Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00892 and MPMX19_00893 are separated by 413 nucleotides MPMX19_00893 and MPMX19_00894 are separated by 41 nucleotides
MPMX19_00892: MPMX19_00892 - Thermostable carboxypeptidase 1, at 925,358 to 926,845
_00892
MPMX19_00893: MPMX19_00893 - Anthranilate synthase component 1, at 927,259 to 928,770
_00893
MPMX19_00894: MPMX19_00894 - Peptidyl-prolyl cis-trans isomerase D, at 928,812 to 930,692
_00894
Position (kb) 927
928
929 Strain fitness (log2 ratio) -2
-1
0
1
2 at 926.366 kb on + strand, within MPMX19_00892 at 926.366 kb on + strand, within MPMX19_00892 at 926.366 kb on + strand, within MPMX19_00892 at 926.366 kb on + strand, within MPMX19_00892 at 926.367 kb on - strand, within MPMX19_00892 at 926.367 kb on - strand, within MPMX19_00892 at 926.367 kb on - strand, within MPMX19_00892 at 926.417 kb on + strand, within MPMX19_00892 at 926.417 kb on + strand, within MPMX19_00892 at 926.418 kb on - strand, within MPMX19_00892 at 926.418 kb on - strand, within MPMX19_00892 at 926.418 kb on - strand, within MPMX19_00892 at 926.418 kb on - strand, within MPMX19_00892 at 926.418 kb on - strand, within MPMX19_00892 at 926.418 kb on - strand, within MPMX19_00892 at 926.441 kb on + strand, within MPMX19_00892 at 926.597 kb on + strand, within MPMX19_00892 at 926.597 kb on + strand, within MPMX19_00892 at 926.597 kb on + strand, within MPMX19_00892 at 926.598 kb on - strand, within MPMX19_00892 at 926.598 kb on - strand, within MPMX19_00892 at 926.598 kb on - strand, within MPMX19_00892 at 926.598 kb on - strand, within MPMX19_00892 at 926.598 kb on - strand, within MPMX19_00892 at 926.609 kb on + strand, within MPMX19_00892 at 926.609 kb on + strand, within MPMX19_00892 at 926.609 kb on + strand, within MPMX19_00892 at 926.609 kb on + strand, within MPMX19_00892 at 926.609 kb on + strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.837 kb on + strand at 926.838 kb on - strand at 926.838 kb on - strand at 926.838 kb on - strand at 926.838 kb on - strand at 926.900 kb on + strand at 926.900 kb on + strand at 926.900 kb on + strand at 926.900 kb on + strand at 926.900 kb on + strand at 927.092 kb on + strand at 927.092 kb on + strand at 927.092 kb on + strand at 927.092 kb on + strand at 927.092 kb on + strand at 927.092 kb on + strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.095 kb on + strand at 927.095 kb on + strand at 927.095 kb on + strand at 927.095 kb on + strand at 927.095 kb on + strand at 927.095 kb on + strand at 927.096 kb on - strand at 927.097 kb on + strand at 927.097 kb on + strand at 927.097 kb on + strand at 927.098 kb on - strand at 927.098 kb on - strand at 927.127 kb on + strand at 927.335 kb on + strand at 927.335 kb on + strand at 927.335 