Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00754 and MPMX19_00755 are separated by 9 nucleotides MPMX19_00755 and MPMX19_00756 are separated by 59 nucleotides MPMX19_00756 and MPMX19_00757 are separated by 59 nucleotides MPMX19_00757 and MPMX19_00758 are separated by 365 nucleotides MPMX19_00758 and MPMX19_00759 are separated by 91 nucleotides
MPMX19_00754: MPMX19_00754 - hypothetical protein, at 770,683 to 771,405
_00754
MPMX19_00755: MPMX19_00755 - hypothetical protein, at 771,415 to 771,774
_00755
MPMX19_00756: MPMX19_00756 - hypothetical protein, at 771,834 to 772,088
_00756
MPMX19_00757: MPMX19_00757 - Carbamoyl-phosphate synthase small chain, at 772,148 to 773,320
_00757
MPMX19_00758: MPMX19_00758 - putative protein YqeY, at 773,686 to 774,150
_00758
MPMX19_00759: MPMX19_00759 - hypothetical protein, at 774,242 to 774,838
_00759
Position (kb) 772
773
774 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 771.169 kb on - strand, within MPMX19_00754 at 771.319 kb on + strand, within MPMX19_00754 at 771.319 kb on + strand, within MPMX19_00754 at 771.319 kb on + strand, within MPMX19_00754 at 771.319 kb on + strand, within MPMX19_00754 at 771.319 kb on + strand, within MPMX19_00754 at 771.319 kb on + strand, within MPMX19_00754 at 771.319 kb on + strand, within MPMX19_00754 at 771.319 kb on + strand, within MPMX19_00754 at 771.319 kb on + strand, within MPMX19_00754 at 771.320 kb on - strand, within MPMX19_00754 at 771.320 kb on - strand, within MPMX19_00754 at 771.320 kb on - strand, within MPMX19_00754 at 771.320 kb on - strand, within MPMX19_00754 at 771.320 kb on - strand, within MPMX19_00754 at 771.320 kb on - strand, within MPMX19_00754 at 771.320 kb on - strand, within MPMX19_00754 at 771.361 kb on + strand at 771.361 kb on + strand at 771.361 kb on + strand at 771.361 kb on + strand at 771.361 kb on + strand at 771.361 kb on + strand at 771.361 kb on + strand at 771.361 kb on + strand at 771.361 kb on + strand at 771.361 kb on + strand at 771.361 kb on + strand at 771.361 kb on + strand at 771.362 kb on - strand at 771.362 kb on - strand at 771.362 kb on - strand at 771.362 kb on - strand at 771.362 kb on - strand at 771.362 kb on - strand at 771.362 kb on - strand at 771.362 kb on - strand at 771.362 kb on - strand at 771.362 kb on - strand at 771.362 kb on - strand at 771.638 kb on + strand, within MPMX19_00755 at 771.638 kb on + strand, within MPMX19_00755 at 771.638 kb on + strand, within MPMX19_00755 at 771.638 kb on + strand, within MPMX19_00755 at 771.638 kb on + strand, within MPMX19_00755 at 771.638 kb on + strand, within MPMX19_00755 at 771.639 kb on - strand, within MPMX19_00755 at 771.639 kb on - strand, within MPMX19_00755 at 771.639 kb on - strand, within MPMX19_00755 at 771.639 kb on - strand, within MPMX19_00755 at 771.639 kb on - strand, within MPMX19_00755 at 771.639 kb on - strand, within MPMX19_00755 at 771.639 kb on - strand, within