Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02480 and MPMX19_02481 are separated by 22 nucleotides MPMX19_02481 and MPMX19_02482 are separated by 27 nucleotides
MPMX19_02480: MPMX19_02480 - Carboxylesterase A, at 2,600,492 to 2,601,985
_02480
MPMX19_02481: MPMX19_02481 - hypothetical protein, at 2,602,008 to 2,602,262
_02481
MPMX19_02482: MPMX19_02482 - Competence protein ComM, at 2,602,290 to 2,603,822
_02482
Position (kb)
2602
2603 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2601.119 kb on + strand, within MPMX19_02480 at 2601.119 kb on + strand, within MPMX19_02480 at 2601.119 kb on + strand, within MPMX19_02480 at 2601.119 kb on + strand, within MPMX19_02480 at 2601.119 kb on + strand, within MPMX19_02480 at 2601.119 kb on + strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.194 kb on + strand, within MPMX19_02480 at 2601.194 kb on + strand, within MPMX19_02480 at 2601.194 kb on + strand, within MPMX19_02480 at 2601.194 kb on + strand, within MPMX19_02480 at 2601.194 kb on + strand, within MPMX19_02480 at 2601.195 kb on - strand, within MPMX19_02480 at 2601.195 kb on - strand, within MPMX19_02480 at 2601.248 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.504 kb on - strand, within MPMX19_02480 at 2601.504 kb on - strand, within MPMX19_02480 at 2601.504 kb on - strand, within MPMX19_02480 at 2601.641 kb on + strand, within MPMX19_02480 at 2601.641 kb on + strand, within MPMX19_02480 at 2601.641 kb on + strand, within MPMX19_02480 at 2601.641 kb on + strand, within MPMX19_02480 at 2601.642 kb on - strand, within MPMX19_02480 at 2601.642 kb on - strand, within MPMX19_02480 at 2601.642 kb on - strand, within MPMX19_02480 at 2601.650 kb on + strand, within MPMX19_02480 at 2601.651 kb on - strand, within MPMX19_02480 at 2601.651 kb on - strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.777 kb on - strand, within MPMX19_02480 at 2601.983 kb on + strand at 2601.983 kb on + strand at 2601.984 kb on - strand at 2601.984 kb on - strand at 2602.307 kb on + strand at 2602.307 kb on + strand at 2602.315 kb on + strand at 2602.316 kb on - strand at 2602.316 kb on - strand at 2602.316 kb on - strand at 2602.406 kb on - strand at 2602.406 kb on - strand at 2602.406 kb on - strand at 2602.406 kb on - strand at 2602.540 kb on + strand, within MPMX19_02482 at 2602.558 kb on + strand, within MPMX19_02482 at 2602.558 kb on + strand, within MPMX19_02482 at 2602.558 kb on + strand, within MPMX19_02482 at 2602.717 kb on + strand, within MPMX19_02482 at 2602.717 kb on + strand, within MPMX19_02482 at 2602.718 kb on - strand, within MPMX19_02482 at 2602.822 kb on + strand, within MPMX19_02482 at 2602.822 kb on + strand, within MPMX19_02482 at 2602.822 kb on + strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2603.026 kb on + strand, within MPMX19_02482 at 2603.026 kb on + strand, within MPMX19_02482 at 2603.026 kb on + strand, within MPMX19_02482 at 2603.027 kb on - strand, within MPMX19_02482 at 2603.027 kb on - strand, within MPMX19_02482