kb on + strand at 927.336 kb on - strand at 927.336 kb on - strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.458 kb on + strand, within MPMX19_00893 at 927.458 kb on + strand, within MPMX19_00893 at 927.458 kb on + strand, within MPMX19_00893 at 927.459 kb on - strand, within MPMX19_00893 at 927.459 kb on - strand, within MPMX19_00893 at 927.476 kb on + strand, within MPMX19_00893 at 927.476 kb on + strand, within MPMX19_00893 at 927.476 kb on + strand, within MPMX19_00893 at 927.477 kb on - strand, within MPMX19_00893 at 927.477 kb on - strand, within MPMX19_00893 at 927.477 kb on - strand, within MPMX19_00893 at 927.477 kb on - strand, within MPMX19_00893 at 927.644 kb on + strand, within MPMX19_00893 at 927.644 kb on + strand, within MPMX19_00893 at 927.645 kb on - strand, within MPMX19_00893 at 927.645 kb on - strand, within MPMX19_00893 at 927.645 kb on - strand, within MPMX19_00893 at 927.645 kb on - strand, within MPMX19_00893 at 927.645 kb on - strand, within MPMX19_00893 at 927.829 kb on - strand, within MPMX19_00893 at 927.829 kb on - strand, within MPMX19_00893 at 927.957 kb on - strand, within MPMX19_00893 at 927.957 kb on - strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.067 kb on + strand, within MPMX19_00893 at 928.067 kb on + strand, within MPMX19_00893 at 928.067 kb on + strand, within MPMX19_00893 at 928.067 kb on + strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.196 kb on + strand, within MPMX19_00893 at 928.197 kb on - strand, within MPMX19_00893 at 928.197 kb on - strand, within MPMX19_00893 at 928.197 kb on - strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.379 kb on + strand, within MPMX19_00893 at 928.379 kb on + strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.730 kb on + strand at 928.731 kb on - strand at 928.731 kb on - strand at 928.731 kb on - strand at 928.731 kb on - strand at 928.752 kb on + strand at 928.864 kb on + strand at 928.865 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 926,366 + MPMX19_00892 0.68 -0.9 926,366 + MPMX19_00892 0.68 +0.7 926,366 + MPMX19_00892 0.68 +0.4 926,366 + MPMX19_00892 0.68 +0.2 926,367 - MPMX19_00892 0.68 -1.2 926,367 - MPMX19_00892 0.68 -0.9 926,367 - MPMX19_00892 0.68 -1.7 926,417 + MPMX19_00892 0.71 -1.4 926,417 + MPMX19_00892 0.71 +0.4 926,418 - MPMX19_00892 0.71 -0.9 926,418 - MPMX19_00892 0.71 +0.1 926,418 - MPMX19_00892 0.71 -0.9 926,418 - MPMX19_00892 0.71 -1.6 926,418 - MPMX19_00892 0.71 -0.9 926,418 - MPMX19_00892 0.71 +0.7 926,441 + MPMX19_00892 0.73 -0.2 926,597 + MPMX19_00892 0.83 -2.2 926,597 + MPMX19_00892 0.83 -0.4 926,597 + MPMX19_00892 0.83 -0.6 926,598 - MPMX19_00892 0.83 +0.5 926,598 - MPMX19_00892 0.83 +0.4 926,598 - MPMX19_00892 0.83 -1.2 926,598 - MPMX19_00892 0.83 +0.1 