Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02481

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02480 and MPMX19_02481 are separated by 22 nucleotidesMPMX19_02481 and MPMX19_02482 are separated by 27 nucleotides MPMX19_02480: MPMX19_02480 - Carboxylesterase A, at 2,600,492 to 2,601,985 _02480 MPMX19_02481: MPMX19_02481 - hypothetical protein, at 2,602,008 to 2,602,262 _02481 MPMX19_02482: MPMX19_02482 - Competence protein ComM, at 2,602,290 to 2,603,822 _02482 Position (kb) 2602 2603Strain fitness (log2 ratio) -2 -1 0 1 2at 2601.119 kb on + strand, within MPMX19_02480at 2601.119 kb on + strand, within MPMX19_02480at 2601.119 kb on + strand, within MPMX19_02480at 2601.119 kb on + strand, within MPMX19_02480at 2601.119 kb on + strand, within MPMX19_02480at 2601.119 kb on + strand, within MPMX19_02480at 2601.120 kb on - strand, within MPMX19_02480at 2601.120 kb on - strand, within MPMX19_02480at 2601.120 kb on - strand, within MPMX19_02480at 2601.120 kb on - strand, within MPMX19_02480at 2601.120 kb on - strand, within MPMX19_02480at 2601.120 kb on - strand, within MPMX19_02480at 2601.120 kb on - strand, within MPMX19_02480at 2601.194 kb on + strand, within MPMX19_02480at 2601.194 kb on + strand, within MPMX19_02480at 2601.194 kb on + strand, within MPMX19_02480at 2601.194 kb on + strand, within MPMX19_02480at 2601.194 kb on + strand, within MPMX19_02480at 2601.195 kb on - strand, within MPMX19_02480at 2601.195 kb on - strand, within MPMX19_02480at 2601.248 kb on + strand, within MPMX19_02480at 2601.503 kb on + strand, within MPMX19_02480at 2601.503 kb on + strand, within MPMX19_02480at 2601.503 kb on + strand, within MPMX19_02480at 2601.503 kb on + strand, within MPMX19_02480at 2601.503 kb on + strand, within MPMX19_02480at 2601.503 kb on + strand, within MPMX19_02480at 2601.503 kb on + strand, within MPMX19_02480at 2601.503 kb on + strand, within MPMX19_02480at 2601.504 kb on - strand, within MPMX19_02480at 2601.504 kb on - strand, within MPMX19_02480at 2601.504 kb on - strand, within MPMX19_02480at 2601.641 kb on + strand, within MPMX19_02480at 2601.641 kb on + strand, within MPMX19_02480at 2601.641 kb on + strand, within MPMX19_02480at 2601.641 kb on + strand, within MPMX19_02480at 2601.642 kb on - strand, within MPMX19_02480at 2601.642 kb on - strand, within MPMX19_02480at 2601.642 kb on - strand, within MPMX19_02480at 2601.650 kb on + strand, within MPMX19_02480at 2601.651 kb on - strand, within MPMX19_02480at 2601.651 kb on - strand, within MPMX19_02480at 2601.776 kb on + strand, within MPMX19_02480at 2601.776 kb on + strand, within MPMX19_02480at 2601.776 kb on + strand, within MPMX19_02480at 2601.776 kb on + strand, within MPMX19_02480at 2601.776 kb on + strand, within MPMX19_02480at 2601.776 kb on + strand, within MPMX19_02480at 2601.776 kb on + strand, within MPMX19_02480at 2601.777 kb on - strand, within MPMX19_02480at 2601.983 kb on + strandat 2601.983 kb on + strandat 2601.984 kb on - strandat 2601.984 kb on - strandat 2602.307 kb on + strandat 2602.307 kb on + strandat 2602.315 kb on + strandat 2602.316 kb on - strandat 2602.316 kb on - strandat 2602.316 kb on - strandat 2602.406 kb on - strandat 2602.406 kb on - strandat 2602.406 kb on - strandat 2602.406 kb on - strandat 2602.540 kb on + strand, within MPMX19_02482at 2602.558 kb on + strand, within MPMX19_02482at 2602.558 kb on + strand, within MPMX19_02482at 2602.558 kb on + strand, within MPMX19_02482at 2602.717 kb on + strand, within MPMX19_02482at 2602.717 kb on + strand, within MPMX19_02482at 2602.718 kb on - strand, within MPMX19_02482at 2602.822 kb on + strand, within MPMX19_02482at 2602.822 kb on + strand, within MPMX19_02482at 2602.822 kb on + strand, within MPMX19_02482at 2602.823 kb on - strand, within MPMX19_02482at 2602.823 kb on - strand, within MPMX19_02482at 2602.823 kb on - strand, within MPMX19_02482at 2602.823 kb on - strand, within MPMX19_02482at 2602.823 kb on - strand, within MPMX19_02482at 2602.823 kb on - strand, within MPMX19_02482at 2602.823 kb on - strand, within MPMX19_02482at 2602.823 kb on - strand, within MPMX19_02482at 2602.823 kb on - strand, within MPMX19_02482at 2602.823 kb on - strand, within MPMX19_02482at 2602.823 kb on - strand, within MPMX19_02482at 2603.026 kb on + strand, within MPMX19_02482at 2603.026 kb on + strand, within MPMX19_02482at 2603.026 kb on + strand, within MPMX19_02482at 2603.027 kb on - strand, within MPMX19_02482at 2603.027 kb on - strand, within MPMX19_02482

