Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02000

Experiment: NF_with10percent_fullN

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NF_with10percent_fullN
2,087,626	+		MPMX19_01999	0.32	+1.0
2,087,627	-		MPMX19_01999	0.32	-0.6
2,087,707	+		MPMX19_01999	0.39	+0.9
2,087,708	-		MPMX19_01999	0.39	-1.8
2,087,708	-		MPMX19_01999	0.39	-0.9
2,087,708	-		MPMX19_01999	0.39	-1.1
2,087,776	+		MPMX19_01999	0.44	+0.4
2,087,777	-		MPMX19_01999	0.44	-0.1
2,087,777	-		MPMX19_01999	0.44	-1.8
2,087,777	-		MPMX19_01999	0.44	-1.4
2,087,777	-		MPMX19_01999	0.44	-0.9
2,088,031	+		MPMX19_01999	0.63	+0.7
2,088,031	+		MPMX19_01999	0.63	+0.4
2,088,031	+		MPMX19_01999	0.63	+0.9
2,088,031	+		MPMX19_01999	0.63	+1.9
2,088,032	-		MPMX19_01999	0.63	-0.6
2,088,032	-		MPMX19_01999	0.63	+0.4
2,088,032	-		MPMX19_01999	0.63	+0.4
2,088,032	-		MPMX19_01999	0.63	-0.4
2,088,032	-		MPMX19_01999	0.63	-0.1
2,088,032	-		MPMX19_01999	0.63	-0.1
2,088,043	+		MPMX19_01999	0.64	-0.6
2,088,044	-		MPMX19_01999	0.64	-1.4
2,088,064	+		MPMX19_01999	0.66	-1.1
2,088,064	+		MPMX19_01999	0.66	-2.0
2,088,064	+		MPMX19_01999	0.66	-0.2
2,088,065	-		MPMX19_01999	0.66	-1.5
2,088,065	-		MPMX19_01999	0.66	-0.1
2,088,065	-		MPMX19_01999	0.66	-1.1
2,088,065	-		MPMX19_01999	0.66	-1.7
2,088,337	+		MPMX19_01999	0.87	+0.4
2,088,337	+		MPMX19_01999	0.87	-2.1
2,088,338	-		MPMX19_01999	0.87	-0.9
2,088,370	+		MPMX19_01999	0.89	+0.6
2,088,370	+		MPMX19_01999	0.89	-3.1
2,088,370	+		MPMX19_01999	0.89	-1.1
2,088,370	+		MPMX19_01999	0.89	+2.2
2,088,371	-		MPMX19_01999	0.89	+0.6
2,088,371	-		MPMX19_01999	0.89	+1.3
2,088,371	-		MPMX19_01999	0.89	+0.4
2,088,371	-		MPMX19_01999	0.89	-1.1
2,088,371	-		MPMX19_01999	0.89	-0.6
2,088,371	-		MPMX19_01999	0.89	-0.9
2,088,371	-		MPMX19_01999	0.89	-1.7
2,088,612	+				-0.6
2,088,612	+				-0.1
2,088,612	+				-1.7
2,088,612	+				-0.0
2,088,612	+				-1.5
2,088,612	+				-1.3
2,088,612	+				+0.4
2,088,612	+				-1.7
2,088,612	+				+0.6
2,088,612	+				-1.1
2,088,612	+				-1.7
2,088,612	+				-1.1
2,088,612	+				-0.3
2,088,612	+				-1.6
2,088,612	+				-0.7
2,088,612	+				-0.7
2,088,612	+				-2.9
2,088,612	+				-1.4
2,088,612	+				+0.6
2,088,613	-				-2.0
2,088,613	-				-1.4
2,088,613	-				+0.1
2,088,613	-				-0.6
2,088,613	-				+1.2
