999 - MPMX19_03387 0.22 -1.5 771,999 - MPMX19_03387 0.22 +0.2 772,019 + MPMX19_03387 0.22 -0.5 772,019 + MPMX19_03387 0.22 -1.1 772,019 + MPMX19_03387 0.22 +0.1 772,020 - MPMX19_03387 0.22 -0.1 772,163 + MPMX19_03387 0.27 -0.5 772,163 + MPMX19_03387 0.27 -0.8 772,163 + MPMX19_03387 0.27 -1.3 772,163 + MPMX19_03387 0.27 -1.7 772,163 + MPMX19_03387 0.27 -1.8 772,163 + MPMX19_03387 0.27 +0.7 772,163 + MPMX19_03387 0.27 -0.4 772,163 + MPMX19_03387 0.27 -1.4 772,164 - MPMX19_03387 0.27 +1.0 772,164 - MPMX19_03387 0.27 -0.8 772,164 - MPMX19_03387 0.27 -1.5 772,164 - MPMX19_03387 0.27 +0.5 772,164 - MPMX19_03387 0.27 +0.5 772,164 - MPMX19_03387 0.27 -1.2 772,164 - MPMX19_03387 0.27 -1.8 772,164 - MPMX19_03387 0.27 -1.3 772,349 + MPMX19_03387 0.33 -0.5 772,349 + MPMX19_03387 0.33 -1.1 772,349 + MPMX19_03387 0.33 -1.1 772,350 - MPMX19_03387 0.33 -0.5 772,350 - MPMX19_03387 0.33 -0.2 772,379 + MPMX19_03387 0.34 -0.9 772,409 + MPMX19_03387 0.35 +0.2 772,409 + MPMX19_03387 0.35 +0.5 772,409 + MPMX19_03387 0.35 -0.8 772,410 - MPMX19_03387 0.35 -0.8 772,502 + MPMX19_03387 0.38 -0.8 772,502 + MPMX19_03387 0.38 -0.8 772,502 + MPMX19_03387 0.38 -0.1 772,502 + MPMX19_03387 0.38 -0.5 772,503 - MPMX19_03387 0.38 -0.8 772,503 - MPMX19_03387 0.38 -0.2 772,503 - MPMX19_03387 0.38 -0.8 772,503 - MPMX19_03387 0.38 -0.7 772,505 + MPMX19_03387 0.38 -0.5 772,506 - MPMX19_03387 0.38 -0.1 772,506 - MPMX19_03387 0.38 -1.3 772,506 - MPMX19_03387 0.38 -1.5 772,605 - MPMX19_03387 0.42 -0.5 772,644 - MPMX19_03387 0.43 -1.3 772,734 - MPMX19_03387 0.46 -0.2 772,745 + MPMX19_03387 0.46 -1.1 772,784 + MPMX19_03387 0.47 -1.4 772,784 + MPMX19_03387 0.47 +0.8 772,784 + MPMX19_03387 0.47 -1.3 772,784 + MPMX19_03387 0.47 +0.1 772,784 + MPMX19_03387 0.47 -0.4 772,784 + MPMX19_03387 0.47 +0.5 772,784 + MPMX19_03387 0.47 -0.8 772,785 - MPMX19_03387 0.47 +0.5 772,785 - MPMX19_03387 0.47 -0.4 772,785 - MPMX19_03387 0.47 -1.5 772,785 - MPMX19_03387 0.47 +0.6 773,039 + MPMX19_03387 0.56 -0.9 773,039 + MPMX19_03387 0.56 -1.1 773,039 + MPMX19_03387 0.56 -1.2 773,039 + MPMX19_03387 0.56 -2.1 773,040 - MPMX19_03387 0.56 +0.5 773,355 - MPMX19_03387 0.66 +0.1 773,355 - MPMX19_03387 0.66 +0.9 773,355 - MPMX19_03387 0.66 +0.9 773,424 - MPMX19_03387 0.68 +1.6 773,424 - MPMX19_03387 0.68 -0.5 773,424 - MPMX19_03387 0.68 -0.1 773,528 + MPMX19_03387 0.72 -0.8 773,528 + MPMX19_03387 0.72 +1.5 773,528 + MPMX19_03387 0.72 -0.8 773,528 + MPMX19_03387 0.72 -1.7 773,528 + MPMX19_03387 0.72 -0.1 773,528 + MPMX19_03387 0.72 -0.6 773,529 - MPMX19_03387 0.72 -0.4 773,529 - MPMX19_03387 0.72 -0.5 773,529 - MPMX19_03387 0.72 -1.5 773,529 - MPMX19_03387 0.72 -0.9 773,529 - MPMX19_03387 0.72 -0.5 773,529 - MPMX19_03387 0.72 -1.1 773,529 - MPMX19_03387 0.72 +0.5 773,529 - MPMX19_03387 0.72 +2.1 773,529 - MPMX19_03387 0.72 -1.3 773,534 + MPMX19_03387 0.72 -0.1 773,534 + MPMX19_03387 0.72 +0.2 773,534 + MPMX19_03387 0.72 -0.1 773,534 + MPMX19_03387 0.72 -0.8 773,534 + MPMX19_03387 0.72 +0.5 773,534 + MPMX19_03387 0.72 -0.8 773,535 - MPMX19_03387 0.72 -0.8 773,535 - MPMX19_03387 0.72 +0.5 773,576 + MPMX19_03387 0.73 +3.1 773,576 + MPMX19_03387 0.73 +0.5 773,576 + MPMX19_03387 0.73 +0.1 773,577 - MPMX19_03387 0.73 -0.8 773,577 - MPMX19_03387 0.73 -0.2 773,751 + MPMX19_03387 0.79 -0.1 773,751 + MPMX19_03387 0.79 -0.1 773,751 + MPMX19_03387 0.79 -0.2 773,751 + MPMX19_03387 0.79 -1.3 773,752 - MPMX19_03387 0.79 -1.0 773,752 - MPMX19_03387 0.79 -0.6 774,065 + MPMX19_03387 0.89 +0.3 774,065 + MPMX19_03387 0.89 -1.5 774,065 + MPMX19_03387 0.89 +0.5 774,066 - MPMX19_03387 0.89 -0.9 774,066 - MPMX19_03387 0.89 +0.8 774,066 - MPMX19_03387 0.89 +0.9 774,066 - MPMX19_03387 0.89 +2.2 774,066 - MPMX19_03387 0.89 -0.1 774,066 - MPMX19_03387 0.89 -1.8 774,066 - MPMX19_03387 0.89 +0.9 774,066 - MPMX19_03387 0.89 -1.5 774,066 - MPMX19_03387 0.89 -1.1 774,066 - MPMX19_03387 0.89 -0.8 774,206 + -1.3 774,206 + +1.5 774,207 - -0.1 774,207 - -0.1 774,213 - +0.8 774,213 - -0.8 774,213 - +0.5 774,412 + -1.5 774,412 + -0.1 774,412 + +2.1 774,412 + -2.8 774,412 + -0.1 774,412 + -0.3 775,269 + MPMX19_03389 0.10 -0.5
Or see this region's nucleotide sequence