Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01921

Experiment: NF_with10percent_fullN

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NF_with10percent_fullN
2,003,819	+		MPMX19_01920	0.35	+0.5
2,003,819	+		MPMX19_01920	0.35	+0.5
2,003,819	+		MPMX19_01920	0.35	-0.1
2,003,819	+		MPMX19_01920	0.35	+1.2
2,003,819	+		MPMX19_01920	0.35	+0.5
2,003,819	+		MPMX19_01920	0.35	-1.4
2,003,819	+		MPMX19_01920	0.35	+0.3
2,003,819	+		MPMX19_01920	0.35	-0.1
2,003,819	+		MPMX19_01920	0.35	-1.4
2,003,819	+		MPMX19_01920	0.35	-1.5
2,003,819	+		MPMX19_01920	0.35	-0.1
2,003,819	+		MPMX19_01920	0.35	-0.5
2,003,819	+		MPMX19_01920	0.35	-1.0
2,003,819	+		MPMX19_01920	0.35	-0.1
2,003,819	+		MPMX19_01920	0.35	-0.1
2,003,820	-		MPMX19_01920	0.36	-0.4
2,003,820	-		MPMX19_01920	0.36	-2.1
2,003,820	-		MPMX19_01920	0.36	+0.5
2,003,820	-		MPMX19_01920	0.36	-1.4
2,003,820	-		MPMX19_01920	0.36	-1.1
2,003,820	-		MPMX19_01920	0.36	-0.9
2,003,820	-		MPMX19_01920	0.36	-0.4
2,003,820	-		MPMX19_01920	0.36	+0.5
2,003,820	-		MPMX19_01920	0.36	-0.1
2,003,820	-		MPMX19_01920	0.36	+0.5
2,003,820	-		MPMX19_01920	0.36	+2.0
2,003,915	+		MPMX19_01920	0.46	+1.5
2,003,915	+		MPMX19_01920	0.46	-0.9
2,003,915	+		MPMX19_01920	0.46	-1.4
2,003,915	+		MPMX19_01920	0.46	-2.7
2,003,915	+		MPMX19_01920	0.46	+0.5
2,003,915	+		MPMX19_01920	0.46	-0.9
2,003,915	+		MPMX19_01920	0.46	-1.1
2,003,916	-		MPMX19_01920	0.46	-1.2
2,003,916	-		MPMX19_01920	0.46	-1.7
2,003,916	-		MPMX19_01920	0.46	-0.7
2,003,916	-		MPMX19_01920	0.46	-1.8
2,003,916	-		MPMX19_01920	0.46	+1.5
2,003,916	-		MPMX19_01920	0.46	-0.1
2,003,916	-		MPMX19_01920	0.46	-0.9
2,003,916	-		MPMX19_01920	0.46	+0.5
2,003,916	-		MPMX19_01920	0.46	+0.7
2,003,916	-		MPMX19_01920	0.46	-0.9
2,004,068	+		MPMX19_01920	0.62	-0.5
2,004,068	+		MPMX19_01920	0.62	-0.3
2,004,068	+		MPMX19_01920	0.62	-0.1
2,004,068	+		MPMX19_01920	0.62	+0.5
2,004,069	-		MPMX19_01920	0.62	-1.9
2,004,069	-		MPMX19_01920	0.62	-0.1
2,004,069	-		MPMX19_01920	0.62	-0.4
2,004,069	-		MPMX19_01920	0.62	+0.9
2,004,069	-		MPMX19_01920	0.62	+1.0
2,004,069	-		MPMX19_01920	0.62	-0.1
2,004,069	-		MPMX19_01920	0.62	+0.5
2,004,069	-		MPMX19_01920	0.62	-0.3
2,004,069	-		MPMX19_01920	0.62	-1.5
2,004,069	-		MPMX19_01920	0.62	-2.2
2,004,069	-		MPMX19_01920	0.62	+1.5
