Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01642 and MPMX19_01643 are separated by 183 nucleotides MPMX19_01643 and MPMX19_01644 overlap by 47 nucleotides MPMX19_01644 and MPMX19_01645 are separated by 121 nucleotides
MPMX19_01642: MPMX19_01642 - hypothetical protein, at 1,726,969 to 1,728,639
_01642
MPMX19_01643: MPMX19_01643 - hypothetical protein, at 1,728,823 to 1,729,734
_01643
MPMX19_01644: MPMX19_01644 - hypothetical protein, at 1,729,688 to 1,730,155
_01644
MPMX19_01645: MPMX19_01645 - HTH-type transcriptional regulator GltC, at 1,730,277 to 1,731,230
_01645
Position (kb) 1728
1729
1730 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1727.941 kb on + strand, within MPMX19_01642 at 1727.941 kb on + strand, within MPMX19_01642 at 1727.941 kb on + strand, within MPMX19_01642 at 1727.941 kb on + strand, within MPMX19_01642 at 1727.941 kb on + strand, within MPMX19_01642 at 1727.941 kb on + strand, within MPMX19_01642 at 1727.942 kb on - strand, within MPMX19_01642 at 1727.942 kb on - strand, within MPMX19_01642 at 1727.942 kb on - strand, within MPMX19_01642 at 1727.942 kb on - strand, within MPMX19_01642 at 1727.942 kb on - strand, within MPMX19_01642 at 1727.942 kb on - strand, within MPMX19_01642 at 1728.139 kb on + strand, within MPMX19_01642 at 1728.139 kb on + strand, within MPMX19_01642 at 1728.139 kb on + strand, within MPMX19_01642 at 1728.139 kb on + strand, within MPMX19_01642 at 1728.139 kb on + strand, within MPMX19_01642 at 1728.139 kb on + strand, within MPMX19_01642 at 1728.139 kb on + strand, within MPMX19_01642 at 1728.139 kb on + strand, within MPMX19_01642 at 1728.139 kb on + strand, within MPMX19_01642 at 1728.139 kb on + strand, within MPMX19_01642 at 1728.139 kb on + strand, within MPMX19_01642 at 1728.139 kb on + strand, within MPMX19_01642 at 1728.139 kb on + strand, within MPMX19_01642 at 1728.140 kb on - strand, within MPMX19_01642 at 1728.140 kb on - strand, within MPMX19_01642 at 1728.140 kb on - strand, within MPMX19_01642 at 1728.140 kb on - strand, within MPMX19_01642 at 1728.140 kb on - strand, within MPMX19_01642 at 1728.637 kb on + strand at 1728.637 kb on + strand at 1728.637 kb on + strand at 1728.637 kb on + strand at 1728.637 kb on + strand at 1728.637 kb on + strand at 1728.638 kb on - strand at 1728.638 kb on - strand at 1728.638 kb on - strand at 1728.760 kb on + strand at 1728.783 kb on + strand at 1728.783 kb on + strand at 1728.783 kb on + strand at 1728.784 kb on - strand at 1728.784 kb on - strand at 1728.784 kb on - strand at 1729.168 kb on + strand, within MPMX19_01643 at 1729.169 kb on - strand, within MPMX19_01643 at 1729.508 kb on + strand, within MPMX19_01643 at 1729.509 kb on - strand, within MPMX19_01643 at 1729.556 kb on + strand, within MPMX19_01643 at 1729.556 kb on + strand, within MPMX19_01643 at 1729.556 kb on + strand, within MPMX19_01643 at 1729.579 kb on + strand, within MPMX19_01643 at 1729.579 kb on + strand, within MPMX19_01643 at 1729.579 kb on + strand, within MPMX19_01643 at 1729.580 kb on - strand, within MPMX19_01643 at 1729.580 kb on - strand, within MPMX19_01643 at 1729.580 kb on - strand, within MPMX19_01643 