Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00715 and MPMX19_00716 are separated by 104 nucleotides MPMX19_00716 and MPMX19_00717 are separated by 209 nucleotides
MPMX19_00715: MPMX19_00715 - hypothetical protein, at 737,541 to 739,052
_00715
MPMX19_00716: MPMX19_00716 - Hydrogenase maturation factor HypD, at 739,157 to 740,269
_00716
MPMX19_00717: MPMX19_00717 - hypothetical protein, at 740,479 to 741,300
_00717
Position (kb) 739
740
741 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 738.651 kb on + strand, within MPMX19_00715 at 738.651 kb on + strand, within MPMX19_00715 at 738.651 kb on + strand, within MPMX19_00715 at 738.652 kb on - strand, within MPMX19_00715 at 738.652 kb on - strand, within MPMX19_00715 at 738.652 kb on - strand, within MPMX19_00715 at 738.652 kb on - strand, within MPMX19_00715 at 738.652 kb on - strand, within MPMX19_00715 at 738.652 kb on - strand, within MPMX19_00715 at 738.696 kb on + strand, within MPMX19_00715 at 738.696 kb on + strand, within MPMX19_00715 at 738.696 kb on + strand, within MPMX19_00715 at 738.696 kb on + strand, within MPMX19_00715 at 738.697 kb on - strand, within MPMX19_00715 at 738.795 kb on + strand, within MPMX19_00715 at 738.795 kb on + strand, within MPMX19_00715 at 738.795 kb on + strand, within MPMX19_00715 at 738.795 kb on + strand, within MPMX19_00715 at 738.795 kb on + strand, within MPMX19_00715 at 738.795 kb on + strand, within MPMX19_00715 at 738.796 kb on - strand, within MPMX19_00715 at 738.796 kb on - strand, within MPMX19_00715 at 738.796 kb on - strand, within MPMX19_00715 at 738.796 kb on - strand, within MPMX19_00715 at 738.942 kb on + strand at 738.942 kb on + strand at 738.942 kb on + strand at 738.943 kb on - strand at 739.041 kb on + strand at 739.041 kb on + strand at 739.041 kb on + strand at 739.041 kb on + strand at 739.041 kb on + strand at 739.041 kb on + strand at 739.041 kb on + strand at 739.041 kb on + strand at 739.041 kb on + strand at 739.041 kb on + strand at 739.041 kb on + strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.058 kb on + strand at 739.058 kb on + strand at 739.058 kb on + strand at 739.102 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.163 kb on + strand at 739.163 kb on + strand at 739.163 kb on + strand at 739.163 kb on + strand at 739.163 kb on + strand at 739.163 kb on + strand at 739.163 kb on + strand at 739.163 kb on + strand at 739.163 kb on + strand at 739.163 kb on + strand at 739.164 kb on - strand at 739.164 kb on - strand at 739.164 kb on - strand at 739.164 kb on - strand at 739.164 kb on - strand at 739.164 kb on - strand at 739.164 kb on - strand at 739.164 kb on - strand at 739.244 kb on + strand at 739.244 kb on + strand at 739.244 kb on + strand at 739.244 kb on + strand at 739.244 kb on + strand at 739.244 kb on + strand at 739.244 kb on + strand at 739.244 kb on + strand at 739.244 kb on + strand at 739.244 kb on + strand at 739.244 kb on + strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.293 kb on - strand, within MPMX19_00716 at 739.293 kb on - strand, within MPMX19_00716 at 739.293 kb on - strand, within MPMX19_00716 at 739.427 kb on + strand, within MPMX19_00716 at 739.427 kb on + strand, within MPMX19_00716 