2,004,069	-		MPMX19_01920	0.62	+0.9
2,004,161	+		MPMX19_01920	0.72	-0.2
2,004,161	+		MPMX19_01920	0.72	-0.4
2,004,161	+		MPMX19_01920	0.72	-0.4
2,004,161	+		MPMX19_01920	0.72	+0.9
2,004,161	+		MPMX19_01920	0.72	-1.7
2,004,161	+		MPMX19_01920	0.72	-1.4
2,004,161	+		MPMX19_01920	0.72	-0.8
2,004,162	-		MPMX19_01920	0.72	-1.1
2,004,162	-		MPMX19_01920	0.72	-0.5
2,004,162	-		MPMX19_01920	0.72	-1.1
2,004,162	-		MPMX19_01920	0.72	-0.9
2,004,353	+				+0.2
2,004,353	+				-0.1
2,004,353	+				-0.2
2,004,353	+				+1.0
2,004,353	+				-0.3
2,004,353	+				-0.9
2,004,353	+				+0.5
2,004,353	+				-0.1
2,004,353	+				-0.9
2,004,353	+				+1.7
2,004,353	+				-0.9
2,004,353	+				-0.1
2,004,354	-				-2.4
2,004,354	-				-1.7
2,004,354	-				+1.5
2,004,354	-				+1.5
2,004,354	-				-0.1
2,004,354	-				-0.5
2,004,354	-				-0.4
2,004,354	-				-1.4
2,004,354	-				-1.1
2,004,371	+				-0.6
2,004,371	+				-1.2
2,004,371	+				-2.1
2,004,371	+				-1.1
2,004,371	+				-0.9
2,004,371	+				+0.2
2,004,371	+				+1.5
2,004,371	+				-1.9
2,004,371	+				-1.1
2,004,371	+				+1.0
2,004,371	+				-1.1
2,004,371	+				-0.7
2,004,371	+				-1.4
2,004,371	+				+1.5
2,004,371	+				+0.5
2,004,371	+				-1.1
2,004,371	+				-0.1
2,004,371	+				-0.3
2,004,371	+				-0.4
2,004,371	+				+0.9
2,004,371	+				-0.9
2,004,371	+				+0.9
2,004,371	+				+0.5
2,004,371	+				-1.0
2,004,371	+				-0.4
2,004,371	+				-0.3
2,004,372	-				-1.4
2,004,372	-				-2.0
2,004,372	-				-1.5
2,004,372	-				-2.4
2,004,372	-				-0.5
2,004,372	-				-1.9
2,004,372	-				+0.5
2,004,372	-				+0.6
2,004,372	-				-1.1
2,004,372	-				-1.1
2,004,372	-				+1.5
2,004,372	-				-0.5
2,004,372	-				-0.5
2,004,372	-				-0.7
2,004,372	-				-0.7
2,004,372	-				-1.7
2,004,435	-				-1.1
2,004,435	-				+0.1
2,004,580	+				-0.1
2,004,581	-				-1.8
2,004,581	-				+0.6
2,004,591	+				-0.9
2,004,591	+				-1.5
2,004,591	+				-0.1
2,004,591	+				-1.4
2,004,591	+				-0.9
2,004,591	+				-2.0
2,004,591	+				-0.1
2,004,591	+				-1.5
2,004,591	+				-1.7
2,004,591	+				-0.1
2,004,591	+				+1.0
2,004,591	+				+0.2
2,004,592	-				-1.0
2,004,592	-				-0.9
2,004,592	-				-0.6
2,004,763	+		MPMX19_01921	0.12	-0.5
2,004,763	+		MPMX19_01921	0.12	-1.5
2,004,763	+		MPMX19_01921	0.12	-1.1
2,004,763	+		MPMX19_01921	0.12	-2.0
