Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02785

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02783 and MPMX19_02784 are separated by 12 nucleotidesMPMX19_02784 and MPMX19_02785 overlap by 4 nucleotidesMPMX19_02785 and MPMX19_02786 are separated by 28 nucleotides MPMX19_02783: MPMX19_02783 - HTH-type transcriptional regulator DmlR, at 16,453 to 17,391 _02783 MPMX19_02784: MPMX19_02784 - phosphoglycerate mutase GpmB, at 17,404 to 18,117 _02784 MPMX19_02785: MPMX19_02785 - hypothetical protein, at 18,114 to 18,497 _02785 MPMX19_02786: MPMX19_02786 - hypothetical protein, at 18,526 to 19,581 _02786 Position (kb) 18 19Strain fitness (log2 ratio) -3 -2 -1 0 1at 17.266 kb on + strand, within MPMX19_02783at 17.266 kb on + strand, within MPMX19_02783at 17.266 kb on + strand, within MPMX19_02783at 17.266 kb on + strand, within MPMX19_02783at 17.266 kb on + strand, within MPMX19_02783at 17.267 kb on - strand, within MPMX19_02783at 17.267 kb on - strand, within MPMX19_02783at 17.267 kb on - strand, within MPMX19_02783at 17.267 kb on - strand, within MPMX19_02783at 17.267 kb on - strand, within MPMX19_02783at 17.267 kb on - strand, within MPMX19_02783at 17.267 kb on - strand, within MPMX19_02783at 17.274 kb on - strand, within MPMX19_02783at 17.274 kb on - strand, within MPMX19_02783at 17.312 kb on + strandat 17.312 kb on + strandat 17.385 kb on + strandat 17.389 kb on + strandat 17.389 kb on + strandat 17.390 kb on - strandat 17.390 kb on - strandat 17.390 kb on - strandat 17.390 kb on - strandat 17.561 kb on + strand, within MPMX19_02784at 17.775 kb on - strand, within MPMX19_02784at 17.775 kb on - strand, within MPMX19_02784at 17.775 kb on - strand, within MPMX19_02784at 17.775 kb on - strand, within MPMX19_02784at 17.775 kb on - strand, within MPMX19_02784at 17.775 kb on - strand, within MPMX19_02784at 17.780 kb on + strand, within MPMX19_02784at 17.780 kb on + strand, within MPMX19_02784at 17.780 kb on + strand, within MPMX19_02784at 17.780 kb on + strand, within MPMX19_02784at 17.780 kb on + strand, within MPMX19_02784at 17.780 kb on + strand, within MPMX19_02784at 17.780 kb on + strand, within MPMX19_02784at 17.780 kb on + strand, within MPMX19_02784at 17.780 kb on + strand, within MPMX19_02784at 17.780 kb on + strand, within MPMX19_02784at 17.780 kb on + strand, within MPMX19_02784at 17.780 kb on + strand, within MPMX19_02784at 17.780 kb on + strand, within MPMX19_02784at 17.781 kb on - strand, within MPMX19_02784at 17.781 kb on - strand, within MPMX19_02784at 17.781 kb on - strand, within MPMX19_02784at 17.781 kb on - strand, within MPMX19_02784at 17.781 kb on - strand, within MPMX19_02784at 17.781 kb on - strand, within MPMX19_02784at 17.781 kb on - strand, within MPMX19_02784at 