2,088,613	-				-1.4
2,088,613	-				-0.9
2,088,613	-				-0.1
2,088,613	-				-1.1
2,088,613	-				+0.9
2,088,613	-				-0.4
2,088,613	-				-0.9
2,088,613	-				-1.1
2,088,777	+		MPMX19_02000	0.17	-1.1
2,088,777	+		MPMX19_02000	0.17	-0.6
2,088,777	+		MPMX19_02000	0.17	-2.0
2,088,777	+		MPMX19_02000	0.17	-1.4
2,088,777	+		MPMX19_02000	0.17	-1.6
2,088,777	+		MPMX19_02000	0.17	-1.9
2,088,777	+		MPMX19_02000	0.17	+0.4
2,088,777	+		MPMX19_02000	0.17	-1.6
2,088,777	+		MPMX19_02000	0.17	-1.9
2,088,777	+		MPMX19_02000	0.17	-1.1
2,088,777	+		MPMX19_02000	0.17	-1.7
2,088,777	+		MPMX19_02000	0.17	+0.4
2,088,778	-		MPMX19_02000	0.18	-1.1
2,088,778	-		MPMX19_02000	0.18	-0.6
2,088,778	-		MPMX19_02000	0.18	-0.6
2,088,778	-		MPMX19_02000	0.18	-1.4
2,088,778	-		MPMX19_02000	0.18	-2.5
2,088,778	-		MPMX19_02000	0.18	-0.9
2,088,778	-		MPMX19_02000	0.18	+0.4
2,088,778	-		MPMX19_02000	0.18	-1.7
2,089,149	+		MPMX19_02000	0.54	-0.6
2,089,149	+		MPMX19_02000	0.54	-0.9
2,089,149	+		MPMX19_02000	0.54	-2.1
2,089,149	+		MPMX19_02000	0.54	-0.6
2,089,149	+		MPMX19_02000	0.54	-1.3
2,089,149	+		MPMX19_02000	0.54	+0.4
2,089,150	-		MPMX19_02000	0.54	-1.4
2,089,150	-		MPMX19_02000	0.54	-2.1
2,089,150	-		MPMX19_02000	0.54	-0.6
2,089,150	-		MPMX19_02000	0.54	-1.1
2,089,150	-		MPMX19_02000	0.54	-0.7
2,089,150	-		MPMX19_02000	0.54	-2.5
2,089,150	-		MPMX19_02000	0.54	-1.0
2,089,479	+		MPMX19_02000	0.86	-1.1
2,089,479	+		MPMX19_02000	0.86	-0.7
2,089,479	+		MPMX19_02000	0.86	-1.7
2,089,479	+		MPMX19_02000	0.86	-1.9
2,089,480	-		MPMX19_02000	0.86	-1.9
2,089,480	-		MPMX19_02000	0.86	-0.6
2,089,480	-		MPMX19_02000	0.86	-1.6
2,089,480	-		MPMX19_02000	0.86	+1.7
2,089,480	-		MPMX19_02000	0.86	-0.1
2,089,480	-		MPMX19_02000	0.86	-2.4
2,089,480	-		MPMX19_02000	0.86	-0.4
2,089,480	-		MPMX19_02000	0.86	+1.2
2,089,480	-		MPMX19_02000	0.86	-0.8
2,089,609	+				-1.0
2,089,609	+				-0.9
2,089,609	+				-1.8
2,089,609	+				-0.1
2,089,609	+				+1.0
2,089,610	-				-0.6
2,089,610	-				-2.1
2,089,610	-				-2.0
2,089,610	-				-0.2
2,089,610	-				-0.9
2,089,610	-				-2.0
2,089,611	+				-1.7
2,089,611	+				-1.1
2,089,611	+				-2.3
2,089,611	+				-0.1
2,089,611	+				-1.4
2,089,611	+				-1.3
2,089,611	+				-0.9
2,089,611	+				-0.9
2,089,612	-				-2.1