2,004,763	+		MPMX19_01921	0.12	-0.5
2,004,764	-		MPMX19_01921	0.12	-1.5
2,004,764	-		MPMX19_01921	0.12	-1.1
2,004,764	-		MPMX19_01921	0.12	-0.9
2,004,764	-		MPMX19_01921	0.12	-2.1
2,004,764	-		MPMX19_01921	0.12	-1.4
2,005,004	+		MPMX19_01921	0.36	+1.0
2,005,004	+		MPMX19_01921	0.36	+0.5
2,005,004	+		MPMX19_01921	0.36	-0.3
2,005,004	+		MPMX19_01921	0.36	-0.5
2,005,004	+		MPMX19_01921	0.36	-1.1
2,005,004	+		MPMX19_01921	0.36	-0.8
2,005,004	+		MPMX19_01921	0.36	+1.5
2,005,004	+		MPMX19_01921	0.36	-2.3
2,005,005	-		MPMX19_01921	0.36	-2.2
2,005,005	-		MPMX19_01921	0.36	-0.1
2,005,005	-		MPMX19_01921	0.36	-0.1
2,005,005	-		MPMX19_01921	0.36	+1.0
2,005,005	-		MPMX19_01921	0.36	-1.4
2,005,005	-		MPMX19_01921	0.36	+0.2
2,005,090	+		MPMX19_01921	0.45	-1.0
2,005,090	+		MPMX19_01921	0.45	+1.0
2,005,090	+		MPMX19_01921	0.45	-1.1
2,005,090	+		MPMX19_01921	0.45	-2.5
2,005,090	+		MPMX19_01921	0.45	+0.5
2,005,090	+		MPMX19_01921	0.45	+0.0
2,005,090	+		MPMX19_01921	0.45	+0.9
2,005,091	-		MPMX19_01921	0.45	+0.2
2,005,091	-		MPMX19_01921	0.45	-0.5
2,005,091	-		MPMX19_01921	0.45	-0.1
2,005,091	-		MPMX19_01921	0.45	-0.5
2,005,091	-		MPMX19_01921	0.45	-0.4
2,005,091	-		MPMX19_01921	0.45	-0.7
2,005,099	+		MPMX19_01921	0.46	-1.4
2,005,099	+		MPMX19_01921	0.46	-0.2
2,005,099	+		MPMX19_01921	0.46	-0.4
2,005,099	+		MPMX19_01921	0.46	-0.1
2,005,099	+		MPMX19_01921	0.46	-0.9
2,005,099	+		MPMX19_01921	0.46	-1.5
2,005,099	+		MPMX19_01921	0.46	-1.1
2,005,099	+		MPMX19_01921	0.46	-2.4
2,005,099	+		MPMX19_01921	0.46	+0.9
2,005,099	+		MPMX19_01921	0.46	-0.9
2,005,100	-		MPMX19_01921	0.46	+0.1
2,005,100	-		MPMX19_01921	0.46	-0.5
2,005,100	-		MPMX19_01921	0.46	-1.7
2,005,100	-		MPMX19_01921	0.46	-0.9
2,005,100	-		MPMX19_01921	0.46	-0.7
2,005,100	-		MPMX19_01921	0.46	+0.0
2,005,100	-		MPMX19_01921	0.46	-1.6
2,005,100	-		MPMX19_01921	0.46	-0.9
2,005,100	-		MPMX19_01921	0.46	-0.9
2,005,100	-		MPMX19_01921	0.46	-1.5
2,005,100	-		MPMX19_01921	0.46	-1.7
2,005,100	-		MPMX19_01921	0.46	+1.1
2,005,100	-		MPMX19_01921	0.46	-0.1
2,005,321	+		MPMX19_01921	0.68	-0.4
2,005,321	+		MPMX19_01921	0.68	-1.5
2,005,321	+		MPMX19_01921	0.68	-0.5
2,005,321	+		MPMX19_01921	0.68	-0.7
2,005,321	+		MPMX19_01921	0.68	+0.6
2,005,321	+		MPMX19_01921	0.68	-0.1