at 1729.580 kb on - strand, within MPMX19_01643 at 1729.580 kb on - strand, within MPMX19_01643 at 1729.580 kb on - strand, within MPMX19_01643 at 1729.580 kb on - strand, within MPMX19_01643 at 1729.591 kb on + strand, within MPMX19_01643 at 1729.591 kb on + strand, within MPMX19_01643 at 1729.592 kb on - strand, within MPMX19_01643 at 1729.592 kb on - strand, within MPMX19_01643 at 1729.615 kb on + strand, within MPMX19_01643 at 1729.615 kb on + strand, within MPMX19_01643 at 1729.615 kb on + strand, within MPMX19_01643 at 1729.615 kb on + strand, within MPMX19_01643 at 1729.615 kb on + strand, within MPMX19_01643 at 1729.616 kb on - strand, within MPMX19_01643 at 1729.616 kb on - strand, within MPMX19_01643 at 1729.616 kb on - strand, within MPMX19_01643 at 1729.616 kb on - strand, within MPMX19_01643 at 1729.616 kb on - strand, within MPMX19_01643 at 1729.616 kb on - strand, within MPMX19_01643 at 1729.616 kb on - strand, within MPMX19_01643 at 1729.689 kb on + strand at 1729.863 kb on + strand, within MPMX19_01644 at 1729.863 kb on + strand, within MPMX19_01644 at 1729.863 kb on + strand, within MPMX19_01644 at 1729.863 kb on + strand, within MPMX19_01644 at 1729.863 kb on + strand, within MPMX19_01644 at 1729.863 kb on + strand, within MPMX19_01644 at 1729.863 kb on + strand, within MPMX19_01644 at 1729.863 kb on + strand, within MPMX19_01644 at 1729.863 kb on + strand, within MPMX19_01644 at 1729.863 kb on + strand, within MPMX19_01644 at 1729.863 kb on + strand, within MPMX19_01644 at 1729.863 kb on + strand, within MPMX19_01644 at 1729.863 kb on + strand, within MPMX19_01644 at 1729.863 kb on + strand, within MPMX19_01644 at 1729.863 kb on + strand, within MPMX19_01644 at 1729.863 kb on + strand, within MPMX19_01644 at 1729.863 kb on + strand, within MPMX19_01644 at 1729.863 kb on + strand, within MPMX19_01644 at 1729.863 kb on + strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.864 kb on - strand, within MPMX19_01644 at 1729.869 kb on + strand, within MPMX19_01644 at 1729.869 kb on + strand, within MPMX19_01644 at 1729.869 kb on + strand, within MPMX19_01644 at 1729.869 kb on + strand, within MPMX19_01644 at 1729.870 kb on - strand, within MPMX19_01644 at 1730.118 kb on + strand at 1730.119 kb on - strand at 1730.119 kb on - strand at 1730.119 kb on - strand at 1730.119 kb on - strand at 1730.167 kb on + strand at 1730.167 kb on + strand at 1730.189 kb on + strand at 1730.189 kb on + strand at 1730.189 kb on + strand at 1730.189 kb on + strand at 1730.189 kb on + strand at 1730.190 kb on - strand at 1730.190 kb on - strand at 1730.190 kb on - strand at 1730.208 kb on + strand at 1730.208 kb on + strand at 1730.208 kb on + strand at 1730.208 kb on + strand at 1730.208 kb on + strand at 1730.208 kb on + strand at 1730.208 kb on + strand at 1730.208 kb on + strand at 1730.208 kb on + strand at 1730.208 kb on + strand at 1730.209 kb on - strand at 1730.209 kb on - strand at 1730.209 kb on - strand at 1730.209 kb on - strand at 1730.209 kb on - strand at 1730.209 kb on - strand at 1730.209 kb on - strand at 1730.209 kb on - strand at 1730.209 kb on - strand at 1730.209 kb on - strand at 1730.209 kb on - strand at 1730.248 kb on + strand at 1730.248 kb on + strand at 1730.248 kb on + strand at 1730.248 kb on + strand at 1730.248 kb on + strand at 1730.248 kb on + strand at 1730.248 kb on + strand at 1730.248 kb on + strand at 1730.249 kb on - strand at 1730.249 kb on - strand at 1730.249 kb on - strand at 1730.249 kb on - strand at 1730.249 kb on - strand at 1730.249 kb on - strand at 1730.249 kb on - strand at 1730.249 kb on - strand at 1730.249 kb on - strand at 1730.249 kb on - strand at 1730.249 kb on - strand at 1730.249 kb on - strand at 1730.249 kb on - strand at 1730.249 kb on - strand at 1730.265 kb on + strand at 1730.265 kb on + strand at 1730.265 kb on + strand at 1730.266 kb on - strand at 1730.266 kb on - strand at 1730.266 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 1,727,941 + MPMX19_01642 0.58 -1.7 1,727,941 + MPMX19_01642 0.58 -0.1 1,727,941 + MPMX19_01642 0.58 -0.4 1,727,941 + MPMX19_01642 0.58 -0.9 1,727,941 + MPMX19_01642 0.58 -1.1 1,727,941 + MPMX19_01642 0.58 +0.2 1,727,942 - MPMX19_01642 0.58 +1.5 1,727,942 - MPMX19_01642 0.58 -1.2 1,727,942 - MPMX19_01642 0.58 -1.1 1,727,942 - MPMX19_01642 0.58 +1.9 1,727,942 - MPMX19_01642 0.58 +1.5 1,727,942 - MPMX19_01642 0.58 -0.9 1,728,139 + MPMX19_01642 0.70 -0.7 1,728,139 + MPMX19_01642 0.70 -1.9 1,728,139 + MPMX19_01642 0.70 +0.1 1,728,139 + MPMX19_01642 0.70 +1.7 1,728,139 + MPMX19_01642 0.70 -0.9 1,728,139 + MPMX19_01642 0.70 -0.9 1,728,139 + MPMX19_01642 0.70 +0.5 1,728,139 + MPMX19_01642 0.70 +1.5 1,728,139 + MPMX19_01642 0.70 +0.4 1,728,139 + MPMX19_01642 0.70 +0.0 1,728,139 + MPMX19_01642 0.70 -0.5 1,728,139 + MPMX19_01642 0.70 -0.5 1,728,139 + MPMX19_01642 0.70 -0.5 1,728,140 - MPMX19_01642 0.70 -1.0 1,728,140 - MPMX19_01642 0.70 -0.3 1,728,140 - MPMX19_01642 0.70 -1.0 1,728,140 - MPMX19_01642 0.70 +1.5 1,728,140 - MPMX19_01642 0.70 +1.5 1,728,637 + -0.6 1,728,637 + +0.7 1,728,637 + -1.4 1,728,637 + -1.8 1,728,637 + +0.1 1,728,637 + -0.6 1,728,638 - -1.1 1,728,638 - +0.1 1,728,638 - -1.7 1,728,760 + -2.0 1,728,783 + +0.4 1,728,783 + -1.6 1,728,783 + +0.4 1,728,784 - -0.9 1,728,784 - -0.9 1,728,784 - +0.9 1,729,168 + MPMX19_01643 0.38 -3.3 1,729,169 - MPMX19_01643 0.38 +1.2 1,729,508 + MPMX19_01643 0.75 -1.0 1,729,509 - MPMX19_01643 0.75 -2.0 1,729,556 + MPMX19_01643 0.80 -0.9 1,729,556 + MPMX19_01643 0.80 -2.0 1,729,556 + MPMX19_01643 0.80 -0.6 1,729,579 + MPMX19_01643 0.83 -1.4 1,729,579 + MPMX19_01643 0.83 -1.7 1,729,579 + MPMX19_01643 0.83 -0.4 1,729,580 - MPMX19_01643 0.83 -1.4 1,729,580 - MPMX19_01643 0.83 -1.0 1,729,580 - MPMX19_01643 0.83 -0.9 1,729,580 - MPMX19_01643 0.83 -0.4 1,729,580 - MPMX19_01643 0.83 -0.1 1,729,580 - MPMX19_01643 0.83 -1.6 1,729,580 - MPMX19_01643 0.83 -0.6 1,729,591 + MPMX19_01643 0.84 -0.9 1,729,591 + MPMX19_01643 0.84 -1.9 1,729,592 - MPMX19_01643 0.84 -1.1 1,729,592 - MPMX19_01643 0.84 -1.1 1,729,615 + MPMX19_01643 0.87 -1.1 1,729,615 + MPMX19_01643 0.87 -0.6 1,729,615 + MPMX19_01643 0.87 -0.8 1,729,615 + MPMX19_01643 0.87 +1.2 1,729,615 + MPMX19_01643 0.87 -0.9 1,729,616 - MPMX19_01643 0.87 -1.7 1,729,616 - MPMX19_01643 0.87 -2.5 1,729,616 - MPMX19_01643 