MPMX19_00755 at 771.639 kb on - strand, within MPMX19_00755 at 771.833 kb on + strand at 771.833 kb on + strand at 771.834 kb on - strand at 771.960 kb on + strand, within MPMX19_00756 at 771.960 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.008 kb on + strand, within MPMX19_00756 at 772.009 kb on - strand, within MPMX19_00756 at 772.009 kb on - strand, within MPMX19_00756 at 772.009 kb on - strand, within MPMX19_00756 at 772.009 kb on - strand, within MPMX19_00756 at 772.009 kb on - strand, within MPMX19_00756 at 772.009 kb on - strand, within MPMX19_00756 at 772.009 kb on - strand, within MPMX19_00756 at 772.009 kb on - strand, within MPMX19_00756 at 772.009 kb on - strand, within MPMX19_00756 at 772.009 kb on - strand, within MPMX19_00756 at 772.009 kb on - strand, within MPMX19_00756 at 772.009 kb on - strand, within MPMX19_00756 at 772.009 kb on - strand, within MPMX19_00756 at 772.009 kb on - strand, within MPMX19_00756 at 772.009 kb on - strand, within MPMX19_00756 at 772.027 kb on + strand, within MPMX19_00756 at 772.028 kb on - strand, within MPMX19_00756 at 772.028 kb on - strand, within MPMX19_00756 at 772.076 kb on + strand at 772.077 kb on - strand at 772.077 kb on - strand at 772.077 kb on - strand at 772.086 kb on + strand at 772.087 kb on - strand at 772.087 kb on - strand at 772.087 kb on - strand at 772.089 kb on - strand at 773.413 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.493 kb on - strand at 773.493 kb on - strand at 773.493 kb on - strand at 773.493 kb on - strand at 773.493 kb on - strand at 773.493 kb on - strand at 773.493 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.627 kb on + strand at 773.627 kb on + strand at 773.627 kb on + strand at 773.628 kb on - strand at 773.653 kb on + strand at 773.653 kb on + strand at 773.653 kb on + strand at 773.654 kb on - strand at 773.654 kb on - strand at 773.899 kb on + strand, within MPMX19_00758 at 773.899 kb on + strand, within MPMX19_00758 at 773.899 kb on + strand, within MPMX19_00758 at 773.899 kb on + strand, within MPMX19_00758 at 773.899 kb on + strand, within MPMX19_00758 at 773.899 kb on + strand, within MPMX19_00758 at 773.899 kb on + strand, within MPMX19_00758 at 773.899 kb on + strand, within MPMX19_00758 at 773.899 kb on + strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.965 kb on + strand, within MPMX19_00758 at 773.965 kb on + strand, within MPMX19_00758 at 773.965 kb on + strand, within MPMX19_00758 at 773.965 kb on + strand, within MPMX19_00758 at 773.965 kb on + strand, within MPMX19_00758 at 773.965 kb on + strand, within MPMX19_00758 at 773.965 kb on + strand, within MPMX19_00758 at 773.965 kb on + strand, within MPMX19_00758 at 773.965 kb on + strand, within MPMX19_00758 at 773.966 kb on - strand, within MPMX19_00758 at 773.966 kb on - strand, within MPMX19_00758 at 773.966 kb on - strand, within MPMX19_00758 at 773.966 kb on - strand, within MPMX19_00758 