Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00627 and MPMX19_00628 are separated by 5 nucleotides MPMX19_00628 and MPMX19_00629 are separated by 19 nucleotides MPMX19_00629 and MPMX19_00630 are separated by 156 nucleotides MPMX19_00630 and MPMX19_00631 are separated by 171 nucleotides
MPMX19_00627: MPMX19_00627 - hypothetical protein, at 644,966 to 646,153
_00627
MPMX19_00628: MPMX19_00628 - hypothetical protein, at 646,159 to 646,611
_00628
MPMX19_00629: MPMX19_00629 - hypothetical protein, at 646,631 to 646,771
_00629
MPMX19_00630: MPMX19_00630 - hypothetical protein, at 646,928 to 648,427
_00630
MPMX19_00631: MPMX19_00631 - putative MFS-type transporter, at 648,599 to 649,861
_00631
Position (kb) 646
647
648
649 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 645.992 kb on - strand, within MPMX19_00627 at 646.128 kb on + strand at 646.128 kb on + strand at 646.128 kb on + strand at 646.128 kb on + strand at 646.128 kb on + strand at 646.128 kb on + strand at 646.128 kb on + strand at 646.128 kb on + strand at 646.129 kb on - strand at 646.129 kb on - strand at 646.129 kb on - strand at 646.129 kb on - strand at 646.129 kb on - strand at 646.129 kb on - strand at 646.129 kb on - strand at 646.129 kb on - strand at 646.647 kb on + strand, within MPMX19_00629 at 646.647 kb on + strand, within MPMX19_00629 at 646.647 kb on + strand, within MPMX19_00629 at 646.647 kb on + strand, within MPMX19_00629 at 646.647 kb on + strand, within MPMX19_00629 at 646.647 kb on + strand, within MPMX19_00629 at 646.647 kb on + strand, within MPMX19_00629 at 646.647 kb on + strand, within MPMX19_00629 at 646.647 kb on + strand, within MPMX19_00629 at 646.647 kb on + strand, within MPMX19_00629 at 646.648 kb on - strand, within MPMX19_00629 at 646.648 kb on - strand, within MPMX19_00629 at 646.648 kb on - strand, within MPMX19_00629 at 646.648 kb on - strand, within MPMX19_00629 at 646.648 kb on - strand, within MPMX19_00629 at 646.648 kb on - strand, within MPMX19_00629 at 646.648 kb on - strand, within MPMX19_00629 at 646.648 kb on - strand, within MPMX19_00629 at 646.648 kb on - strand, within MPMX19_00629 at 646.648 kb on - strand, within MPMX19_00629 at 646.648 kb on - strand, within MPMX19_00629 at 646.648 kb on - strand, within MPMX19_00629 at 646.734 kb on + strand, within MPMX19_00629 at 646.734 kb on + strand, within MPMX19_00629 at 646.734 kb on + strand, within MPMX19_00629 at 646.734 kb on + strand, within MPMX19_00629 at 646.734 kb on + strand, within MPMX19_00629 at 646.734 kb on + strand, within MPMX19_00629 at 646.734 kb on + strand, within MPMX19_00629 at 646.734 kb on + strand, within MPMX19_00629 at 646.734 kb on + strand, within MPMX19_00629 at 646.734 kb on + strand, within MPMX19_00629 at 646.734 kb on + strand, within MPMX19_00629 at 646.735 kb on - strand, within MPMX19_00629 at 646.735 kb on - strand, within MPMX19_00629 at 646.735 kb on - strand, within MPMX19_00629 at 646.735 kb on - strand, within MPMX19_00629 at 646.735 kb on - strand, within MPMX19_00629 at 646.735 kb on - strand, within MPMX19_00629 at 646.735 kb on - strand, within MPMX19_00629 at 646.735 kb on - strand, within MPMX19_00629 at 646.735 kb on - strand, within MPMX19_00629 at 646.735 kb on - strand, within MPMX19_00629 at 646.735 kb on - strand, within MPMX19_00629 at 646.735 kb on - strand, within MPMX19_00629 at 646.735 kb on - strand, within MPMX19_00629 at 646.735 kb on - strand, within MPMX19_00629 at 646.735 kb on - strand, within MPMX19_00629 at 646.992 kb on + strand at 647.121 kb on + strand, within MPMX19_00630 at 647.121 kb on + strand, within MPMX19_00630 at 647.122 kb on - strand, within MPMX19_00630 at 647.122 kb on - strand, within MPMX19_00630 at 647.122 kb on - strand, within MPMX19_00630 at 647.122 kb on - strand, within MPMX19_00630 at 647.472 kb on + strand, within MPMX19_00630 at 647.472 kb on + strand, within MPMX19_00630 at 647.472 kb on + strand, within MPMX19_00630 at 647.472 kb on + strand, within MPMX19_00630 at 647.472 kb on + strand, within MPMX19_00630 at 647.472 kb on + strand, within MPMX19_00630 at 647.472 kb on + strand, within MPMX19_00630 at 647.473 kb on - strand, within MPMX19_00630 at 647.473 kb on - strand, within MPMX19_00630 at 647.473 kb on - strand, within MPMX19_00630 at 647.473 kb on - strand, within MPMX19_00630 at 647.473 kb on - strand, within MPMX19_00630 at 647.473 kb on - strand, within MPMX19_00630 at 647.538 kb on + strand, within MPMX19_00630 at 647.538 kb on + strand, within MPMX19_00630 at 647.538 kb on + strand, within MPMX19_00630 at 647.538 kb on + strand, within MPMX19_00630 at 647.538 kb on + strand, within MPMX19_00630 at 647.538 kb on + strand, within MPMX19_00630 at 647.538 kb on + strand, within MPMX19_00630 at 647.538 kb on + strand, within MPMX19_00630 at 647.538 kb on + strand, within MPMX19_00630 at 647.539 kb on - strand, within MPMX19_00630 at 647.539 kb on - strand, within MPMX19_00630 at 647.539 kb on - strand, within MPMX19_00630 at 647.539 kb on - strand, within MPMX19_00630 at 647.539 kb on - strand, within MPMX19_00630 at 647.757 kb on + strand, within MPMX19_00630 at 647.757 kb on + strand, within MPMX19_00630 at 647.757 kb on + strand, within MPMX19_00630 at 647.757 kb on + strand, within MPMX19_00630 at 647.757 kb on + strand, within MPMX19_00630 at 647.757 kb on + strand, within MPMX19_00630 at 647.757 kb on + strand, within MPMX19_00630 at 647.757 kb on + strand, within MPMX19_00630 at 647.757 kb on + strand, within MPMX19_00630 at 647.757 kb on + strand, within MPMX19_00630 at 647.758 kb on - strand, within MPMX19_00630 at 647.758 kb on - strand, within MPMX19_00630 at 647.758 kb on - strand, within MPMX19_00630 at 647.758 kb on - strand, within MPMX19_00630 at 647.758 kb on - strand, within MPMX19_00630 at 647.758 kb on - strand, within MPMX19_00630 at 647.758 kb on - strand, within MPMX19_00630 at 647.758 kb on - strand, within MPMX19_00630 at 647.758 kb on - strand, within MPMX19_00630 at 647.758 kb on - strand, within MPMX19_00630 at 648.453 kb on + strand at 648.453 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.671 kb on + strand at 648.672 kb on - strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.800 kb on + strand, within MPMX19_00631 at 648.800 kb on + strand, within MPMX19_00631 