0.87 +0.4 1,729,616 - MPMX19_01643 0.87 -0.1 1,729,616 - MPMX19_01643 0.87 -1.1 1,729,616 - MPMX19_01643 0.87 -0.1 1,729,616 - MPMX19_01643 0.87 -0.1 1,729,689 + -0.1 1,729,863 + MPMX19_01644 0.37 -1.7 1,729,863 + MPMX19_01644 0.37 -0.7 1,729,863 + MPMX19_01644 0.37 +1.4 1,729,863 + MPMX19_01644 0.37 -1.5 1,729,863 + MPMX19_01644 0.37 -0.4 1,729,863 + MPMX19_01644 0.37 -0.0 1,729,863 + MPMX19_01644 0.37 -0.9 1,729,863 + MPMX19_01644 0.37 +0.7 1,729,863 + MPMX19_01644 0.37 -0.1 1,729,863 + MPMX19_01644 0.37 -0.6 1,729,863 + MPMX19_01644 0.37 -0.9 1,729,863 + MPMX19_01644 0.37 -0.1 1,729,863 + MPMX19_01644 0.37 +1.2 1,729,863 + MPMX19_01644 0.37 -0.6 1,729,863 + MPMX19_01644 0.37 -0.9 1,729,863 + MPMX19_01644 0.37 -0.9 1,729,863 + MPMX19_01644 0.37 +0.4 1,729,863 + MPMX19_01644 0.37 +0.0 1,729,863 + MPMX19_01644 0.37 -0.1 1,729,864 - MPMX19_01644 0.38 -2.0 1,729,864 - MPMX19_01644 0.38 +0.2 1,729,864 - MPMX19_01644 0.38 -1.1 1,729,864 - MPMX19_01644 0.38 +0.4 1,729,864 - MPMX19_01644 0.38 -0.9 1,729,864 - MPMX19_01644 0.38 -0.9 1,729,864 - MPMX19_01644 0.38 -0.1 1,729,864 - MPMX19_01644 0.38 -0.3 1,729,864 - MPMX19_01644 0.38 -1.6 1,729,864 - MPMX19_01644 0.38 -0.7 1,729,864 - MPMX19_01644 0.38 -0.6 1,729,864 - MPMX19_01644 0.38 -1.4 1,729,864 - MPMX19_01644 0.38 +0.4 1,729,864 - MPMX19_01644 0.38 +1.4 1,729,864 - MPMX19_01644 0.38 +1.0 1,729,864 - MPMX19_01644 0.38 -0.9 1,729,864 - MPMX19_01644 0.38 +0.0 1,729,864 - MPMX19_01644 0.38 +0.4 1,729,864 - MPMX19_01644 0.38 -1.1 1,729,864 - MPMX19_01644 0.38 +0.4 1,729,864 - MPMX19_01644 0.38 -1.1 1,729,864 - MPMX19_01644 0.38 +0.4 1,729,864 - MPMX19_01644 0.38 -0.3 1,729,864 - MPMX19_01644 0.38 -1.4 1,729,864 - MPMX19_01644 0.38 -0.5 1,729,864 - MPMX19_01644 0.38 -0.7 1,729,864 - MPMX19_01644 0.38 -1.9 1,729,864 - MPMX19_01644 0.38 -1.6 1,729,864 - MPMX19_01644 0.38 -1.3 1,729,869 + MPMX19_01644 0.39 -0.6 1,729,869 + MPMX19_01644 0.39 -0.1 1,729,869 + MPMX19_01644 0.39 +0.4 1,729,869 + MPMX19_01644 0.39 -0.6 1,729,870 - MPMX19_01644 0.39 -0.7 1,730,118 + -0.9 1,730,119 - -0.4 1,730,119 - -0.9 1,730,119 - -0.9 1,730,119 - +1.2 1,730,167 + -0.4 1,730,167 + -1.9 1,730,189 + -1.1 1,730,189 + +0.7 1,730,189 + -1.6 1,730,189 + -0.6 1,730,189 + -1.4 1,730,190 - -1.1 1,730,190 - -1.7 1,730,190 - -1.1 1,730,208 + -0.1 1,730,208 + -0.7 1,730,208 + -0.4 1,730,208 + -0.6 1,730,208 + -0.1 1,730,208 + -0.6 1,730,208 + -1.1 1,730,208 + +0.2 1,730,208 + -0.4 1,730,208 + -0.1 1,730,209 - -0.6 1,730,209 - +0.4 1,730,209 - -1.4 1,730,209 - +0.1 1,730,209 - -0.7 1,730,209 - -0.1 1,730,209 - -1.5 1,730,209 - -0.7 1,730,209 - -0.9 1,730,209 - +1.0 1,730,209 - -0.4 1,730,248 + +0.6 1,730,248 + -0.1 1,730,248 + -0.4 1,730,248 + -1.9 1,730,248 + +0.1 1,730,248 + -1.1 1,730,248 + -0.9 1,730,248 + +0.6 1,730,249 - -0.6 1,730,249 - -1.1 1,730,249 - -1.9 1,730,249 - -1.7 1,730,249 - +0.7 1,730,249 - -2.9 1,730,249 - -0.1 1,730,249 - -1.4 1,730,249 - +0.6 1,730,249 - -0.6 1,730,249 - -1.8 1,730,249 - -2.6 1,730,249 - -0.1 1,730,249 - -1.1 1,730,265 + -1.4 1,730,265 + +0.1 1,730,265 + -0.1 1,730,266 - -0.9 1,730,266 - +0.1 1,730,266 - -0.9
Or see this region's nucleotide sequence