Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01678 and MPMX19_01679 overlap by 4 nucleotides MPMX19_01679 and MPMX19_01680 are separated by 7 nucleotides MPMX19_01680 and MPMX19_01681 overlap by 4 nucleotides MPMX19_01681 and MPMX19_01682 overlap by 4 nucleotides
MPMX19_01678: MPMX19_01678 - UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, at 1,767,049 to 1,768,290
_01678
MPMX19_01679: MPMX19_01679 - hypothetical protein, at 1,768,287 to 1,768,538
_01679
MPMX19_01680: MPMX19_01680 - UDP-N-acetylmuramate--L-alanine ligase, at 1,768,546 to 1,769,964
_01680
MPMX19_01681: MPMX19_01681 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 1,769,961 to 1,770,908
_01681
MPMX19_01682: MPMX19_01682 - D-alanine--D-alanine ligase B, at 1,770,905 to 1,771,852
_01682
Position (kb) 1768
1769
1770 Strain fitness (log2 ratio) -2
-1
0
1 at 1768.377 kb on + strand, within MPMX19_01679 at 1768.377 kb on + strand, within MPMX19_01679 at 1768.377 kb on + strand, within MPMX19_01679 at 1768.377 kb on + strand, within MPMX19_01679 at 1768.377 kb on + strand, within MPMX19_01679 at 1768.377 kb on + strand, within MPMX19_01679 at 1768.377 kb on + strand, within MPMX19_01679 at 1768.377 kb on + strand, within MPMX19_01679 at 1768.377 kb on + strand, within MPMX19_01679 at 1768.377 kb on + strand, within MPMX19_01679 at 1768.377 kb on + strand, within MPMX19_01679 at 1768.377 kb on + strand, within MPMX19_01679 at 1768.377 kb on + strand, within MPMX19_01679 at 1768.377 kb on + strand, within MPMX19_01679 at 1769.947 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 1,768,377 + MPMX19_01679 0.36 +0.3 1,768,377 + MPMX19_01679 0.36 +0.9 1,768,377 + MPMX19_01679 0.36 -0.4 1,768,377 + MPMX19_01679 0.36 -0.6 1,768,377 + MPMX19_01679 0.36 -0.9 1,768,377 + MPMX19_01679 0.36 +1.3 1,768,377 + MPMX19_01679 0.36 -0.3 1,768,377 + MPMX19_01679 0.36 +0.7 1,768,377 + MPMX19_01679 0.36 +1.0 1,768,377 + MPMX19_01679 0.36 -2.1 1,768,377 + MPMX19_01679 0.36 -1.1 1,768,377 + MPMX19_01679 0.36 +0.5 1,768,377 + MPMX19_01679 0.36 -1.1 1,768,377 + MPMX19_01679 0.36 +1.7 1,769,947 + +1.1
Or see this region's nucleotide sequence