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 2,601,119 + MPMX19_02480 0.42 -0.8 2,601,119 + MPMX19_02480 0.42 -1.4 2,601,119 + MPMX19_02480 0.42 -0.6 2,601,119 + MPMX19_02480 0.42 -1.1 2,601,119 + MPMX19_02480 0.42 -1.2 2,601,119 + MPMX19_02480 0.42 -1.3 2,601,120 - MPMX19_02480 0.42 -2.0 2,601,120 - MPMX19_02480 0.42 +0.2 2,601,120 - MPMX19_02480 0.42 -1.6 2,601,120 - MPMX19_02480 0.42 +0.2 2,601,120 - MPMX19_02480 0.42 -0.4 2,601,120 - MPMX19_02480 0.42 -0.4 2,601,120 - MPMX19_02480 0.42 -0.4 2,601,194 + MPMX19_02480 0.47 -1.8 2,601,194 + MPMX19_02480 0.47 -1.3 2,601,194 + MPMX19_02480 0.47 -1.2 2,601,194 + MPMX19_02480 0.47 -1.4 2,601,194 + MPMX19_02480 0.47 -0.5 2,601,195 - MPMX19_02480 0.47 -0.6 2,601,195 - MPMX19_02480 0.47 -1.8 2,601,248 + MPMX19_02480 0.51 +0.9 2,601,503 + MPMX19_02480 0.68 -1.4 2,601,503 + MPMX19_02480 0.68 +0.2 2,601,503 + MPMX19_02480 0.68 +1.2 2,601,503 + MPMX19_02480 0.68 -1.5 2,601,503 + MPMX19_02480 0.68 -0.8 2,601,503 + MPMX19_02480 0.68 -0.4 2,601,503 + MPMX19_02480 0.68 -1.7 2,601,503 + MPMX19_02480 0.68 -1.6 2,601,504 - MPMX19_02480 0.68 -1.2 2,601,504 - MPMX19_02480 0.68 +0.5 2,601,504 - MPMX19_02480 0.68 -0.6 2,601,641 + MPMX19_02480 0.77 -2.4 2,601,641 + MPMX19_02480 0.77 +2.2 2,601,641 + MPMX19_02480 0.77 +0.1 2,601,641 + MPMX19_02480 0.77 -2.5 2,601,642 - MPMX19_02480 0.77 -0.8 2,601,642 - MPMX19_02480 0.77 -1.2 2,601,642 - MPMX19_02480 0.77 -1.6 2,601,650 + MPMX19_02480 0.78 -0.8 2,601,651 - MPMX19_02480 0.78 -1.2 2,601,651 - MPMX19_02480 0.78 +0.4 2,601,776 + MPMX19_02480 0.86 -0.5 2,601,776 + MPMX19_02480 0.86 -2.7 2,601,776 + MPMX19_02480 0.86 -0.8 2,601,776 + MPMX19_02480 0.86 +0.8 2,601,776 + MPMX19_02480 0.86 +1.4 2,601,776 + MPMX19_02480 0.86 -1.4 2,601,776 + MPMX19_02480 0.86 -1.4 2,601,777 - MPMX19_02480 0.86 -1.2 2,601,983 + -0.4 2,601,983 + +0.8 2,601,984 - +0.2 2,601,984 - -1.4 2,602,307 + +0.2 2,602,307 + -0.8 2,602,315 + -1.2 2,602,316 - -0.8 2,602,316 - +0.2 2,602,316 - -0.8 2,602,406 - -0.2 2,602,406 - +1.2 2,602,406 - -0.2 2,602,406 - -0.8 2,602,540 + MPMX19_02482 0.16 +0.2 2,602,558 + MPMX19_02482 0.17 -0.4 2,602,558 + MPMX19_02482 0.17 -0.8 2,602,558 + MPMX19_02482 0.17 -0.8 2,602,717 + MPMX19_02482 0.28 -0.4 2,602,717 + MPMX19_02482 0.28 -0.1 2,602,718 - MPMX19_02482 0.28 +1.6 2,602,822 + MPMX19_02482 0.35 -1.4 2,602,822 + MPMX19_02482 0.35 +0.6 2,602,822 + MPMX19_02482 0.35 -1.8 2,602,823 - MPMX19_02482 0.35 +1.2 2,602,823 - MPMX19_02482 0.35 -1.3 2,602,823 - MPMX19_02482 0.35 -0.8 2,602,823 - MPMX19_02482 0.35 +0.2 2,602,823 - MPMX19_02482 0.35 -1.3 2,602,823 - MPMX19_02482 0.35 -1.2 2,602,823 - MPMX19_02482 0.35 +1.5 2,602,823 - MPMX19_02482 0.35 -0.6 2,602,823 - MPMX19_02482 0.35 +0.8 2,602,823 - MPMX19_02482 0.35 -0.1 2,602,823 - MPMX19_02482 0.35 -0.6 2,603,026 + MPMX19_02482 0.48 -0.2 2,603,026 + MPMX19_02482 0.48 +0.8 2,603,026 + MPMX19_02482 0.48 -2.3 2,603,027 - MPMX19_02482 0.48 -0.4 2,603,027 - MPMX19_02482 0.48 -0.6
Or see this region's nucleotide sequence