17.781 kb on - strand, within MPMX19_02784at 17.781 kb on - strand, within MPMX19_02784at 18.038 kb on + strand, within MPMX19_02784at 18.038 kb on + strand, within MPMX19_02784at 18.038 kb on + strand, within MPMX19_02784at 18.038 kb on + strand, within MPMX19_02784at 18.038 kb on + strand, within MPMX19_02784at 18.038 kb on + strand, within MPMX19_02784at 18.038 kb on + strand, within MPMX19_02784at 18.039 kb on - strand, within MPMX19_02784at 18.039 kb on - strand, within MPMX19_02784at 18.039 kb on - strand, within MPMX19_02784at 18.039 kb on - strand, within MPMX19_02784at 18.039 kb on - strand, within MPMX19_02784at 18.039 kb on - strand, within MPMX19_02784at 18.039 kb on - strand, within MPMX19_02784at 18.068 kb on + strandat 18.069 kb on - strandat 18.069 kb on - strandat 18.696 kb on - strand, within MPMX19_02786at 18.749 kb on + strand, within MPMX19_02786at 18.749 kb on + strand, within MPMX19_02786at 18.750 kb on - strand, within MPMX19_02786at 18.903 kb on + strand, within MPMX19_02786at 18.903 kb on + strand, within MPMX19_02786at 18.903 kb on + strand, within MPMX19_02786at 18.903 kb on + strand, within MPMX19_02786at 18.903 kb on + strand, within MPMX19_02786at 18.903 kb on + strand, within MPMX19_02786at 18.903 kb on + strand, within MPMX19_02786at 18.903 kb on + strand, within MPMX19_02786at 18.903 kb on + strand, within MPMX19_02786at 18.904 kb on - strand, within MPMX19_02786at 18.904 kb on - strand, within MPMX19_02786at 18.904 kb on - strand, within MPMX19_02786at 18.904 kb on - strand, within MPMX19_02786at 18.904 kb on - strand, within MPMX19_02786at 18.904 kb on - strand, within MPMX19_02786at 18.904 kb on - strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.905 kb on + strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.906 kb on - strand, within MPMX19_02786at 18.921 kb on - strand, within MPMX19_02786at 18.986 kb on + strand, within MPMX19_02786at 18.986 kb on + strand, within MPMX19_02786at 18.986 kb on + strand, within MPMX19_02786at 18.986 kb on + strand, within MPMX19_02786at 18.987 kb on - strand, within MPMX19_02786at 19.014 kb on - strand, within MPMX19_02786at 19.223 kb on + strand, within MPMX19_02786at 19.223 kb on + strand, within MPMX19_02786at 19.223 kb on + strand, within MPMX19_02786at 19.223 kb on + strand, within MPMX19_02786at 19.223 kb on + strand, within MPMX19_02786at 19.223 kb on + strand, within MPMX19_02786at 19.223 kb on + strand, within MPMX19_02786at 19.223 kb on + strand, within MPMX19_02786at 19.223 kb on + strand, within MPMX19_02786at 19.223 kb on + strand, within MPMX19_02786at 19.223 kb on + strand, within MPMX19_02786at 19.223 kb on + strand, within MPMX19_02786at 19.224 kb on - strand, within MPMX19_02786at 19.224 kb on - strand, within MPMX19_02786at 19.224 kb on - strand, within MPMX19_02786at 19.224 kb on - strand, within MPMX19_02786at 19.224 kb on - strand, within MPMX19_02786at 19.224 kb on - strand, within MPMX19_02786at 19.224 kb on - strand, within MPMX19_02786