at 773.966 kb on - strand, within MPMX19_00758 at 773.966 kb on - strand, within MPMX19_00758 at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 771,169 - MPMX19_00754 0.67 -0.6 771,319 + MPMX19_00754 0.88 +0.1 771,319 + MPMX19_00754 0.88 -0.7 771,319 + MPMX19_00754 0.88 +0.1 771,319 + MPMX19_00754 0.88 -0.6 771,319 + MPMX19_00754 0.88 -0.4 771,319 + MPMX19_00754 0.88 -0.7 771,319 + MPMX19_00754 0.88 +1.8 771,319 + MPMX19_00754 0.88 -0.9 771,319 + MPMX19_00754 0.88 -0.6 771,320 - MPMX19_00754 0.88 +0.4 771,320 - MPMX19_00754 0.88 -1.2 771,320 - MPMX19_00754 0.88 -0.3 771,320 - MPMX19_00754 0.88 +0.6 771,320 - MPMX19_00754 0.88 -1.3 771,320 - MPMX19_00754 0.88 -0.9 771,320 - MPMX19_00754 0.88 -0.2 771,361 + +0.8 771,361 + -0.2 771,361 + -0.4 771,361 + -1.4 771,361 + +1.1 771,361 + -0.6 771,361 + -0.9 771,361 + -0.7 771,361 + -1.7 771,361 + +1.1 771,361 + -1.6 771,361 + -0.7 771,362 - -0.9 771,362 - +1.7 771,362 - -0.4 771,362 - -0.4 771,362 - -1.0 771,362 - +0.6 771,362 - -1.4 771,362 - +0.4 771,362 - -1.2 771,362 - +1.8 771,362 - -1.2 771,638 + MPMX19_00755 0.62 -2.3 771,638 + MPMX19_00755 0.62 -1.6 771,638 + MPMX19_00755 0.62 -0.0 771,638 + MPMX19_00755 0.62 -1.4 771,638 + MPMX19_00755 0.62 -1.4 771,638 + MPMX19_00755 0.62 +0.8 771,639 - MPMX19_00755 0.62 -0.2 771,639 - MPMX19_00755 0.62 +0.1 771,639 - MPMX19_00755 0.62 -0.9 771,639 - MPMX19_00755 0.62 -0.7 771,639 - MPMX19_00755 0.62 -0.7 771,639 - MPMX19_00755 0.62 -1.3 771,639 - MPMX19_00755 0.62 -1.4 771,639 - MPMX19_00755 0.62 -0.2 771,833 + +1.4 771,833 + -0.7 771,834 - -1.3 771,960 + MPMX19_00756 0.49 -0.0 771,960 + MPMX19_00756 0.49 -0.2 772,008 + MPMX19_00756 0.68 -0.2 772,008 + MPMX19_00756 0.68 -1.1 772,008 + MPMX19_00756 0.68 +1.0 772,008 + MPMX19_00756 0.68 -0.9 772,008 + MPMX19_00756 0.68 -0.5 772,008 + MPMX19_00756 0.68 +0.1 772,008 + MPMX19_00756 0.68 -1.9 772,008 + MPMX19_00756 0.68 -1.4 772,008 + MPMX19_00756 0.68 +2.0 772,008 + MPMX19_00756 0.68 +0.6 772,008 + MPMX19_00756 0.68 -1.2 772,008 + MPMX19_00756 0.68 -0.2 772,008 + MPMX19_00756 0.68 +0.4 772,008 + MPMX19_00756 0.68 -0.6 772,008 + MPMX19_00756 0.68 -0.2 772,008 + MPMX19_00756 0.68 -0.7 772,008 + MPMX19_00756 0.68 -0.6 772,008 + MPMX19_00756 0.68 -0.6 772,008 + MPMX19_00756 0.68 +0.1 772,008 + MPMX19_00756 0.68 -0.6 772,008 + MPMX19_00756 0.68 +1.2 772,009 - MPMX19_00756 0.69 -0.7 772,009 - MPMX19_00756 0.69 -0.5 772,009 - MPMX19_00756 0.69 +1.0 772,009 - MPMX19_00756 0.69 -1.1 772,009 - MPMX19_00756 0.69 -1.9 772,009 - MPMX19_00756 0.69 -0.2 772,009 - MPMX19_00756 0.69 -0.4 772,009 - MPMX19_00756 0.69 +0.1 772,009 - MPMX19_00756 0.69 -0.9 772,009 - MPMX19_00756 0.69 -2.7 772,009 - MPMX19_00756 0.69 -0.6 772,009 - MPMX19_00756 0.69 -0.5 772,009 - MPMX19_00756 0.69 -0.9 772,009 - MPMX19_00756 0.69 -1.6 772,009 - MPMX19_00756 0.69 -0.6 772,027 + MPMX19_00756 0.76 -0.2 772,028 - MPMX19_00756 0.76 +0.0 772,028 - MPMX19_00756 0.76 -1.7 772,076 + -2.5 772,077 - +0.1 772,077 - -1.1 772,077 - -0.4 772,086 + -1.6 772,087 - -0.7 772,087 - -0.4 772,087 - +3.0 772,089 - +0.4 773,413 - -0.2 773,491 - -2.0 773,491 - -1.4 773,491 - -2.3 773,491 - +0.2 773,491 - +0.1 773,491 - -0.4 773,491 - +0.3 773,491 - +0.4 773,491 - -0.1 773,491 - -0.2 773,491 - -1.4 773,491 - -1.4 773,491 - +0.1 773,491 - -0.9 773,491 - +1.1 773,491 - +0.4 773,491 - +0.4 773,491 - -0.7 773,491 - +0.4 773,491 - -2.0 773,491 - -0.9 773,491 - -0.9 773,491 - +0.4 773,491 - +0.4 773,491 - -0.6 773,491 - +0.4 773,493 - -3.0 773,493 - -0.9 773,493 - +0.1 773,493 - -0.7 773,493 - -1.2 773,493 - +0.2 773,493 - -0.4 773,523 - -1.4 773,523 - -1.9 773,523 - -1.1 773,523 - -0.9 773,523 - -0.9 773,523 - -0.9 773,523 - -1.6 773,523 - +0.1 773,523 - -0.2 773,523 - -1.7 773,523 - -0.8 773,523 - -3.3 773,523 - +0.1 773,523 - -0.6 773,523 - -1.0 773,523 - -0.9 773,523 - -0.6 773,523 - -1.2 773,523 - +0.1 773,627 + -0.2 773,627 + -0.2 773,627 + -1.0 773,628 - -0.2 773,653 + -1.4 773,653 + -0.5 773,653 + -1.2 773,654 - -1.6 773,654 - -2.2 773,899 + MPMX19_00758 0.46 -1.4 773,899 + MPMX19_00758 0.46 -0.4 773,899 + MPMX19_00758 0.46 -1.5 773,899 + MPMX19_00758 0.46 -0.5 773,899 + MPMX19_00758 0.46 -2.5 773,899 + MPMX19_00758 0.46 -0.3 773,899 + MPMX19_00758 0.46 -1.7 773,899 + MPMX19_00758 0.46 +0.6 773,899 + MPMX19_00758 0.46 +1.4 773,900 - MPMX19_00758 0.46 -0.9 773,900 - MPMX19_00758 0.46 +0.4 773,900 - MPMX19_00758 0.46 -1.3 773,900 - MPMX19_00758 0.46 +2.4 773,900 - MPMX19_00758 0.46 +0.0 773,900 - MPMX19_00758 0.46 -1.9 773,900 - MPMX19_00758 0.46 -1.0 773,900 - MPMX19_00758 0.46 -0.4 773,900 - MPMX19_00758 0.46 -1.9 773,900 - MPMX19_00758 0.46 -0.6 773,900 - MPMX19_00758 0.46 -1.1 773,965 + MPMX19_00758 0.60 +1.4 773,965 + MPMX19_00758 0.60 +0.4 773,965 + MPMX19_00758 0.60 -1.7 773,965 + MPMX19_00758 0.60 -1.2 773,965 + MPMX19_00758 0.60 -1.2 773,965 + MPMX19_00758 0.60 -2.2 773,965 + MPMX19_00758 0.60 -1.1 773,965 + MPMX19_00758 0.60 -2.9 773,965 + MPMX19_00758 0.60 -0.7 773,966 - MPMX19_00758 0.60 -0.2 773,966 - MPMX19_00758 0.60 -1.4 773,966 - MPMX19_00758 0.60 -1.9 773,966 - MPMX19_00758 0.60 -0.9 773,966 - MPMX19_00758 0.60 -2.7 773,966 - MPMX19_00758 0.60 -1.9 774,148 + +0.4 774,148 + -1.4 774,148 + -0.6 774,148 + -0.4 774,148 + -2.9 774,148 + +0.2 774,148 + +0.9 774,148 + -1.7 774,148 + -1.6 774,148 + -0.6 774,148 + -0.6 774,148 + -0.9 774,148 + -2.7 774,148 + -2.4 774,148 + +1.4 774,148 + -0.7 774,148 + +0.8 774,148 + -0.5 774,148 + -0.8 774,148 + -1.6 774,148 + -0.5 774,148 + -1.2 774,148 + -0.9 774,148 + -0.9 774,149 - -0.2 774,149 - +0.3 774,149 - -1.4 774,149 - +0.2 774,149 - -1.5 774,149 - -1.1 774,149 - +0.4 774,149 - -0.4 774,149 - -0.2 774,149 - +0.2 774,149 - -1.4 774,149 - -0.8 774,149 - -0.2 774,149 - -1.4 774,149 - -1.4 774,149 - -0.8 774,149 - -2.2 774,149 - +1.4 774,149 - +0.8 774,149 - -3.0 774,149 - +0.9
Or see this region's nucleotide sequence