Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03172 and MPMX19_03173 are separated by 459 nucleotides MPMX19_03173 and MPMX19_03174 are separated by 114 nucleotides MPMX19_03174 and MPMX19_03175 are separated by 23 nucleotides MPMX19_03175 and MPMX19_03176 are separated by 336 nucleotides
MPMX19_03172: MPMX19_03172 - Pyruvate dehydrogenase E1 component, at 466,665 to 469,076
_03172
MPMX19_03173: MPMX19_03173 - 16S ribosomal RNA, at 469,536 to 471,019
_03173
MPMX19_03174: MPMX19_03174 - tRNA-Ile, at 471,134 to 471,210
_03174
MPMX19_03175: MPMX19_03175 - tRNA-Ala, at 471,234 to 471,309
_03175
MPMX19_03176: MPMX19_03176 - 23S ribosomal RNA, at 471,646 to 474,379
_03176
Position (kb) 469
470
471
472 Strain fitness (log2 ratio) -2
-1
0
1
2 at 468.612 kb on + strand, within MPMX19_03172 at 468.612 kb on + strand, within MPMX19_03172 at 468.613 kb on - strand, within MPMX19_03172 at 468.613 kb on - strand, within MPMX19_03172 at 468.613 kb on - strand, within MPMX19_03172 at 468.657 kb on + strand, within MPMX19_03172 at 468.658 kb on - strand, within MPMX19_03172 at 468.658 kb on - strand, within MPMX19_03172 at 468.658 kb on - strand, within MPMX19_03172 at 468.658 kb on - strand, within MPMX19_03172 at 468.658 kb on - strand, within MPMX19_03172 at 468.802 kb on + strand, within MPMX19_03172 at 468.802 kb on + strand, within MPMX19_03172 at 468.802 kb on + strand, within MPMX19_03172 at 468.802 kb on + strand, within MPMX19_03172 at 468.803 kb on - strand, within MPMX19_03172 at 468.803 kb on - strand, within MPMX19_03172 at 468.822 kb on - strand, within MPMX19_03172 at 468.981 kb on + strand at 468.981 kb on + strand at 468.981 kb on + strand at 468.982 kb on - strand at 468.982 kb on - strand at 468.982 kb on - strand at 468.982 kb on - strand at 468.990 kb on + strand at 468.990 kb on + strand at 468.990 kb on + strand at 468.991 kb on - strand at 468.991 kb on - strand at 469.085 kb on + strand at 469.086 kb on - strand at 469.086 kb on - strand at 469.086 kb on - strand at 469.180 kb on - strand at 469.180 kb on - strand at 469.180 kb on - strand at 469.180 kb on - strand at 469.180 kb on - strand at 469.180 kb on - strand at 469.182 kb on - strand at 469.182 kb on - strand at 469.182 kb on - strand at 469.182 kb on - strand at 471.021 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 468,612 + MPMX19_03172 0.81 -0.0 468,612 + MPMX19_03172 0.81 -1.9 468,613 - MPMX19_03172 0.81 -0.2 468,613 - MPMX19_03172 0.81 +1.0 468,613 - MPMX19_03172 0.81 -0.9 468,657 + MPMX19_03172 0.83 +0.6 468,658 - MPMX19_03172 0.83 -0.1 468,658 - MPMX19_03172 0.83 -1.2 468,658 - MPMX19_03172 0.83 -0.4 468,658 - MPMX19_03172 0.83 -2.1 468,658 - MPMX19_03172 0.83 -1.1 468,802 + MPMX19_03172 0.89 -1.9 468,802 + MPMX19_03172 0.89 +0.6 468,802 + MPMX19_03172 0.89 +1.0 468,802 + MPMX19_03172 0.89 -0.4 468,803 - MPMX19_03172 0.89 -0.4 468,803 - MPMX19_03172 0.89 +0.1 468,822 - MPMX19_03172 0.89 +0.4 468,981 + -1.1 468,981 + -2.5 468,981 + -0.7 468,982 - -0.4 468,982 - +1.6 468,982 - -0.0 468,982 - +0.6 468,990 + -0.9 468,990 + +0.6 468,990 + -1.8 468,991 - -0.2 468,991 - +1.6 469,085 + -0.4 469,086 - -0.7 469,086 - -2.0 469,086 - -1.1 469,180 - -0.6 469,180 - -0.4 469,180 - +1.6 469,180 - -0.4 469,180 - -2.2 469,180 - +0.7 469,182 - -0.4 469,182 - +1.6 469,182 - +1.3 469,182 - +2.0 471,021 + +2.0
Or see this region's nucleotide sequence