Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01141

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01140 and MPMX19_01141 are separated by 48 nucleotidesMPMX19_01141 and MPMX19_01142 are separated by 20 nucleotides MPMX19_01140: MPMX19_01140 - hypothetical protein, at 1,174,228 to 1,176,951 _01140 MPMX19_01141: MPMX19_01141 - hypothetical protein, at 1,177,000 to 1,177,929 _01141 MPMX19_01142: MPMX19_01142 - hypothetical protein, at 1,177,950 to 1,178,975 _01142 Position (kb) 1176 1177 1178Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1176.840 kb on + strandat 1176.880 kb on + strandat 1176.880 kb on + strandat 1176.880 kb on + strandat 1176.880 kb on + strandat 1176.880 kb on + strandat 1176.880 kb on + strandat 1176.880 kb on + strandat 1176.880 kb on + strandat 1176.880 kb on + strandat 1176.880 kb on + strandat 1176.880 kb on + strandat 1176.881 kb on - strandat 1176.881 kb on - strandat 1176.881 kb on - strandat 1176.881 kb on - strandat 1176.881 kb on - strandat 1176.881 kb on - strandat 1176.881 kb on - strandat 1176.881 kb on - strandat 1176.881 kb on - strandat 1176.881 kb on - strandat 1176.881 kb on - strandat 1176.881 kb on - strandat 1176.881 kb on - strandat 1176.988 kb on + strandat 1176.988 kb on + strandat 1176.988 kb on + strandat 1177.226 kb on + strand, within MPMX19_01141at 1177.226 kb on + strand, within MPMX19_01141at 1177.226 kb on + strand, within MPMX19_01141at 1177.227 kb on - strand, within MPMX19_01141at 1177.227 kb on - strand, within MPMX19_01141at 1177.227 kb on - strand, within MPMX19_01141at 1177.227 kb on - strand, within MPMX19_01141at 1177.227 kb on - strand, within MPMX19_01141at 1177.227 kb on - strand, within MPMX19_01141at 1177.227 kb on - strand, within MPMX19_01141at 1177.658 kb on + strand, within MPMX19_01141at 1177.658 kb on + strand, within MPMX19_01141at 1177.658 kb on + strand, within MPMX19_01141at 1177.658 kb on + strand, within MPMX19_01141at 1177.658 kb on + strand, within MPMX19_01141at 1177.658 kb on + strand, within MPMX19_01141at 1177.658 kb on + strand, within MPMX19_01141at 1177.658 kb on + strand, within MPMX19_01141at 1177.658 kb on + strand, within MPMX19_01141at 1177.658 kb on + strand, within MPMX19_01141at 1177.658 kb on + strand, within MPMX19_01141at 1177.658 kb on + strand, within MPMX19_01141at 1177.659 kb on - strand, within MPMX19_01141at 1177.659 kb on - strand, within MPMX19_01141at 1177.659 kb on - strand, within MPMX19_01141at 1177.659 kb on - strand, within MPMX19_01141at 1177.659 kb on - strand, within MPMX19_01141at 1177.659 kb on - strand, within MPMX19_01141at 1177.659 kb on - strand, within MPMX19_01141at 1177.659 kb on - strand, within MPMX19_01141at 1177.659 kb on - strand, within MPMX19_01141at 1177.659 kb on - strand, within MPMX19_01141at 1178.431 kb on + strand, within MPMX19_01142at 1178.431 kb on + strand, within MPMX19_01142at 1178.431 kb on + strand, within MPMX19_01142at 1178.431 kb on + strand, within MPMX19_01142at 1178.431 kb on + strand, within MPMX19_01142at 1178.431 kb on + strand, within MPMX19_01142at 1178.431 kb on + strand, within MPMX19_01142at 1178.431 kb on + strand, within MPMX19_01142at 1178.432 kb on - strand, within MPMX19_01142at 1178.432 kb on - strand, within MPMX19_01142at 1178.432 kb on - strand, within MPMX19_01142at 1178.432 kb on - strand, within MPMX19_01142at 1178.432 kb on - strand, within MPMX19_01142at 1178.432 kb on - strand, within MPMX19_01142at 1178.497 kb on + strand, within MPMX19_01142at 1178.498 kb on - strand, within MPMX19_01142at 1178.498 kb on - strand, within MPMX19_01142at 1178.498 kb on - strand, within MPMX19_01142at 1178.498 kb on - strand, within MPMX19_01142at 1178.498 kb on - strand, within MPMX19_01142at 1178.687 kb on + strand, within MPMX19_01142at 1178.687 kb on + strand, within MPMX19_01142at 1178.687 kb on + strand, within MPMX19_01142at 1178.687 kb on + strand, within MPMX19_01142at 1178.687 kb on + strand, within MPMX19_01142at 1178.688 kb on - strand, within MPMX19_01142at 1178.688 kb on - strand, within MPMX19_01142at 1178.688 kb on - strand, within MPMX19_01142at 1178.688 kb on - strand, within MPMX19_01142at 1178.688 kb on - strand, within MPMX19_01142