2,005,321	+		MPMX19_01921	0.68	-0.8
2,005,321	+		MPMX19_01921	0.68	-0.3
2,005,321	+		MPMX19_01921	0.68	-0.9
2,005,321	+		MPMX19_01921	0.68	-0.1
2,005,321	+		MPMX19_01921	0.68	-1.4
2,005,321	+		MPMX19_01921	0.68	-0.1
2,005,321	+		MPMX19_01921	0.68	-0.5
2,005,322	-		MPMX19_01921	0.68	-2.9
2,005,322	-		MPMX19_01921	0.68	+0.2
2,005,322	-		MPMX19_01921	0.68	-1.8
2,005,322	-		MPMX19_01921	0.68	-1.1
2,005,322	-		MPMX19_01921	0.68	-0.5
2,005,322	-		MPMX19_01921	0.68	+0.3
2,005,322	-		MPMX19_01921	0.68	+0.9
2,005,322	-		MPMX19_01921	0.68	-1.9
2,005,322	-		MPMX19_01921	0.68	-0.3
2,005,322	-		MPMX19_01921	0.68	-0.4
2,005,322	-		MPMX19_01921	0.68	-0.5
2,005,322	-		MPMX19_01921	0.68	-1.1
2,005,477	+		MPMX19_01921	0.83	-0.5
2,005,477	+		MPMX19_01921	0.83	-0.1
2,005,477	+		MPMX19_01921	0.83	+0.5
2,005,477	+		MPMX19_01921	0.83	-0.9
2,005,477	+		MPMX19_01921	0.83	-0.5
2,005,477	+		MPMX19_01921	0.83	-1.4
2,005,477	+		MPMX19_01921	0.83	-0.1
2,005,477	+		MPMX19_01921	0.83	-0.5
2,005,477	+		MPMX19_01921	0.83	+1.2
2,005,477	+		MPMX19_01921	0.83	-0.9
2,005,477	+		MPMX19_01921	0.83	+0.5
2,005,477	+		MPMX19_01921	0.83	-1.4
2,005,478	-		MPMX19_01921	0.83	-0.5
2,005,478	-		MPMX19_01921	0.83	+0.0
2,005,478	-		MPMX19_01921	0.83	-0.7
2,005,478	-		MPMX19_01921	0.83	+2.8
2,005,478	-		MPMX19_01921	0.83	+0.5
2,005,478	-		MPMX19_01921	0.83	-0.4
2,005,478	-		MPMX19_01921	0.83	+0.3
2,005,478	-		MPMX19_01921	0.83	-0.5
2,005,478	-		MPMX19_01921	0.83	+1.0
2,005,478	-		MPMX19_01921	0.83	-1.6
2,005,478	-		MPMX19_01921	0.83	-1.1
2,005,478	-		MPMX19_01921	0.83	-1.0
2,005,478	-		MPMX19_01921	0.83	-0.9
2,005,478	-		MPMX19_01921	0.83	+0.5
2,005,647	+				-0.0
2,005,647	+				-0.9
2,005,648	-				+1.5
2,005,648	-				-2.7
2,005,653	+				-0.2
2,005,653	+				-0.5
2,005,653	+				-0.1
2,005,653	+				-1.9
2,005,653	+				-1.5
2,005,653	+				-0.9
2,005,653	+				+0.5
2,005,653	+				-0.1
2,005,654	-				+0.5
2,005,654	-				+0.5
2,005,654	-				+0.6
2,005,654	-				-2.1
2,005,654	-				-1.5
2,005,654	-				+0.5
2,005,654	-				-0.5
2,005,654	-				-1.5
2,005,655	+				+1.9
2,005,655	+				-0.9
2,005,655	+				-0.2
2,005,655	+				-1.0
2,005,655	+				-1.1
2,005,656	-				-1.4
2,005,656	-				+0.5
2,005,656	-				+0.7
2,005,670	+				-0.9
2,005,785	-				+1.5
2,006,180	+		MPMX19_01922	0.37	+0.9