926,598 - MPMX19_00892 0.83 -0.7 926,609 + MPMX19_00892 0.84 -0.9 926,609 + MPMX19_00892 0.84 -0.2 926,609 + MPMX19_00892 0.84 +0.4 926,609 + MPMX19_00892 0.84 -1.4 926,609 + MPMX19_00892 0.84 +0.8 926,610 - MPMX19_00892 0.84 -1.8 926,610 - MPMX19_00892 0.84 -1.9 926,610 - MPMX19_00892 0.84 -0.5 926,610 - MPMX19_00892 0.84 -0.3 926,610 - MPMX19_00892 0.84 +0.1 926,610 - MPMX19_00892 0.84 -0.4 926,610 - MPMX19_00892 0.84 +0.1 926,610 - MPMX19_00892 0.84 -1.0 926,837 + +0.4 926,838 - +0.4 926,838 - -1.8 926,838 - -1.4 926,838 - -0.8 926,900 + +1.4 926,900 + -0.2 926,900 + -1.6 926,900 + -0.3 926,900 + -1.1 927,092 + -0.2 927,092 + -0.8 927,092 + +0.4 927,092 + -1.2 927,092 + -1.4 927,092 + +0.1 927,093 - +0.2 927,093 - +0.1 927,093 - -1.5 927,093 - -0.8 927,093 - +2.4 927,093 - -1.8 927,093 - -0.9 927,093 - -1.2 927,093 - -0.2 927,093 - +2.0 927,093 - -1.3 927,095 + -1.5 927,095 + -1.4 927,095 + +0.4 927,095 + -0.2 927,095 + +0.2 927,095 + -2.0 927,096 - +0.2 927,097 + -0.9 927,097 + -1.4 927,097 + -0.8 927,098 - -2.3 927,098 - -0.3 927,127 + -0.4 927,335 + +2.0 927,335 + -0.9 927,335 + -1.2 927,336 - +2.0 927,336 - +0.7 927,386 + +0.8 927,386 + -0.2 927,386 + -0.2 927,386 + -0.9 927,386 + -0.1 927,386 + -0.8 927,386 + -1.7 927,386 + -0.3 927,386 + -0.9 927,386 + +2.4 927,386 + -0.0 927,386 + -0.6 927,386 + -1.2 927,386 + -2.0 927,386 + -0.0 927,386 + -0.2 927,386 + -0.2 927,386 + -1.2 927,386 + -1.5 927,386 + -1.0 927,386 + -1.6 927,386 + +0.4 927,386 + -0.9 927,386 + -0.2 927,386 + -0.8 927,386 + +0.3 927,387 - +0.4 927,387 - +0.4 927,387 - -0.6 927,387 - -0.4 927,387 - +0.8 927,387 - -0.5 927,387 - +0.6 927,387 - +0.3 927,387 - +0.4 927,387 - +1.4 927,387 - -0.0 927,387 - -0.2 927,387 - +0.4 927,387 - -0.6 927,387 - -1.2 927,387 - -0.5 927,387 - +2.4 927,387 - -1.2 927,387 - -0.6 927,387 - +0.8 927,387 - -0.0 927,387 - +1.0 927,387 - +1.2 927,387 - -0.9 927,387 - +0.7 927,387 - +0.6 927,387 - +0.6 927,387 - -1.2 927,387 - -0.2 927,387 - +0.5 927,387 - -2.6 927,458 + MPMX19_00893 0.13 -1.7 927,458 + MPMX19_00893 0.13 -0.9 927,458 + MPMX19_00893 0.13 +0.3 927,459 - MPMX19_00893 0.13 -0.6 927,459 - MPMX19_00893 0.13 -2.0 927,476 + MPMX19_00893 0.14 -2.4 927,476 + MPMX19_00893 0.14 -0.9 927,476 + MPMX19_00893 0.14 -1.2 927,477 - MPMX19_00893 0.14 +0.8 927,477 - MPMX19_00893 0.14 -0.6 927,477 - MPMX19_00893 0.14 +0.4 927,477 - MPMX19_00893 0.14 +0.4 927,644 + MPMX19_00893 0.25 +0.7 927,644 + MPMX19_00893 0.25 +0.4 927,645 - MPMX19_00893 0.26 -0.0 927,645 - MPMX19_00893 0.26 -1.2 927,645 - MPMX19_00893 0.26 -0.6 927,645 - MPMX19_00893 0.26 -0.4 927,645 - MPMX19_00893 0.26 -0.3 927,829 - MPMX19_00893 0.38 -0.4 927,829 - MPMX19_00893 0.38 +0.8 927,957 - MPMX19_00893 0.46 -1.4 927,957 - MPMX19_00893 0.46 +1.4 928,037 + MPMX19_00893 0.51 -0.9 928,037 + MPMX19_00893 0.51 -1.5 928,037 + MPMX19_00893 0.51 -0.2 928,037 + MPMX19_00893 0.51 -0.6 928,037 + MPMX19_00893 0.51 -1.0 928,037 + MPMX19_00893 0.51 -0.5 928,037 + MPMX19_00893 0.51 -0.0 928,037 + MPMX19_00893 0.51 -0.7 928,037 + MPMX19_00893 0.51 -1.6 928,037 + MPMX19_00893 0.51 -1.4 928,037 + MPMX19_00893 0.51 -0.4 928,037 + MPMX19_00893 0.51 -0.8 928,037 + MPMX19_00893 0.51 +1.0 928,037 + MPMX19_00893 0.51 +1.4 928,037 + MPMX19_00893 0.51 -0.2 928,038 - MPMX19_00893 0.52 -2.5 928,038 - MPMX19_00893 0.52 -0.1 928,038 - MPMX19_00893 0.52 -1.6 928,038 - MPMX19_00893 0.52 +0.6 928,038 - MPMX19_00893 0.52 -0.8 928,038 - MPMX19_00893 0.52 -0.5 928,038 - MPMX19_00893 0.52 -1.3 928,038 - MPMX19_00893 0.52 -1.3 928,038 - MPMX19_00893 0.52 -0.9 928,038 - MPMX19_00893 0.52 -0.6 928,038 - MPMX19_00893 0.52 -0.2 928,038 - MPMX19_00893 0.52 -0.6 928,038 - MPMX19_00893 0.52 -2.2 928,067 + MPMX19_00893 0.53 -0.2 928,067 + MPMX19_00893 0.53 -0.8 928,067 + MPMX19_00893 0.53 -2.0 928,067 + MPMX19_00893 0.53 -0.9 928,068 - MPMX19_00893 0.54 -0.9 928,068 - MPMX19_00893 0.54 -0.8 928,068 - MPMX19_00893 0.54 -0.2 928,068 - MPMX19_00893 0.54 -1.2 928,068 - MPMX19_00893 0.54 +0.1 928,068 - MPMX19_00893 0.54 -1.6 928,196 + MPMX19_00893 0.62 -1.9 928,197 - MPMX19_00893 0.62 -0.9 928,197 - MPMX19_00893 0.62 -0.8 928,197 - MPMX19_00893 0.62 -1.8 928,370 + MPMX19_00893 0.73 -0.3 928,370 + MPMX19_00893 0.73 +0.4 928,370 + MPMX19_00893 0.73 -0.6 928,370 + MPMX19_00893 0.73 -0.2 928,370 + MPMX19_00893 0.73 +1.2 928,370 + MPMX19_00893 0.73 +0.4 928,370 + MPMX19_00893 0.73 +0.2 928,370 + MPMX19_00893 0.73 +0.4 928,370 + MPMX19_00893 0.73 -0.6 928,370 + MPMX19_00893 0.73 +0.2 928,370 + MPMX19_00893 0.73 -1.0 928,370 + MPMX19_00893 0.73 -1.6 928,371 - MPMX19_00893 0.74 +0.4 928,371 - MPMX19_00893 0.74 +0.7 928,371 - MPMX19_00893 0.74 -0.2 928,371 - MPMX19_00893 0.74 +0.2 928,371 - MPMX19_00893 0.74 -0.8 928,371 - MPMX19_00893 0.74 -0.5 928,371 - MPMX19_00893 0.74 -0.1 928,371 - MPMX19_00893 0.74 +0.4 928,371 - MPMX19_00893 0.74 -1.4 928,379 + MPMX19_00893 0.74 -0.2 928,379 + MPMX19_00893 0.74 -0.9 928,380 - MPMX19_00893 0.74 -0.8 928,380 - MPMX19_00893 0.74 +0.4 928,380 - MPMX19_00893 0.74 -0.6 928,380 - MPMX19_00893 0.74 +0.7 928,380 - MPMX19_00893 0.74 -1.4 928,380 - MPMX19_00893 0.74 +0.7 928,661 + -0.2 928,661 + -1.8 928,661 + +1.4 928,661 + -0.8 928,661 + -1.4 928,661 + -0.9 928,661 + -1.9 928,661 + +0.7 928,661 + -0.2 928,661 - -0.9 928,662 - -1.2 928,662 - +1.4 928,662 - -0.6 928,662 - +1.0 928,662 - +1.4 928,662 - +0.1 928,662 - +0.4 928,662 - -0.1 928,730 + +0.4 928,731 - -0.9 928,731 - -0.4 928,731 - -0.8 928,731 - +1.2 928,752 + -0.9 928,864 + -0.2 928,865 - -2.2
Or see this region's nucleotide sequence