Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01716

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01714 and MPMX19_01715 are separated by 94 nucleotidesMPMX19_01715 and MPMX19_01716 are separated by 42 nucleotidesMPMX19_01716 and MPMX19_01717 are separated by 3 nucleotidesMPMX19_01717 and MPMX19_01718 overlap by 4 nucleotides MPMX19_01714: MPMX19_01714 - tRNA-modifying protein YgfZ, at 1,807,646 to 1,808,560 _01714 MPMX19_01715: MPMX19_01715 - hypothetical protein, at 1,808,655 to 1,809,206 _01715 MPMX19_01716: MPMX19_01716 - hypothetical protein, at 1,809,249 to 1,809,944 _01716 MPMX19_01717: MPMX19_01717 - Pyrophosphatase PpaX, at 1,809,948 to 1,810,652 _01717 MPMX19_01718: MPMX19_01718 - Ribosomal large subunit pseudouridine synthase C, at 1,810,649 to 1,811,716 _01718 Position (kb) 1809 1810Strain fitness (log2 ratio) -2 -1 0 1 2at 1808.279 kb on + strand, within MPMX19_01714at 1808.279 kb on + strand, within MPMX19_01714at 1808.279 kb on + strand, within MPMX19_01714at 1808.279 kb on + strand, within MPMX19_01714at 1808.280 kb on - strand, within MPMX19_01714at 1808.280 kb on - strand, within MPMX19_01714at 1808.281 kb on + strand, within MPMX19_01714at 1808.282 kb on - strand, within MPMX19_01714at 1808.545 kb on + strandat 1808.545 kb on + strandat 1808.545 kb on + strandat 1808.546 kb on - strandat 1808.558 kb on + strandat 1808.883 kb on + strand, within MPMX19_01715at 1808.883 kb on + strand, within MPMX19_01715at 1808.883 kb on + strand, within MPMX19_01715at 1808.883 kb on + strand, within MPMX19_01715at 1808.883 kb on + strand, within MPMX19_01715at 1808.883 kb on + strand, within MPMX19_01715at 1808.883 kb on + strand, within MPMX19_01715at 1808.883 kb on + strand, within MPMX19_01715at 1808.884 kb on - strand, within MPMX19_01715at 1808.884 kb on - strand, within MPMX19_01715at 1808.884 kb on - strand, within MPMX19_01715at 1808.884 kb on - strand, within MPMX19_01715at 1808.884 kb on - strand, within MPMX19_01715at 1808.884 kb on - strand, within MPMX19_01715at 1808.884 kb on - strand, within MPMX19_01715at 1808.884 kb on - strand, within MPMX19_01715at 1808.884 kb on - strand, within MPMX19_01715at 1808.884 kb on - strand, within MPMX19_01715at 1808.884 kb on - strand, within MPMX19_01715at 1808.884 kb on - strand, within MPMX19_01715at 1808.884 kb on - strand, within MPMX19_01715at 1808.884 kb on - strand, within MPMX19_01715at 1808.884 kb on - strand, within MPMX19_01715at 1809.012 kb on + strand, within MPMX19_01715at 1809.012 kb on + strand, within MPMX19_01715at 1809.012 kb on + strand, within MPMX19_01715at 1809.012 kb on + strand, within MPMX19_01715at 1809.012 kb on + strand, within MPMX19_01715at 1809.012 kb on + strand, within MPMX19_01715at 1809.013 kb on - strand, within MPMX19_01715at 1809.013 kb on - strand, within MPMX19_01715at 1809.102 kb on + strand, within MPMX19_01715at 1809.102 kb on + strand, within MPMX19_01715at 1809.102 