2,006,180	+		MPMX19_01922	0.37	-0.1
2,006,180	+		MPMX19_01922	0.37	-0.5
2,006,180	+		MPMX19_01922	0.37	-0.3
2,006,181	-		MPMX19_01922	0.37	+1.0
2,006,181	-		MPMX19_01922	0.37	-1.1
2,006,181	-		MPMX19_01922	0.37	-1.5
2,006,181	-		MPMX19_01922	0.37	-0.5
2,006,181	-		MPMX19_01922	0.37	-1.4
2,006,181	-		MPMX19_01922	0.37	-0.9
2,006,181	-		MPMX19_01922	0.37	-0.4
2,006,181	-		MPMX19_01922	0.37	-0.1
2,006,354	+		MPMX19_01922	0.52	-0.0
2,006,354	+		MPMX19_01922	0.52	+0.0
2,006,354	+		MPMX19_01922	0.52	-0.5
2,006,354	+		MPMX19_01922	0.52	-1.1
2,006,354	+		MPMX19_01922	0.52	-0.1
2,006,354	+		MPMX19_01922	0.52	-0.9
2,006,354	+		MPMX19_01922	0.52	-1.2
2,006,354	+		MPMX19_01922	0.52	+0.5
2,006,354	+		MPMX19_01922	0.52	+0.6
2,006,354	+		MPMX19_01922	0.52	-0.1
2,006,354	+		MPMX19_01922	0.52	-0.9
2,006,354	+		MPMX19_01922	0.52	-0.7
2,006,354	+		MPMX19_01922	0.52	+0.5
2,006,354	+		MPMX19_01922	0.52	-0.1
2,006,354	+		MPMX19_01922	0.52	-2.2
2,006,354	+		MPMX19_01922	0.52	-0.9
2,006,355	-		MPMX19_01922	0.52	-1.2
2,006,355	-		MPMX19_01922	0.52	-0.3
2,006,355	-		MPMX19_01922	0.52	-0.9
2,006,355	-		MPMX19_01922	0.52	+0.5
2,006,355	-		MPMX19_01922	0.52	+0.6
2,006,355	-		MPMX19_01922	0.52	+1.1
2,006,355	-		MPMX19_01922	0.52	-2.0
2,006,355	-		MPMX19_01922	0.52	-1.1
2,006,355	-		MPMX19_01922	0.52	-0.1
2,006,355	-		MPMX19_01922	0.52	-1.1
2,006,355	-		MPMX19_01922	0.52	-0.5
2,006,355	-		MPMX19_01922	0.52	-0.4
2,006,355	-		MPMX19_01922	0.52	+2.2
2,006,355	-		MPMX19_01922	0.52	-0.7
2,006,355	-		MPMX19_01922	0.52	-0.5
2,006,355	-		MPMX19_01922	0.52	+1.5
2,006,355	-		MPMX19_01922	0.52	-0.5
2,006,355	-		MPMX19_01922	0.52	+1.5
2,006,355	-		MPMX19_01922	0.52	-1.2
2,006,355	-		MPMX19_01922	0.52	-0.4
2,006,378	+		MPMX19_01922	0.54	-0.9
2,006,378	+		MPMX19_01922	0.54	+1.5
2,006,378	+		MPMX19_01922	0.54	-2.1
2,006,378	+		MPMX19_01922	0.54	-0.1
2,006,378	+		MPMX19_01922	0.54	-1.1
2,006,378	+		MPMX19_01922	0.54	+3.0
2,006,379	-		MPMX19_01922	0.54	-1.1
2,006,379	-		MPMX19_01922	0.54	-1.1
2,006,379	-		MPMX19_01922	0.54	-1.1
2,006,379	-		MPMX19_01922	0.54	+1.0
2,006,379	-		MPMX19_01922	0.54	+0.5
2,006,379	-		MPMX19_01922	0.54	+0.1
2,006,496	+		MPMX19_01922	0.64	-1.4
2,006,496	+		MPMX19_01922	0.64	-0.5
2,006,497	-		MPMX19_01922	0.65	+0.1