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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1,176,840 + -0.9
1,176,880 + -1.2
1,176,880 + -2.3
1,176,880 + -2.5
1,176,880 + +0.2
1,176,880 + -3.1
1,176,880 + -0.6
1,176,880 + -0.2
1,176,880 + -0.6
1,176,880 + +0.8
1,176,880 + -1.9
1,176,880 + +0.4
1,176,881 - -2.0
1,176,881 - +0.4
1,176,881 - -0.6
1,176,881 - -0.6
1,176,881 - -0.6
1,176,881 - -0.2
1,176,881 - -0.9
1,176,881 - -1.9
1,176,881 - -0.9
1,176,881 - -0.6
1,176,881 - -0.2
1,176,881 - -1.7
1,176,881 - -3.2
1,176,988 + -1.6
1,176,988 + -0.6
1,176,988 + -0.2
1,177,226 + MPMX19_01141 0.24 -0.9
1,177,226 + MPMX19_01141 0.24 +0.2
1,177,226 + MPMX19_01141 0.24 -2.4
1,177,227 - MPMX19_01141 0.24 -0.6
1,177,227 - MPMX19_01141 0.24 -1.2
1,177,227 - MPMX19_01141 0.24 -1.4
1,177,227 - MPMX19_01141 0.24 -0.9
1,177,227 - MPMX19_01141 0.24 +1.1
1,177,227 - MPMX19_01141 0.24 -1.4
1,177,227 - MPMX19_01141 0.24 +0.0
1,177,658 + MPMX19_01141 0.71 -0.0
1,177,658 + MPMX19_01141 0.71 +0.4
1,177,658 + MPMX19_01141 0.71 -1.4
1,177,658 + MPMX19_01141 0.71 -0.6
1,177,658 + MPMX19_01141 0.71 -0.6
1,177,658 + MPMX19_01141 0.71 -1.4
1,177,658 + MPMX19_01141 0.71 -0.2
1,177,658 + MPMX19_01141 0.71 -0.9
1,177,658 + MPMX19_01141 0.71 -0.9
1,177,658 + MPMX19_01141 0.71 +0.4
1,177,658 + MPMX19_01141 0.71 -0.2
1,177,658 + MPMX19_01141 0.71 -1.9
1,177,659 - MPMX19_01141 0.71 -0.4
1,177,659 - MPMX19_01141 0.71 -3.9
1,177,659 - MPMX19_01141 0.71 -0.4
1,177,659 - MPMX19_01141 0.71 -0.6
1,177,659 - MPMX19_01141 0.71 +0.4
1,177,659 - MPMX19_01141 0.71 -0.4
1,177,659 - MPMX19_01141 0.71 -2.0
1,177,659 - MPMX19_01141 0.71 -2.3
1,177,659 - MPMX19_01141 0.71 -1.6
1,177,659 - MPMX19_01141 0.71 -0.2
1,178,431 + MPMX19_01142 0.47 -1.4
1,178,431 + MPMX19_01142 0.47 -0.9
1,178,431 + MPMX19_01142 0.47 -1.2
1,178,431 + MPMX19_01142 0.47 -1.2
1,178,431 + MPMX19_01142 0.47 -1.2
1,178,431 + MPMX19_01142 0.47 -0.6
1,178,431 + MPMX19_01142 0.47 +0.8
1,178,431 + MPMX19_01142 0.47 -0.6
1,178,432 - MPMX19_01142 0.47 -2.0
1,178,432 - MPMX19_01142 0.47 -1.7
1,178,432 - MPMX19_01142 0.47 -1.6
1,178,432 - MPMX19_01142 0.47 -1.6
1,178,432 - MPMX19_01142 0.47 -1.2
1,178,432 - MPMX19_01142 0.47 -2.0
1,178,497 + MPMX19_01142 0.53 -0.9
1,178,498 - MPMX19_01142 0.53 -1.2
1,178,498 - MPMX19_01142 0.53 +0.8
1,178,498 - MPMX19_01142 0.53 -0.0
1,178,498 - MPMX19_01142 0.53 -0.6
1,178,498 - MPMX19_01142 0.53 -0.2
1,178,687 + MPMX19_01142 0.72 +0.3
1,178,687 + MPMX19_01142 0.72 -0.9
1,178,687 + MPMX19_01142 0.72 -0.6
1,178,687 + MPMX19_01142 0.72 -1.2
1,178,687 + MPMX19_01142 0.72 +0.4
1,178,688 - MPMX19_01142 0.72 +0.1
1,178,688 - MPMX19_01142 0.72 -0.3
1,178,688 - MPMX19_01142 0.72 -1.9
1,178,688 - MPMX19_01142 0.72 +0.6
1,178,688 - MPMX19_01142 0.72 -0.2

Or see this region's nucleotide sequence