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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17,266 + MPMX19_02783 0.87 +0.5
17,266 + MPMX19_02783 0.87 +0.5
17,266 + MPMX19_02783 0.87 -0.5
17,266 + MPMX19_02783 0.87 +0.1
17,266 + MPMX19_02783 0.87 -1.5
17,267 - MPMX19_02783 0.87 +0.2
17,267 - MPMX19_02783 0.87 -2.4
17,267 - MPMX19_02783 0.87 +0.2
17,267 - MPMX19_02783 0.87 +0.3
17,267 - MPMX19_02783 0.87 -0.0
17,267 - MPMX19_02783 0.87 +1.1
17,267 - MPMX19_02783 0.87 -0.5
17,274 - MPMX19_02783 0.87 +0.9
17,274 - MPMX19_02783 0.87 -0.5
17,312 + -1.1
17,312 + -0.1
17,385 + -0.1
17,389 + -0.2
17,389 + -0.7
17,390 - -1.1
17,390 - -0.1
17,390 - -2.1
17,390 - +0.8
17,561 + MPMX19_02784 0.22 -0.1
17,775 - MPMX19_02784 0.52 -0.7
17,775 - MPMX19_02784 0.52 -1.7
17,775 - MPMX19_02784 0.52 -0.8
17,775 - MPMX19_02784 0.52 -1.1
17,775 - MPMX19_02784 0.52 -0.1
17,775 - MPMX19_02784 0.52 +0.9
17,780 + MPMX19_02784 0.53 -2.0
17,780 + MPMX19_02784 0.53 +0.5
17,780 + MPMX19_02784 0.53 -2.0
17,780 + MPMX19_02784 0.53 -0.3
17,780 + MPMX19_02784 0.53 -1.1
17,780 + MPMX19_02784 0.53 +0.2
17,780 + MPMX19_02784 0.53 -2.3
17,780 + MPMX19_02784 0.53 +0.2
17,780 + MPMX19_02784 0.53 -2.4
17,780 + MPMX19_02784 0.53 -0.1
17,780 + MPMX19_02784 0.53 -0.8
17,780 + MPMX19_02784 0.53 -1.7
17,780 + MPMX19_02784 0.53 -0.2
17,781 - MPMX19_02784 0.53 +0.5
17,781 - MPMX19_02784 0.53 -0.9
17,781 - MPMX19_02784 0.53 -0.1
17,781 - MPMX19_02784 0.53 -1.3
17,781 - MPMX19_02784 0.53 -1.1
17,781 - MPMX19_02784 0.53 -1.3
17,781 - MPMX19_02784 0.53 -1.7
17,781 - MPMX19_02784 0.53 -2.1
17,781 - MPMX19_02784 0.53 -0.3
18,038 + MPMX19_02784 0.89 -0.8
18,038 + MPMX19_02784 0.89 +0.9
18,038 + MPMX19_02784 0.89 +0.5
18,038 + MPMX19_02784 0.89 -1.3
18,038 + MPMX19_02784 0.89 -1.1
18,038 + MPMX19_02784 0.89 -1.4
18,038 + MPMX19_02784 0.89 -0.8
18,039 - MPMX19_02784 0.89 -1.8
18,039 - MPMX19_02784 0.89 -1.9
18,039 - MPMX19_02784 0.89 +0.1
18,039 - MPMX19_02784 0.89 -1.1
18,039 - MPMX19_02784 0.89 -1.5
18,039 - MPMX19_02784 0.89 -1.8
18,039 - MPMX19_02784 0.89 -0.8
18,068 + +1.2
18,069 - +0.7
18,069 - -1.4
18,696 - MPMX19_02786 0.16 -1.5
18,749 + MPMX19_02786 0.21 -1.8
18,749 + MPMX19_02786 0.21 -1.8
18,750 - MPMX19_02786 0.21 -0.5
18,903 + MPMX19_02786 0.36 +0.1
18,903 + MPMX19_02786 0.36 -0.7
18,903 + MPMX19_02786 0.36 -0.7
18,903 + MPMX19_02786 0.36 -0.1
18,903 + MPMX19_02786 0.36 -0.1
18,903 + MPMX19_02786 0.36 -1.7
18,903 + MPMX19_02786 0.36 -1.3
18,903 + MPMX19_02786 0.36 -2.9