kb on + strand, within MPMX19_01715at 1809.103 kb on - strand, within MPMX19_01715at 1809.103 kb on - strand, within MPMX19_01715at 1809.103 kb on - strand, within MPMX19_01715at 1809.103 kb on - strand, within MPMX19_01715at 1809.103 kb on - strand, within MPMX19_01715at 1809.103 kb on - strand, within MPMX19_01715at 1809.103 kb on - strand, within MPMX19_01715at 1809.103 kb on - strand, within MPMX19_01715at 1809.103 kb on - strand, within MPMX19_01715at 1809.103 kb on - strand, within MPMX19_01715at 1809.103 kb on - strand, within MPMX19_01715at 1809.204 kb on + strandat 1809.204 kb on + strandat 1809.204 kb on + strandat 1809.204 kb on + strandat 1809.204 kb on + strandat 1809.204 kb on + strandat 1809.204 kb on + strandat 1809.204 kb on + strandat 1809.204 kb on + strandat 1809.204 kb on + strandat 1809.204 kb on + strandat 1809.204 kb on + strandat 1809.204 kb on + strandat 1809.204 kb on + strandat 1809.205 kb on - strandat 1809.205 kb on - strandat 1809.205 kb on - strandat 1809.205 kb on - strandat 1809.205 kb on - strandat 1809.205 kb on - strandat 1809.205 kb on - strandat 1809.205 kb on - strandat 1809.205 kb on - strandat 1809.205 kb on - strandat 1809.205 kb on - strandat 1809.205 kb on - strandat 1809.205 kb on - strandat 1809.205 kb on - strandat 1810.103 kb on - strand, within MPMX19_01717at 1810.117 kb on - strand, within MPMX19_01717at 1810.117 kb on - strand, within MPMX19_01717at 1810.399 kb on + strand, within MPMX19_01717at 1810.399 kb on + strand, within MPMX19_01717at 1810.400 kb on - strand, within MPMX19_01717at 1810.400 kb on - strand, within MPMX19_01717at 1810.400 kb on - strand, within MPMX19_01717at 1810.400 kb on - strand, within MPMX19_01717at 1810.400 kb on - strand, within MPMX19_01717at 1810.400 kb on - strand, within MPMX19_01717at 1810.400 kb on - strand, within MPMX19_01717at 1810.400 kb on - strand, within MPMX19_01717at 1810.400 kb on - strand, within MPMX19_01717at 1810.400 kb on - strand, within MPMX19_01717at 1810.400 kb on - strand, within MPMX19_01717at 1810.400 kb on - strand, within MPMX19_01717at 1810.400 kb on - strand, within MPMX19_01717at 1810.400 kb on - strand, within MPMX19_01717at 1810.400 kb on - strand, within MPMX19_01717at 1810.400 kb on - strand, within MPMX19_01717at 1810.702 kb on - strandat 1810.854 kb on + strand, within MPMX19_01718at 1810.855 kb on - strand, within MPMX19_01718at 1810.855 kb on - strand, within MPMX19_01718

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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1,808,279 + MPMX19_01714 0.69 -0.1
1,808,279 + MPMX19_01714 0.69 +1.5
1,808,279 + MPMX19_01714 0.69 -1.3
1,808,279 + MPMX19_01714 0.69 -0.5
1,808,280 - MPMX19_01714 0.69 +0.2
1,808,280 - MPMX19_01714 0.69 -0.8
1,808,281 + MPMX19_01714 0.69 +1.1
1,808,282 - MPMX19_01714 0.70 -1.1
1,808,545 + -1.2
1,808,545 + +0.5
1,808,545 + +0.9
1,808,546 - +1.1
1,808,558 + -1.1
1,808,883 + MPMX19_01715 0.41 +0.9