at 648.801 kb on - strand, within MPMX19_00631 at 648.801 kb on - strand, within MPMX19_00631 at 648.801 kb on - strand, within MPMX19_00631 at 648.801 kb on - strand, within MPMX19_00631 at 648.801 kb on - strand, within MPMX19_00631 at 648.813 kb on + strand, within MPMX19_00631 at 649.058 kb on + strand, within MPMX19_00631 at 649.058 kb on + strand, within MPMX19_00631 at 649.058 kb on + strand, within MPMX19_00631 at 649.058 kb on + strand, within MPMX19_00631 at 649.058 kb on + strand, within MPMX19_00631 at 649.058 kb on + strand, within MPMX19_00631 at 649.058 kb on + strand, within MPMX19_00631 at 649.058 kb on + strand, within MPMX19_00631 at 649.058 kb on + strand, within MPMX19_00631 at 649.059 kb on - strand, within MPMX19_00631 at 649.059 kb on - strand, within MPMX19_00631 at 649.059 kb on - strand, within MPMX19_00631
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 645,992 - MPMX19_00627 0.86 -1.8 646,128 + +0.6 646,128 + -1.4 646,128 + -1.7 646,128 + -1.1 646,128 + +0.9 646,128 + +0.1 646,128 + +0.5 646,128 + -0.1 646,129 - -2.6 646,129 - -0.9 646,129 - -0.4 646,129 - -0.5 646,129 - -2.0 646,129 - -0.1 646,129 - -1.1 646,129 - -0.5 646,647 + MPMX19_00629 0.11 -0.6 646,647 + MPMX19_00629 0.11 +0.2 646,647 + MPMX19_00629 0.11 -0.5 646,647 + MPMX19_00629 0.11 +0.1 646,647 + MPMX19_00629 0.11 -0.5 646,647 + MPMX19_00629 0.11 +0.5 646,647 + MPMX19_00629 0.11 -0.1 646,647 + MPMX19_00629 0.11 -2.1 646,647 + MPMX19_00629 0.11 +0.5 646,647 + MPMX19_00629 0.11 -0.7 646,648 - MPMX19_00629 0.12 +0.9 646,648 - MPMX19_00629 0.12 -0.7 646,648 - MPMX19_00629 0.12 -0.8 646,648 - MPMX19_00629 0.12 +2.2 646,648 - MPMX19_00629 0.12 -1.7 646,648 - MPMX19_00629 0.12 -1.3 646,648 - MPMX19_00629 0.12 +1.5 646,648 - MPMX19_00629 0.12 -0.8 646,648 - MPMX19_00629 0.12 +1.1 646,648 - MPMX19_00629 0.12 +0.3 646,648 - MPMX19_00629 0.12 -0.5 646,648 - MPMX19_00629 0.12 -0.5 646,734 + MPMX19_00629 0.73 +0.1 646,734 + MPMX19_00629 0.73 -0.9 646,734 + MPMX19_00629 0.73 -1.1 646,734 + MPMX19_00629 0.73 +1.1 646,734 + MPMX19_00629 0.73 -2.8 646,734 + MPMX19_00629 0.73 -0.9 646,734 + MPMX19_00629 0.73 -0.9 646,734 + MPMX19_00629 0.73 +0.6 646,734 + MPMX19_00629 0.73 -0.1 646,734 + MPMX19_00629 0.73 -0.1 646,734 + MPMX19_00629 0.73 -0.2 646,735 - MPMX19_00629 0.74 -0.1 646,735 - MPMX19_00629 0.74 -1.9 646,735 - MPMX19_00629 0.74 +0.5 646,735 - MPMX19_00629 0.74 -0.5 646,735 - MPMX19_00629 0.74 +0.8 646,735 - MPMX19_00629 0.74 +0.7 646,735 - MPMX19_00629 0.74 -2.6 646,735 - MPMX19_00629 0.74 +0.5 646,735 - MPMX19_00629 0.74 +2.1 646,735 - MPMX19_00629 0.74 -0.5 646,735 - MPMX19_00629 0.74 +0.1 646,735 - MPMX19_00629 0.74 -0.5 646,735 - MPMX19_00629 0.74 -0.3 646,735 - MPMX19_00629 0.74 +0.2 646,735 - MPMX19_00629 0.74 -0.9 646,992 + -1.9 647,121 + MPMX19_00630 0.13 -1.9 647,121 + MPMX19_00630 0.13 -0.9 647,122 - MPMX19_00630 0.13 -1.7 647,122 - MPMX19_00630 0.13 +1.1 647,122 - MPMX19_00630 0.13 -0.1 647,122 - MPMX19_00630 0.13 -1.1 647,472 + MPMX19_00630 0.36 +0.1 647,472 + MPMX19_00630 0.36 +0.2 647,472 + MPMX19_00630 0.36 +0.9 647,472 + MPMX19_00630 0.36 +0.1 647,472 + MPMX19_00630 0.36 -0.9 647,472 + MPMX19_00630 0.36 -1.1 647,472 + MPMX19_00630 0.36 -0.3 647,473 - MPMX19_00630 0.36 -0.9 647,473 - MPMX19_00630 0.36 +0.1 647,473 - MPMX19_00630 0.36 +0.5 647,473 - MPMX19_00630 0.36 +0.5 647,473 - MPMX19_00630 0.36 +1.5 647,473 - MPMX19_00630 0.36 -0.5 647,538 + MPMX19_00630 0.41 -0.6 647,538 + MPMX19_00630 0.41 -1.5 647,538 + MPMX19_00630 0.41 -1.7 647,538 + MPMX19_00630 0.41 +0.7 647,538 + MPMX19_00630 0.41 +1.0 647,538 + MPMX19_00630 0.41 -0.9 647,538 + MPMX19_00630 0.41 +1.1 647,538 + MPMX19_00630 0.41 -0.5 647,538 + MPMX19_00630 0.41 -2.3 647,539 - MPMX19_00630 0.41 -0.3 647,539 - MPMX19_00630 0.41 -1.9 647,539 - MPMX19_00630 0.41 -0.1 647,539 - MPMX19_00630 0.41 -0.2 647,539 - MPMX19_00630 0.41 +0.2 647,757 + MPMX19_00630 0.55 +0.1 647,757 + MPMX19_00630 0.55 -1.6 647,757 + MPMX19_00630 0.55 +0.1 647,757 + MPMX19_00630 0.55 +0.1 647,757 + MPMX19_00630 0.55 -1.1 647,757 + MPMX19_00630 0.55 +0.3 647,757 + MPMX19_00630 0.55 -0.3 647,757 + MPMX19_00630 0.55 +1.5 647,757 + MPMX19_00630 0.55 -0.5 647,757 + MPMX19_00630 0.55 -1.3 647,758 - MPMX19_00630 0.55 -0.1 647,758 - MPMX19_00630 0.55 +0.9 647,758 - MPMX19_00630 0.55 -0.7 647,758 - MPMX19_00630 0.55 -1.3 647,758 - MPMX19_00630 0.55 -0.1 647,758 - MPMX19_00630 0.55 -0.9 647,758 - MPMX19_00630 0.55 -0.4 647,758 - MPMX19_00630 0.55 -0.1 647,758 - MPMX19_00630 0.55 -0.5 647,758 - MPMX19_00630 0.55 +0.2 648,453 + -0.9 648,453 + -1.0 648,596 + +0.1 648,596 + -1.3 648,596 + +1.0 648,596 + +1.0 648,596 + -0.4 648,596 + -2.1 648,596 + -1.5 648,596 + +2.5 648,596 + -1.1 648,596 + -2.0 648,596 + -1.3 648,596 + -1.3 648,596 + -0.1 648,596 + -1.1 648,596 + -0.0 648,596 + +1.1 648,596 + +0.5 648,596 + +1.1 648,596 + -2.3 648,596 + -0.3 648,596 + -1.7 648,596 + -1.1 648,596 + -2.4 648,596 + -1.3 648,597 - -1.0 648,597 - -0.8 648,597 - +0.2 648,597 - -0.9 648,597 - -1.9 648,597 - -0.1 648,597 - -0.6 648,597 - -0.7 648,597 - -2.2 648,597 - -0.5 648,597 - -0.9 648,597 - -0.1 648,597 - +1.5 648,597 - +1.5 648,597 - -0.1 648,597 - +0.1 648,671 + -0.9 648,672 - +0.5 648,683 + +0.5 648,683 + +0.5 648,683 + -0.3 648,683 + +1.5 648,683 + +0.5 648,683 + +0.5 648,683 + -1.3 648,683 + -2.2 648,683 + -1.3 648,683 + -0.7 648,683 + -1.3 648,683 + -0.1 648,684 - +0.5 648,684 - -0.5 648,684 - -0.9 648,684 - -1.3 648,684 - +0.1 648,684 - -0.2 648,684 - -0.2 648,684 - -1.4 648,684 - -0.5 648,684 - -0.5 648,684 - -2.1 648,684 - -0.1 648,684 - -0.3 648,684 - -0.5 648,684 - -2.7 648,800 + MPMX19_00631 0.16 -0.5 648,800 + MPMX19_00631 0.16 +0.5 648,801 - MPMX19_00631 0.16 -2.0 648,801 - MPMX19_00631 0.16 +0.8 648,801 - MPMX19_00631 0.16 +1.9 648,801 - MPMX19_00631 0.16 -0.9 648,801 - MPMX19_00631 0.16 -0.3 648,813 + MPMX19_00631 0.17 +0.1 649,058 + MPMX19_00631 0.36 -0.7 649,058 + MPMX19_00631 0.36 -0.3 649,058 + MPMX19_00631 0.36 -0.5 649,058 + MPMX19_00631 0.36 -2.1 649,058 + MPMX19_00631 0.36 -1.9 649,058 + MPMX19_00631 0.36 +1.1 649,058 + MPMX19_00631 0.36 -0.1 649,058 + MPMX19_00631 0.36 -1.3 649,058 + MPMX19_00631 0.36 -1.1 649,059 - MPMX19_00631 0.36 -1.1 649,059 - MPMX19_00631 0.36 -1.1 649,059 - MPMX19_00631 0.36 -0.9
Or see this region's nucleotide sequence