Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03049 and MPMX19_03050 are separated by 28 nucleotides MPMX19_03050 and MPMX19_03051 are separated by 50 nucleotides MPMX19_03051 and MPMX19_03052 are separated by 17 nucleotides
MPMX19_03049: MPMX19_03049 - putative protease YhbU, at 313,405 to 314,391
_03049
MPMX19_03050: MPMX19_03050 - hypothetical protein, at 314,420 to 315,331
_03050
MPMX19_03051: MPMX19_03051 - Sec-independent protein translocase protein TatA, at 315,382 to 315,549
_03051
MPMX19_03052: MPMX19_03052 - hypothetical protein, at 315,567 to 316,577
_03052
Position (kb) 315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 314.390 kb on - strand at 314.390 kb on - strand at 314.486 kb on + strand at 314.486 kb on + strand at 314.487 kb on - strand at 314.487 kb on - strand at 314.792 kb on + strand, within MPMX19_03050 at 314.792 kb on + strand, within MPMX19_03050 at 314.792 kb on + strand, within MPMX19_03050 at 314.792 kb on + strand, within MPMX19_03050 at 314.792 kb on + strand, within MPMX19_03050 at 314.792 kb on + strand, within MPMX19_03050 at 314.792 kb on + strand, within MPMX19_03050 at 314.792 kb on + strand, within MPMX19_03050 at 314.793 kb on - strand, within MPMX19_03050 at 314.793 kb on - strand, within MPMX19_03050 at 314.793 kb on - strand, within MPMX19_03050 at 314.793 kb on - strand, within MPMX19_03050 at 314.967 kb on - strand, within MPMX19_03050 at 315.296 kb on + strand at 315.296 kb on + strand at 315.296 kb on + strand at 315.296 kb on + strand at 315.296 kb on + strand at 315.296 kb on + strand at 315.297 kb on - strand at 315.297 kb on - strand at 315.297 kb on - strand at 315.297 kb on - strand at 315.628 kb on + strand at 315.629 kb on - strand at 315.809 kb on - strand, within MPMX19_03052 at 316.006 kb on + strand, within MPMX19_03052 at 316.006 kb on + strand, within MPMX19_03052 at 316.006 kb on + strand, within MPMX19_03052 at 316.006 kb on + strand, within MPMX19_03052 at 316.006 kb on + strand, within MPMX19_03052 at 316.006 kb on + strand, within MPMX19_03052 at 316.006 kb on + strand, within MPMX19_03052 at 316.006 kb on + strand, within MPMX19_03052 at 316.007 kb on - strand, within MPMX19_03052 at 316.007 kb on - strand, within MPMX19_03052 at 316.007 kb on - strand, within MPMX19_03052 at 316.007 kb on - strand, within MPMX19_03052 at 316.007 kb on - strand, within MPMX19_03052 at 316.007 kb on - strand, within MPMX19_03052 at 316.007 kb on - strand, within MPMX19_03052 at 316.174 kb on + strand, within MPMX19_03052 at 316.174 kb on + strand, within MPMX19_03052 at 316.174 kb on + strand, within MPMX19_03052 at 316.174 kb on + strand, within MPMX19_03052 at 316.174 kb on + strand, within MPMX19_03052 at 316.174 kb on + strand, within MPMX19_03052 at 316.174 kb on + strand, within MPMX19_03052 at 316.174 kb on + strand, within MPMX19_03052 at 316.174 kb on + strand, within MPMX19_03052 at 316.175 kb on - strand, within MPMX19_03052 at 316.175 kb on - strand, within MPMX19_03052 at 316.175 kb on - strand, within MPMX19_03052 at 316.175 kb on - strand, within MPMX19_03052 at 316.175 kb on - strand, within MPMX19_03052 at 316.175 kb on - strand, within MPMX19_03052
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 314,390 - -2.4 314,390 - +0.5 314,486 + +1.5 314,486 + -1.1 314,487 - -0.0 314,487 - -0.1 314,792 + MPMX19_03050 0.41 -1.5 314,792 + MPMX19_03050 0.41 -0.2 314,792 + MPMX19_03050 0.41 +0.2 314,792 + MPMX19_03050 0.41 +1.2 314,792 + MPMX19_03050 0.41 -2.0 314,792 + MPMX19_03050 0.41 -0.5 314,792 + MPMX19_03050 0.41 -1.8 314,792 + MPMX19_03050 0.41 -1.8 314,793 - MPMX19_03050 0.41 -0.2 314,793 - MPMX19_03050 0.41 -1.1 314,793 - MPMX19_03050 0.41 -2.6 314,793 - MPMX19_03050 0.41 -1.3 314,967 - MPMX19_03050 0.60 -1.7 315,296 + +0.5 315,296 + +0.9 315,296 + +0.8 315,296 + +1.2 315,296 + -0.4 315,296 + +0.2 315,297 - -0.1 315,297 - +0.1 315,297 - +0.2 315,297 - +0.6 315,628 + -1.3 315,629 - -0.2 315,809 - MPMX19_03052 0.24 -1.3 316,006 + MPMX19_03052 0.43 -0.6 316,006 + MPMX19_03052 0.43 -0.8 316,006 + MPMX19_03052 0.43 -0.8 316,006 + MPMX19_03052 0.43 -1.1 316,006 + MPMX19_03052 0.43 -1.8 316,006 + MPMX19_03052 0.43 +1.0 316,006 + MPMX19_03052 0.43 -2.3 316,006 + MPMX19_03052 0.43 -1.1 316,007 - MPMX19_03052 0.44 -0.5 316,007 - MPMX19_03052 0.44 +0.8 316,007 - MPMX19_03052 0.44 +1.0 316,007 - MPMX19_03052 0.44 -0.5 316,007 - MPMX19_03052 0.44 -1.8 316,007 - MPMX19_03052 0.44 -0.1 316,007 - MPMX19_03052 0.44 -0.7 316,174 + MPMX19_03052 0.60 +0.9 316,174 + MPMX19_03052 0.60 -0.1 316,174 + MPMX19_03052 0.60 +0.5 316,174 + MPMX19_03052 0.60 -3.1 316,174 + MPMX19_03052 0.60 +0.9 316,174 + MPMX19_03052 0.60 -0.1 316,174 + MPMX19_03052 0.60 -0.5 316,174 + MPMX19_03052 0.60 -0.8 316,174 + MPMX19_03052 0.60 +1.5 316,175 - MPMX19_03052 0.60 -0.5 316,175 - MPMX19_03052 0.60 +0.6 316,175 - MPMX19_03052 0.60 +0.9 316,175 - MPMX19_03052 0.60 +0.2 316,175 - MPMX19_03052 0.60 -0.5 316,175 - MPMX19_03052 0.60 +0.0
Or see this region's nucleotide sequence