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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2,601,119 + MPMX19_02480 0.42 -0.8
2,601,119 + MPMX19_02480 0.42 -1.4
2,601,119 + MPMX19_02480 0.42 -0.6
2,601,119 + MPMX19_02480 0.42 -1.1
2,601,119 + MPMX19_02480 0.42 -1.2
2,601,119 + MPMX19_02480 0.42 -1.3
2,601,120 - MPMX19_02480 0.42 -2.0
2,601,120 - MPMX19_02480 0.42 +0.2
2,601,120 - MPMX19_02480 0.42 -1.6
2,601,120 - MPMX19_02480 0.42 +0.2
2,601,120 - MPMX19_02480 0.42 -0.4
2,601,120 - MPMX19_02480 0.42 -0.4
2,601,120 - MPMX19_02480 0.42 -0.4
2,601,194 + MPMX19_02480 0.47 -1.8
2,601,194 + MPMX19_02480 0.47 -1.3
2,601,194 + MPMX19_02480 0.47 -1.2
2,601,194 + MPMX19_02480 0.47 -1.4
2,601,194 + MPMX19_02480 0.47 -0.5
2,601,195 - MPMX19_02480 0.47 -0.6
2,601,195 - MPMX19_02480 0.47 -1.8
2,601,248 + MPMX19_02480 0.51 +0.9
2,601,503 + MPMX19_02480 0.68 -1.4
2,601,503 + MPMX19_02480 0.68 +0.2
2,601,503 + MPMX19_02480 0.68 +1.2
2,601,503 + MPMX19_02480 0.68 -1.5
2,601,503 + MPMX19_02480 0.68 -0.8
2,601,503 + MPMX19_02480 0.68 -0.4
2,601,503 + MPMX19_02480 0.68 -1.7
2,601,503 + MPMX19_02480 0.68 -1.6
2,601,504 - MPMX19_02480 0.68 -1.2
2,601,504 - MPMX19_02480 0.68 +0.5
2,601,504 - MPMX19_02480 0.68 -0.6
2,601,641 + MPMX19_02480 0.77 -2.4
2,601,641 + MPMX19_02480 0.77 +2.2
2,601,641 + MPMX19_02480 0.77 +0.1
2,601,641 + MPMX19_02480 0.77 -2.5
2,601,642 - MPMX19_02480 0.77 -0.8
2,601,642 - MPMX19_02480 0.77 -1.2
2,601,642 - MPMX19_02480 0.77 -1.6
2,601,650 + MPMX19_02480 0.78 -0.8
2,601,651 - MPMX19_02480 0.78 -1.2
2,601,651 - MPMX19_02480 0.78 +0.4
2,601,776 + MPMX19_02480 0.86 -0.5
2,601,776 + MPMX19_02480 0.86 -2.7
2,601,776 + MPMX19_02480 0.86 -0.8
2,601,776 + MPMX19_02480 0.86 +0.8
2,601,776 + MPMX19_02480 0.86 +1.4
2,601,776 + MPMX19_02480 0.86 -1.4
2,601,776 + MPMX19_02480 0.86 -1.4
2,601,777 - MPMX19_02480 0.86 -1.2
2,601,983 + -0.4
2,601,983 + +0.8
2,601,984 - +0.2
2,601,984 - -1.4
2,602,307 + +0.2
2,602,307 + -0.8
2,602,315 + -1.2
2,602,316 - -0.8
2,602,316 - +0.2
2,602,316 - -0.8
2,602,406 - -0.2
2,602,406 - +1.2
2,602,406 - -0.2
2,602,406 - -0.8
2,602,540 + MPMX19_02482 0.16 +0.2
2,602,558 + MPMX19_02482 0.17 -0.4
2,602,558 + MPMX19_02482 0.17 -0.8
2,602,558 + MPMX19_02482 0.17 -0.8
2,602,717 + MPMX19_02482 0.28 -0.4
2,602,717 + MPMX19_02482 0.28 -0.1
2,602,718 - MPMX19_02482 0.28 +1.6
2,602,822 + MPMX19_02482 0.35 -1.4
2,602,822 + MPMX19_02482 0.35 +0.6
2,602,822 + MPMX19_02482 0.35 -1.8
2,602,823 - MPMX19_02482 0.35 +1.2
2,602,823 - MPMX19_02482 0.35 -1.3
2,602,823 - MPMX19_02482 0.35 -0.8
2,602,823 - MPMX19_02482 0.35 +0.2
2,602,823 - MPMX19_02482 0.35 -1.3
2,602,823 - MPMX19_02482 0.35 -1.2
2,602,823 - MPMX19_02482 0.35 +1.5
2,602,823 - MPMX19_02482 0.35 -0.6
2,602,823 - MPMX19_02482 0.35 +0.8
2,602,823 - MPMX19_02482 0.35 -0.1
2,602,823 - MPMX19_02482 0.35 -0.6
2,603,026 + MPMX19_02482 0.48 -0.2
2,603,026 + MPMX19_02482 0.48 +0.8
2,603,026 + MPMX19_02482 0.48 -2.3
2,603,027 - MPMX19_02482 0.48 -0.4
2,603,027 - MPMX19_02482 0.48 -0.6

Or see this region's nucleotide sequence