at 739.427 kb on + strand, within MPMX19_00716 at 739.427 kb on + strand, within MPMX19_00716 at 739.427 kb on + strand, within MPMX19_00716 at 739.427 kb on + strand, within MPMX19_00716 at 739.427 kb on + strand, within MPMX19_00716 at 739.427 kb on + strand, within MPMX19_00716 at 739.427 kb on + strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.781 kb on + strand, within MPMX19_00716 at 739.781 kb on + strand, within MPMX19_00716 at 739.781 kb on + strand, within MPMX19_00716 at 739.781 kb on + strand, within MPMX19_00716 at 739.782 kb on - strand, within MPMX19_00716 at 739.782 kb on - strand, within MPMX19_00716 at 739.782 kb on - strand, within MPMX19_00716 at 740.045 kb on + strand, within MPMX19_00716 at 740.045 kb on + strand, within MPMX19_00716 at 740.045 kb on + strand, within MPMX19_00716 at 740.045 kb on + strand, within MPMX19_00716 at 740.045 kb on + strand, within MPMX19_00716 at 740.045 kb on + strand, within MPMX19_00716 at 740.045 kb on + strand, within MPMX19_00716 at 740.046 kb on - strand, within MPMX19_00716 at 740.046 kb on - strand, within MPMX19_00716 at 740.046 kb on - strand, within MPMX19_00716 at 740.046 kb on - strand, within MPMX19_00716 at 740.046 kb on - strand, within MPMX19_00716 at 740.240 kb on + strand at 740.240 kb on + strand at 740.240 kb on + strand at 740.240 kb on + strand at 740.240 kb on + strand at 740.240 kb on + strand at 740.240 kb on + strand at 740.240 kb on + strand at 740.240 kb on + strand at 740.240 kb on + strand at 740.240 kb on + strand at 740.240 kb on + strand at 740.240 kb on + strand at 740.240 kb on + strand at 740.241 kb on - strand at 740.241 kb on - strand at 740.241 kb on - strand at 740.241 kb on - strand at 740.241 kb on - strand at 740.241 kb on - strand at 740.241 kb on - strand at 740.241 kb on - strand at 740.241 kb on - strand at 740.241 kb on - strand at 740.241 kb on - strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.246 kb on + strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.247 kb on - strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.464 kb on - strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.743 kb on + strand, within MPMX19_00717 at 740.743 kb on + strand, within MPMX19_00717 at 740.743 kb on + strand, within MPMX19_00717 at 740.743 kb on + strand, within MPMX19_00717 at 740.744 kb on - strand, within MPMX19_00717 at 740.744 kb on - strand, within MPMX19_00717 at 740.744 kb on - strand, within MPMX19_00717 at 740.744 kb on - strand, within MPMX19_00717 at 740.744 kb on - strand, within MPMX19_00717 at 740.744 kb on - strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.810 kb on - strand, within MPMX19_00717 at 740.810 kb on - strand, within MPMX19_00717 at 740.810 kb on - strand, within MPMX19_00717 at 740.810 kb on - strand, within MPMX19_00717 at 740.899 kb on + strand, within MPMX19_00717 at 740.899 kb on + strand, within MPMX19_00717 at 740.900 kb on - strand, within MPMX19_00717 at 740.900 kb on - strand, within MPMX19_00717 at 740.900 kb on - strand, within MPMX19_00717 at 741.217 kb on + strand, within MPMX19_00717 at 741.217 kb on + strand, within MPMX19_00717 at 741.217 kb on + strand, within MPMX19_00717 at 741.217 kb on + strand, within