18,903 + MPMX19_02786 0.36 -0.3
18,904 - MPMX19_02786 0.36 -1.7
18,904 - MPMX19_02786 0.36 +0.8
18,904 - MPMX19_02786 0.36 +1.1
18,904 - MPMX19_02786 0.36 -0.3
18,904 - MPMX19_02786 0.36 +0.5
18,904 - MPMX19_02786 0.36 -1.1
18,904 - MPMX19_02786 0.36 +0.5
18,905 + MPMX19_02786 0.36 +0.5
18,905 + MPMX19_02786 0.36 -0.8
18,905 + MPMX19_02786 0.36 -2.3
18,905 + MPMX19_02786 0.36 -0.3
18,905 + MPMX19_02786 0.36 -0.5
18,905 + MPMX19_02786 0.36 -0.8
18,905 + MPMX19_02786 0.36 -1.7
18,905 + MPMX19_02786 0.36 -0.9
18,905 + MPMX19_02786 0.36 -1.1
18,905 + MPMX19_02786 0.36 -2.1
18,905 + MPMX19_02786 0.36 -0.8
18,905 + MPMX19_02786 0.36 -2.0
18,905 + MPMX19_02786 0.36 -0.4
18,905 + MPMX19_02786 0.36 -1.3
18,905 + MPMX19_02786 0.36 -0.8
18,905 + MPMX19_02786 0.36 -0.5
18,905 + MPMX19_02786 0.36 -0.5
18,905 + MPMX19_02786 0.36 +0.4
18,905 + MPMX19_02786 0.36 -1.3
18,905 + MPMX19_02786 0.36 -2.0
18,905 + MPMX19_02786 0.36 -0.8
18,905 + MPMX19_02786 0.36 +0.5
18,906 - MPMX19_02786 0.36 +0.5
18,906 - MPMX19_02786 0.36 -0.6
18,906 - MPMX19_02786 0.36 +0.2
18,906 - MPMX19_02786 0.36 -1.8
18,906 - MPMX19_02786 0.36 -1.1
18,906 - MPMX19_02786 0.36 +0.3
18,906 - MPMX19_02786 0.36 -1.7
18,906 - MPMX19_02786 0.36 -0.9
18,906 - MPMX19_02786 0.36 -1.1
18,906 - MPMX19_02786 0.36 -0.6
18,906 - MPMX19_02786 0.36 -0.5
18,906 - MPMX19_02786 0.36 -1.5
18,906 - MPMX19_02786 0.36 -0.8
18,906 - MPMX19_02786 0.36 +0.5
18,906 - MPMX19_02786 0.36 +1.1
18,906 - MPMX19_02786 0.36 -0.6
18,906 - MPMX19_02786 0.36 -0.1
18,906 - MPMX19_02786 0.36 -1.0
18,906 - MPMX19_02786 0.36 -0.9
18,906 - MPMX19_02786 0.36 -0.6
18,906 - MPMX19_02786 0.36 -0.7
18,906 - MPMX19_02786 0.36 -0.5
18,906 - MPMX19_02786 0.36 -0.7
18,906 - MPMX19_02786 0.36 -0.6
18,906 - MPMX19_02786 0.36 -1.1
18,906 - MPMX19_02786 0.36 -0.5
18,906 - MPMX19_02786 0.36 -0.5
18,906 - MPMX19_02786 0.36 -1.5
18,921 - MPMX19_02786 0.37 +1.5
18,986 + MPMX19_02786 0.44 +0.5
18,986 + MPMX19_02786 0.44 -0.5
18,986 + MPMX19_02786 0.44 +0.8
18,986 + MPMX19_02786 0.44 -1.1
18,987 - MPMX19_02786 0.44 -1.0
19,014 - MPMX19_02786 0.46 -0.1
19,223 + MPMX19_02786 0.66 +1.1
19,223 + MPMX19_02786 0.66 -1.3
19,223 + MPMX19_02786 0.66 -0.1
19,223 + MPMX19_02786 0.66 -1.2
19,223 + MPMX19_02786 0.66 -0.1
19,223 + MPMX19_02786 0.66 -0.3
19,223 + MPMX19_02786 0.66 -1.1
19,223 + MPMX19_02786 0.66 +0.2
19,223 + MPMX19_02786 0.66 +0.5
19,223 + MPMX19_02786 0.66 -1.1
19,223 + MPMX19_02786 0.66 +0.2
19,223 + MPMX19_02786 0.66 +0.5
19,224 - MPMX19_02786 0.66 -0.8
19,224 - MPMX19_02786 0.66 -0.5
19,224 - MPMX19_02786 0.66 +0.9
19,224 - MPMX19_02786 0.66 +0.3
19,224 - MPMX19_02786 0.66 -0.1
19,224 - MPMX19_02786 0.66 -2.0
19,224 - MPMX19_02786 0.66 -0.5

Or see this region's nucleotide sequence