1,808,883 + MPMX19_01715 0.41 -0.5
1,808,883 + MPMX19_01715 0.41 +2.5
1,808,883 + MPMX19_01715 0.41 +0.5
1,808,883 + MPMX19_01715 0.41 -0.8
1,808,883 + MPMX19_01715 0.41 +1.5
1,808,883 + MPMX19_01715 0.41 -0.5
1,808,883 + MPMX19_01715 0.41 +1.1
1,808,884 - MPMX19_01715 0.41 +0.7
1,808,884 - MPMX19_01715 0.41 -0.1
1,808,884 - MPMX19_01715 0.41 -2.5
1,808,884 - MPMX19_01715 0.41 -1.7
1,808,884 - MPMX19_01715 0.41 -2.3
1,808,884 - MPMX19_01715 0.41 -0.5
1,808,884 - MPMX19_01715 0.41 +0.5
1,808,884 - MPMX19_01715 0.41 -0.7
1,808,884 - MPMX19_01715 0.41 -1.9
1,808,884 - MPMX19_01715 0.41 -0.2
1,808,884 - MPMX19_01715 0.41 -1.5
1,808,884 - MPMX19_01715 0.41 +0.9
1,808,884 - MPMX19_01715 0.41 +0.9
1,808,884 - MPMX19_01715 0.41 -0.9
1,808,884 - MPMX19_01715 0.41 +0.5
1,809,012 + MPMX19_01715 0.65 +0.9
1,809,012 + MPMX19_01715 0.65 -0.9
1,809,012 + MPMX19_01715 0.65 +1.5
1,809,012 + MPMX19_01715 0.65 +1.5
1,809,012 + MPMX19_01715 0.65 -0.1
1,809,012 + MPMX19_01715 0.65 -0.1
1,809,013 - MPMX19_01715 0.65 -1.9
1,809,013 - MPMX19_01715 0.65 -1.1
1,809,102 + MPMX19_01715 0.81 +1.2
1,809,102 + MPMX19_01715 0.81 +0.9
1,809,102 + MPMX19_01715 0.81 +0.8
1,809,103 - MPMX19_01715 0.81 -0.9
1,809,103 - MPMX19_01715 0.81 -0.1
1,809,103 - MPMX19_01715 0.81 +0.0
1,809,103 - MPMX19_01715 0.81 +1.5
1,809,103 - MPMX19_01715 0.81 -0.9
1,809,103 - MPMX19_01715 0.81 +0.1
1,809,103 - MPMX19_01715 0.81 +0.5
1,809,103 - MPMX19_01715 0.81 +0.4
1,809,103 - MPMX19_01715 0.81 -0.1
1,809,103 - MPMX19_01715 0.81 -0.9
1,809,103 - MPMX19_01715 0.81 +0.9
1,809,204 + +0.1
1,809,204 + +0.9
1,809,204 + +1.5
1,809,204 + -0.1
1,809,204 + -0.9
1,809,204 + +0.1
1,809,204 + +0.7
1,809,204 + -0.9
1,809,204 + -1.1
1,809,204 + +1.5
1,809,204 + -0.1
1,809,204 + +0.1
1,809,204 + +0.3
1,809,204 + +1.1
1,809,205 - +0.9
1,809,205 - -1.2
1,809,205 - -0.5
1,809,205 - -1.3
1,809,205 - -0.9
1,809,205 - -0.4
1,809,205 - -0.3
1,809,205 - +1.5
1,809,205 - -0.1
1,809,205 - -0.5
1,809,205 - +0.9
1,809,205 - +1.5
1,809,205 - +1.5
1,809,205 - +0.5
1,810,103 - MPMX19_01717 0.22 +0.9
1,810,117 - MPMX19_01717 0.24 -0.1
1,810,117 - MPMX19_01717 0.24 -0.1
1,810,399 + MPMX19_01717 0.64 -1.1
1,810,399 + MPMX19_01717 0.64 -0.9
1,810,400 - MPMX19_01717 0.64 +1.5
1,810,400 - MPMX19_01717 0.64 -1.7
1,810,400 - MPMX19_01717 0.64 -2.0
1,810,400 - MPMX19_01717 0.64 +0.1
1,810,400 - MPMX19_01717 0.64 -0.9
1,810,400 - MPMX19_01717 0.64 -1.1
1,810,400 - MPMX19_01717 0.64 -0.1
1,810,400 - MPMX19_01717 0.64 -1.5
1,810,400 - MPMX19_01717 0.64 -0.1
1,810,400 - MPMX19_01717 0.64 +0.7
1,810,400 - MPMX19_01717 0.64 -1.3
1,810,400 - MPMX19_01717 0.64 -0.3
1,810,400 - MPMX19_01717 0.64 -0.3
1,810,400 - MPMX19_01717 0.64 -0.3
1,810,400 - MPMX19_01717 0.64 -0.3
1,810,400 - MPMX19_01717 0.64 -0.5
1,810,702 - -0.9
1,810,854 + MPMX19_01718 0.19 -0.1
1,810,855 - MPMX19_01718 0.19 +0.2
1,810,855 - MPMX19_01718 0.19 -0.1

Or see this region's nucleotide sequence