MPMX19_00717 at 741.218 kb on - strand at 741.218 kb on - strand at 741.218 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 738,651 + MPMX19_00715 0.73 -0.3 738,651 + MPMX19_00715 0.73 -0.9 738,651 + MPMX19_00715 0.73 -0.1 738,652 - MPMX19_00715 0.73 -2.3 738,652 - MPMX19_00715 0.73 -1.3 738,652 - MPMX19_00715 0.73 -0.4 738,652 - MPMX19_00715 0.73 +0.0 738,652 - MPMX19_00715 0.73 +0.1 738,652 - MPMX19_00715 0.73 -0.9 738,696 + MPMX19_00715 0.76 -1.1 738,696 + MPMX19_00715 0.76 -1.1 738,696 + MPMX19_00715 0.76 -0.0 738,696 + MPMX19_00715 0.76 -0.9 738,697 - MPMX19_00715 0.76 +0.9 738,795 + MPMX19_00715 0.83 -0.3 738,795 + MPMX19_00715 0.83 -1.4 738,795 + MPMX19_00715 0.83 +0.9 738,795 + MPMX19_00715 0.83 -1.1 738,795 + MPMX19_00715 0.83 -2.9 738,795 + MPMX19_00715 0.83 -1.9 738,796 - MPMX19_00715 0.83 -0.6 738,796 - MPMX19_00715 0.83 -0.5 738,796 - MPMX19_00715 0.83 +0.4 738,796 - MPMX19_00715 0.83 +0.1 738,942 + +1.0 738,942 + -1.4 738,942 + +1.2 738,943 - -0.9 739,041 + -0.4 739,041 + -1.1 739,041 + -1.6 739,041 + -1.0 739,041 + -0.6 739,041 + -0.6 739,041 + +1.4 739,041 + -0.1 739,041 + +1.4 739,041 + +0.4 739,041 + +0.1 739,042 - -0.7 739,042 - -0.4 739,042 - -0.6 739,042 - +0.7 739,042 - -1.1 739,042 - -0.9 739,042 - -0.4 739,042 - -0.3 739,042 - +0.1 739,042 - -1.8 739,042 - -0.1 739,042 - -0.9 739,042 - +0.4 739,042 - +1.3 739,042 - -2.1 739,042 - -1.1 739,042 - -0.4 739,058 + -0.6 739,058 + +0.4 739,058 + -0.3 739,102 + -0.9 739,112 + +1.4 739,112 + -0.0 739,112 + -0.6 739,112 + +1.0 739,112 + +2.0 739,112 + +0.2 739,112 + -1.4 739,112 + +2.2 739,112 + -1.0 739,112 + +0.4 739,112 + +0.6 739,112 + -0.8 739,112 + -1.6 739,112 + +0.4 739,112 + -0.9 739,113 - -1.6 739,113 - -1.4 739,113 - -2.9 739,113 - +0.3 739,113 - +0.7 739,113 - -2.1 739,113 - -0.8 739,113 - -2.1 739,113 - +0.3 739,113 - -0.1 739,113 - +0.7 739,113 - -1.1 739,163 + -0.9 739,163 + +0.4 739,163 + -1.0 739,163 + -0.8 739,163 + -1.0 739,163 + -0.1 739,163 + -0.2 739,163 + -1.4 739,163 + -0.6 739,163 + -0.9 739,164 - +0.1 739,164 - -1.9 739,164 - +0.1 739,164 - -0.0 739,164 - -0.6 739,164 - -0.7 739,164 - -0.4 739,164 - -0.7 739,244 + +0.3 739,244 + +0.4 739,244 + +0.4 739,244 + +0.6 739,244 + -3.4 739,244 + -2.2 739,244 + -0.6 739,244 + -0.9 739,244 + -2.0 739,244 + -0.9 739,244 + -0.1 739,245 - -1.5 739,245 - -0.6 739,245 - -1.3 739,245 - +0.4 739,245 - -0.4 739,245 - -0.3 739,245 - +1.1 739,245 - +1.0 739,245 - -0.6 739,245 - -2.1 739,245 - -0.6 739,245 - -1.1 739,293 - MPMX19_00716 0.12 -1.1 739,293 - MPMX19_00716 0.12 -0.9 739,293 - MPMX19_00716 0.12 -0.4 739,427 + MPMX19_00716 0.24 +1.1 739,427 + MPMX19_00716 0.24 -1.7 739,427 + MPMX19_00716 0.24 -0.8 739,427 + MPMX19_00716 0.24 -0.6 739,427 + MPMX19_00716 0.24 -0.1 739,427 + MPMX19_00716 0.24 -1.1 739,427 + MPMX19_00716 0.24 +0.7 739,427 + MPMX19_00716 0.24 -0.1 739,427 + MPMX19_00716 0.24 +0.4 739,428 - MPMX19_00716 0.24 +1.4 739,428 - MPMX19_00716 0.24 -1.7 739,428 - MPMX19_00716 0.24 -1.0 739,428 - MPMX19_00716 0.24 -0.9 739,428 - MPMX19_00716 0.24 -0.8 739,428 - MPMX19_00716 0.24 -0.1 739,428 - MPMX19_00716 0.24 -1.2 739,428 - MPMX19_00716 0.24 -1.1 739,428 - MPMX19_00716 0.24 +0.2 739,428 - MPMX19_00716 0.24 +0.9 739,428 - MPMX19_00716 0.24 -1.1 739,428 - MPMX19_00716 0.24 +0.4 739,428 - MPMX19_00716 0.24 +0.4 739,781 + MPMX19_00716 0.56 +0.4 739,781 + MPMX19_00716 0.56 -1.6 739,781 + MPMX19_00716 0.56 -0.1 739,781 + MPMX19_00716 0.56 -0.1 739,782 - MPMX19_00716 0.56 +0.1 739,782 - MPMX19_00716 0.56 -0.6 739,782 - MPMX19_00716 0.56 -0.6 740,045 + MPMX19_00716 0.80 -0.6 740,045 + MPMX19_00716 0.80 -1.0 740,045 + MPMX19_00716 0.80 -1.3 740,045 + MPMX19_00716 0.80 +0.4 740,045 + MPMX19_00716 0.80 -0.4 740,045 + MPMX19_00716 0.80 -1.1 740,045 + MPMX19_00716 0.80 +0.7 740,046 - MPMX19_00716 0.80 -1.1 740,046 - MPMX19_00716 0.80 +1.4 740,046 - MPMX19_00716 0.80 -1.4 740,046 - MPMX19_00716 0.80 -1.1 740,046 - MPMX19_00716 0.80 -2.1 740,240 + +0.3 740,240 + -0.5 740,240 + -0.3 740,240 + -0.6 740,240 + +0.2 740,240 + +1.1 740,240 + -1.3 740,240 + +0.0 740,240 + -1.1 740,240 + +0.4 740,240 + -1.6 740,240 + -0.1 740,240 + +0.7 740,240 + -0.6 740,241 - +0.1 740,241 - +0.1 740,241 - -0.1 740,241 - -0.6 740,241 - -0.1 740,241 - -0.1 740,241 - +0.4 740,241 - -0.1 740,241 - -0.1 740,241 - -0.6 740,241 - -1.4 740,246 + -1.4 740,246 + +1.7 740,246 + -0.9 740,246 + -0.9 740,246 + +0.4 740,246 + +0.1 740,246 + -0.4 740,246 + -1.7 740,246 + -0.1 740,246 + -0.1 740,246 + +1.2 740,246 + -0.7 740,246 + -0.9 740,246 + -0.6 740,246 + -0.6 740,246 + +0.2 740,246 + +0.5 740,246 + -0.1 740,246 + +1.0 740,246 + -0.1 740,246 + +0.3 740,246 + +1.4 740,246 + +0.9 740,246 + +1.4 740,246 + -0.1 740,246 + +0.3 740,246 + -0.6 740,246 + -1.3 740,246 + -0.9 740,246 + -0.1 740,246 + -0.4 740,246 + -0.4 740,246 + +0.8 740,246 + +0.4 740,246 + +0.9 740,246 + -1.1 740,246 + +0.0 740,246 + -1.0 740,247 - +0.8 740,247 - -1.9 740,247 - -0.9 740,247 - -1.7 740,247 - -0.9 740,247 - +0.6 740,247 - -1.8 740,247 - -0.9 740,247 - -0.3 740,247 - +0.7 740,247 - -1.3 740,247 - +0.1 740,247 - -0.9 740,247 - -0.4 740,247 - -0.7 740,247 - -0.9 740,247 - -1.4 740,247 - -1.7 740,247 - -0.9 740,247 - -0.4 740,247 - -1.7 740,247 - -0.6 740,247 - -0.1 740,247 - +1.0 740,247 - +0.4 740,247 - -1.6 740,247 - +0.4 740,247 - +1.0 740,247 - -0.1 740,247 - -0.4 740,247 - -0.6 740,247 - +0.2 740,247 - -4.0 740,446 + -1.9 740,446 + -0.6 740,446 + -1.7 740,446 + +0.9 740,446 + -0.3 740,446 + +0.2 740,446 + -1.4 740,446 + +0.0 740,446 + +1.4 740,446 + -1.6 740,446 + +0.4 740,446 + -0.1 740,446 + -0.0 740,446 + -1.4 740,446 + -0.9 740,447 - +0.4 740,447 - -1.1 740,447 - -0.4 740,447 - -1.9 740,447 - -0.4 740,447 - -0.1 740,447 - -0.1 740,447 - -1.9 740,447 - -1.4 740,447 - -1.2 740,447 - -1.1 740,447 - -0.7 740,447 - -0.4 740,447 - -1.6 740,447 - -0.9 740,447 - -1.0 740,447 - -0.9 740,447 - -0.4 740,447 - -1.3 740,464 - 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MPMX19_00717 0.40 -1.6 740,810 - MPMX19_00717 0.40 -0.1 740,810 - MPMX19_00717 0.40 -1.1 740,810 - MPMX19_00717 0.40 -0.6 740,899 + MPMX19_00717 0.51 +0.4 740,899 + MPMX19_00717 0.51 -0.9 740,900 - MPMX19_00717 0.51 -0.4 740,900 - MPMX19_00717 0.51 -0.9 740,900 - MPMX19_00717 0.51 -1.1 741,217 + MPMX19_00717 0.90 +0.1 741,217 + MPMX19_00717 0.90 +0.0 741,217 + MPMX19_00717 0.90 -0.1 741,217 + MPMX19_00717 0.90 -0.9 741,218 - -0.9 741,218 - -1.9 741,218 - -0.1
Or see this region's nucleotide sequence