2,089,612	-				-1.9
2,089,612	-				-0.3
2,089,612	-				-1.4
2,089,612	-				-0.9
2,089,612	-				-0.4
2,089,612	-				-1.6
2,089,612	-				+1.0
2,089,612	-				-1.1
2,089,612	-				-1.7
2,089,677	-				-0.1
2,089,677	-				-0.9
2,089,683	+				-0.4
2,089,683	+				-2.1
2,089,683	+				-1.7
2,089,683	+				-3.9
2,089,684	-				-0.6
2,089,684	-				+0.6
2,089,843	-				-0.6
2,089,843	-				-0.4
2,089,843	-				-0.9
2,090,002	+		MPMX19_02001	0.11	-0.9
2,090,002	+		MPMX19_02001	0.11	-1.1
2,090,002	+		MPMX19_02001	0.11	-0.6
2,090,002	+		MPMX19_02001	0.11	-0.2
2,090,002	+		MPMX19_02001	0.11	+0.2
2,090,003	-		MPMX19_02001	0.11	-1.0
2,090,003	-		MPMX19_02001	0.11	-3.3
2,090,003	-		MPMX19_02001	0.11	-0.4
2,090,003	-		MPMX19_02001	0.11	+0.0
2,090,003	-		MPMX19_02001	0.11	-1.9
2,090,003	-		MPMX19_02001	0.11	+0.1
2,090,017	+		MPMX19_02001	0.12	+0.4
2,090,017	+		MPMX19_02001	0.12	+0.4
2,090,017	+		MPMX19_02001	0.12	+0.5
2,090,017	+		MPMX19_02001	0.12	+1.4
2,090,018	-		MPMX19_02001	0.12	-0.9
2,090,018	-		MPMX19_02001	0.12	-1.1
2,090,018	-		MPMX19_02001	0.12	-1.9
2,090,018	-		MPMX19_02001	0.12	-0.7
2,090,317	+		MPMX19_02001	0.31	-1.3
2,090,317	+		MPMX19_02001	0.31	-0.9
2,090,317	+		MPMX19_02001	0.31	-0.1
2,090,317	+		MPMX19_02001	0.31	+0.4
2,090,317	+		MPMX19_02001	0.31	-0.1
2,090,317	+		MPMX19_02001	0.31	+0.6
2,090,317	+		MPMX19_02001	0.31	-1.1
2,090,317	+		MPMX19_02001	0.31	-0.1
2,090,317	+		MPMX19_02001	0.31	+0.1
2,090,318	-		MPMX19_02001	0.31	-0.7
2,090,318	-		MPMX19_02001	0.31	-0.9
2,090,318	-		MPMX19_02001	0.31	+0.0
2,090,318	-		MPMX19_02001	0.31	+1.4
2,090,318	-		MPMX19_02001	0.31	-2.1
2,090,318	-		MPMX19_02001	0.31	-0.5
2,090,318	-		MPMX19_02001	0.31	-0.8
2,090,318	-		MPMX19_02001	0.31	-1.6
2,090,318	-		MPMX19_02001	0.31	-0.4
2,090,318	-		MPMX19_02001	0.31	-0.6
2,090,318	-		MPMX19_02001	0.31	-2.0
2,090,338	+		MPMX19_02001	0.32	-0.9
2,090,338	+		MPMX19_02001	0.32	-0.6
2,090,338	+		MPMX19_02001	0.32	-1.3
2,090,339	-		MPMX19_02001	0.32	-1.6
2,090,339	-		MPMX19_02001	0.32	-0.1
2,090,339	-		MPMX19_02001	0.32	-0.1
2,090,339	-		MPMX19_02001	0.32	-0.4
2,090,339	-		MPMX19_02001	0.32	-0.6
2,090,339	-		MPMX19_02001	0.32	-0.9
2,090,512	+		MPMX19_02001	0.43	-0.0
2,090,513	-		MPMX19_02001	0.43	+1.4
2,090,513	-		MPMX19_02001	0.43	-1.0