Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00525 and MPMX19_00526 are separated by 376 nucleotides MPMX19_00526 and MPMX19_00527 are separated by 31 nucleotides MPMX19_00527 and MPMX19_00528 are separated by 67 nucleotides
MPMX19_00525: MPMX19_00525 - Isoleucine--tRNA ligase, at 532,838 to 535,681
_00525
MPMX19_00526: MPMX19_00526 - hypothetical protein, at 536,058 to 537,035
_00526
MPMX19_00527: MPMX19_00527 - hypothetical protein, at 537,067 to 537,789
_00527
MPMX19_00528: MPMX19_00528 - Beta-barrel assembly-enhancing protease, at 537,857 to 540,502
_00528
Position (kb) 536
537
538 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 535.706 kb on - strand at 535.706 kb on - strand at 535.706 kb on - strand at 535.781 kb on - strand at 535.781 kb on - strand at 535.854 kb on - strand at 535.854 kb on - strand at 535.854 kb on - strand at 535.984 kb on + strand at 535.984 kb on + strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.986 kb on - strand at 536.454 kb on + strand, within MPMX19_00526 at 536.454 kb on + strand, within MPMX19_00526 at 536.454 kb on + strand, within MPMX19_00526 at 536.454 kb on + strand, within MPMX19_00526 at 536.454 kb on + strand, within MPMX19_00526 at 536.454 kb on + strand, within MPMX19_00526 at 536.454 kb on + strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.499 kb on + strand, within MPMX19_00526 at 536.499 kb on + strand, within MPMX19_00526 at 536.500 kb on - strand, within MPMX19_00526 at 536.500 kb on - strand, within MPMX19_00526 at 536.500 kb on - strand, within MPMX19_00526 at 536.500 kb on - strand, within MPMX19_00526 at 536.500 kb on - strand, within MPMX19_00526 at 536.500 kb on - strand, within MPMX19_00526 at 536.577 kb on + strand, within MPMX19_00526 at 536.577 kb on + strand, within MPMX19_00526 at 536.577 kb on + strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.767 kb on - strand, within MPMX19_00526 at 536.767 kb on - strand, within MPMX19_00526 at 536.767 kb on - strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.818 kb on - strand, within MPMX19_00526 at 536.818 kb on - strand, within MPMX19_00526 at 536.818 kb on - strand, within MPMX19_00526 at 536.818 kb on - strand, within MPMX19_00526 at 536.818 kb on - strand, within MPMX19_00526 at 536.818 kb on - strand, within MPMX19_00526 at 536.818 kb on - strand, within MPMX19_00526 at 536.818 kb on - strand, within MPMX19_00526 at 536.818 kb on - strand, within MPMX19_00526 at 536.818 kb on - strand, within MPMX19_00526 at 536.880 kb on + strand, within MPMX19_00526 at 536.881 kb on - strand, within MPMX19_00526 at 536.881 kb on - strand, within MPMX19_00526 at 536.881 kb on - strand, within MPMX19_00526 at 536.881 kb on - strand, within MPMX19_00526 at 536.881 kb on - strand, within MPMX19_00526 at 536.931 kb on + strand, within MPMX19_00526 at 536.931 kb on + strand, within MPMX19_00526 at 536.931 kb on + strand, within MPMX19_00526 at 536.932 kb on - strand, within MPMX19_00526 at 536.932 kb on - strand, within MPMX19_00526 at 536.932 kb on - strand, within MPMX19_00526 at 536.932 kb on - strand, within MPMX19_00526 at 536.932 kb on - strand, within MPMX19_00526 at 536.932 kb on - strand, within MPMX19_00526 at 536.941 kb on - strand at 536.949 kb on + strand at 537.000 kb on + strand at 537.000 kb on + strand at 537.001 kb on - strand at 537.001 kb on - strand at 537.001 kb on - strand at 537.088 kb on + strand at 537.088 kb on + strand at 537.088 kb on + strand at 537.088 kb on + strand at 537.088 kb on + strand at 537.088 kb on + strand at 537.088 kb on + strand at 537.088 kb on + strand at 537.088 kb on + strand at 537.088 kb on + strand at 537.089 kb on - strand at 537.089 kb on - strand at 537.089 kb on - strand at 537.089 kb on - strand at 537.089 kb on - strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.247 kb on + strand, within MPMX19_00527 at 537.247 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.319 kb on + strand, within MPMX19_00527 at 537.319 kb on + strand, within MPMX19_00527 at 537.319 kb on + strand, within MPMX19_00527 at 537.320 kb on - strand, within MPMX19_00527 at 537.320 kb on - strand, within MPMX19_00527 at 537.320 kb on - strand, within MPMX19_00527 at 537.320 kb on - strand, within MPMX19_00527 at 537.631 kb on + strand, within MPMX19_00527 at 537.631 kb on + strand, within MPMX19_00527 at 537.631 kb on + strand, within MPMX19_00527 at 537.631 kb on + strand, within MPMX19_00527 at 537.632 kb on - strand, within MPMX19_00527 at 537.632 kb on - strand, within MPMX19_00527 at 537.787 kb on + strand at 537.787 kb on + strand at 537.788 kb on - strand at 537.923 kb on + strand at 537.923 kb on + strand at 537.923 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 535,706 - -2.1 535,706 - +0.7 535,706 - -0.6 535,781 - +0.2 535,781 - +0.4 535,854 - -0.9 535,854 - -1.2 535,854 - -1.2 535,984 + -1.4 535,984 + -0.4 535,985 - -2.0 535,985 - -1.1 535,985 - -2.8 535,985 - -1.6 535,985 - -0.7 535,985 - +0.1 535,985 - -0.7 535,985 - -0.6 535,985 - -1.8 535,986 - -1.4 536,454 + MPMX19_00526 0.40 -1.4 536,454 + MPMX19_00526 0.40 -1.9 536,454 + MPMX19_00526 0.40 -1.2 536,454 + MPMX19_00526 0.40 -1.2 536,454 + MPMX19_00526 0.40 +1.0 536,454 + MPMX19_00526 0.40 -1.8 536,454 + MPMX19_00526 0.40 -0.2 536,455 - MPMX19_00526 0.41 -0.2 536,455 - MPMX19_00526 0.41 -1.4 536,455 - MPMX19_00526 0.41 +0.2 536,455 - MPMX19_00526 0.41 -0.8 536,455 - MPMX19_00526 0.41 +0.7 536,455 - MPMX19_00526 0.41 -1.8 536,455 - MPMX19_00526 0.41 -0.6 536,455 - MPMX19_00526 0.41 -1.6 536,455 - MPMX19_00526 0.41 +0.4 536,469 + MPMX19_00526 0.42 -0.4 536,469 + MPMX19_00526 0.42 -1.3 536,469 + MPMX19_00526 0.42 -0.9 536,469 + MPMX19_00526 0.42 -0.6 536,469 + MPMX19_00526 0.42 -1.4 536,469 + MPMX19_00526 0.42 -1.2 536,469 + MPMX19_00526 0.42 -0.9 536,469 + MPMX19_00526 0.42 -0.6 536,469 + MPMX19_00526 0.42 +0.7 536,469 + MPMX19_00526 0.42 -0.6 536,469 + MPMX19_00526 0.42 -1.0 536,469 + MPMX19_00526 0.42 -3.3 536,469 + MPMX19_00526 0.42 +0.2 536,469 + MPMX19_00526 0.42 -1.6 536,469 + MPMX19_00526 0.42 -0.6 536,470 - MPMX19_00526 0.42 +0.8 536,470 - MPMX19_00526 0.42 +0.4 536,470 - MPMX19_00526 0.42 -0.9 536,470 - MPMX19_00526 0.42 -0.2 536,470 - MPMX19_00526 0.42 -0.3 536,470 - MPMX19_00526 0.42 -1.2 536,470 - MPMX19_00526 0.42 -0.4 536,470 - MPMX19_00526 0.42 -0.6 536,470 - MPMX19_00526 0.42 -1.2 536,470 - MPMX19_00526 0.42 -0.1 536,470 - MPMX19_00526 0.42 -0.8 536,470 - MPMX19_00526 0.42 -0.9 536,470 - MPMX19_00526 0.42 -0.4 536,499 + MPMX19_00526 0.45 -1.2 536,499 + MPMX19_00526 0.45 -1.4 536,500 - MPMX19_00526 0.45 -1.3 536,500 - MPMX19_00526 0.45 -1.4 536,500 - MPMX19_00526 0.45 +0.2 536,500 - MPMX19_00526 0.45 +1.4 536,500 - MPMX19_00526 0.45 -1.4 536,500 - MPMX19_00526 0.45 -0.2 536,577 + MPMX19_00526 0.53 -0.9 536,577 + MPMX19_00526 0.53 +0.1 536,577 + MPMX19_00526 0.53 +0.2 536,578 - MPMX19_00526 0.53 -0.9 536,578 - MPMX19_00526 0.53 -0.9 536,578 - MPMX19_00526 0.53 -0.8 536,578 - MPMX19_00526 0.53 +3.0 536,578 - MPMX19_00526 0.53 -0.2 536,578 - MPMX19_00526 0.53 -0.8 536,578 - MPMX19_00526 0.53 -0.8 536,578 - MPMX19_00526 0.53 -0.4 536,767 - MPMX19_00526 0.72 +1.4 536,767 - MPMX19_00526 0.72 -0.9 536,767 - MPMX19_00526 0.72 -0.2 536,817 + MPMX19_00526 0.78 -1.2 536,817 + MPMX19_00526 0.78 -0.4 536,817 + MPMX19_00526 0.78 -0.2 536,817 + MPMX19_00526 0.78 -0.6 536,817 + MPMX19_00526 0.78 +1.4 536,817 + MPMX19_00526 0.78 -2.3 536,817 + MPMX19_00526 0.78 +0.2 536,817 + MPMX19_00526 0.78 -1.8 536,817 + MPMX19_00526 0.78 -1.8 536,817 + MPMX19_00526 0.78 +0.6 536,817 + MPMX19_00526 0.78 -0.2 536,817 + MPMX19_00526 0.78 -1.6 536,818 - MPMX19_00526 0.78 +0.4 536,818 - MPMX19_00526 0.78 -1.4 536,818 - MPMX19_00526 0.78 -0.5 536,818 - MPMX19_00526 0.78 -1.8 536,818 - MPMX19_00526 0.78 -0.2 536,818 - MPMX19_00526 0.78 +1.4 536,818 - MPMX19_00526 0.78 +0.6 536,818 - MPMX19_00526 0.78 -1.4 536,818 - MPMX19_00526 0.78 -1.9 536,818 - MPMX19_00526 0.78 +0.1 536,880 + MPMX19_00526 0.84 -0.4 536,881 - MPMX19_00526 0.84 +0.4 536,881 - MPMX19_00526 0.84 -1.1 536,881 - MPMX19_00526 0.84 -0.8 536,881 - MPMX19_00526 0.84 -0.6 536,881 - MPMX19_00526 0.84 -0.4 536,931 + MPMX19_00526 0.89 -2.1 536,931 + MPMX19_00526 0.89 -0.1 536,931 + MPMX19_00526 0.89 -0.2 536,932 - MPMX19_00526 0.89 -0.1 536,932 - MPMX19_00526 0.89 -0.2 536,932 - MPMX19_00526 0.89 +0.4 536,932 - MPMX19_00526 0.89 -1.3 536,932 - MPMX19_00526 0.89 +1.0 536,932 - MPMX19_00526 0.89 -0.4 536,941 - +0.1 536,949 + -2.4 537,000 + +0.4 537,000 + -0.0 537,001 - -0.4 537,001 - -0.6 537,001 - -0.6 537,088 + -2.1 537,088 + -0.6 537,088 + -0.6 537,088 + -1.8 537,088 + -0.8 537,088 + -1.3 537,088 + +0.8 537,088 + -1.8 537,088 + -0.4 537,088 + -0.2 537,089 - -2.1 537,089 - -0.9 537,089 - +1.4 537,089 - +1.4 537,089 - -0.2 537,121 + -0.9 537,121 + -2.3 537,121 + -0.4 537,121 + -0.6 537,121 + -0.9 537,121 + -1.0 537,121 + +0.9 537,121 + -0.3 537,121 + -1.8 537,121 + -0.2 537,121 + -0.3 537,121 + -0.1 537,121 + -1.2 537,121 + -0.9 537,121 + -0.6 537,121 + -1.4 537,122 - -0.3 537,122 - -1.6 537,122 - +0.1 537,122 - +0.8 537,122 - +1.7 537,122 - -1.4 537,122 - -1.7 537,122 - -0.4 537,122 - +2.0 537,122 - -0.4 537,122 - -0.2 537,122 - +0.1 537,122 - +1.1 537,122 - -0.4 537,122 - +0.3 537,122 - -0.2 537,122 - +0.6 537,122 - +0.1 537,247 + MPMX19_00527 0.25 -0.6 537,247 + MPMX19_00527 0.25 -1.8 537,265 + MPMX19_00527 0.27 +0.8 537,265 + MPMX19_00527 0.27 -2.3 537,265 + MPMX19_00527 0.27 +0.5 537,265 + MPMX19_00527 0.27 +0.5 537,265 + MPMX19_00527 0.27 -0.8 537,265 + MPMX19_00527 0.27 -0.2 537,265 + MPMX19_00527 0.27 +1.4 537,265 + MPMX19_00527 0.27 -0.9 537,265 + MPMX19_00527 0.27 -0.9 537,265 + MPMX19_00527 0.27 -0.2 537,265 + MPMX19_00527 0.27 +0.1 537,265 + MPMX19_00527 0.27 -1.4 537,265 + MPMX19_00527 0.27 +0.1 537,265 + MPMX19_00527 0.27 -1.6 537,266 - MPMX19_00527 0.28 +0.2 537,266 - MPMX19_00527 0.28 -0.5 537,266 - MPMX19_00527 0.28 +1.0 537,266 - MPMX19_00527 0.28 -1.7 537,266 - MPMX19_00527 0.28 -0.6 537,266 - MPMX19_00527 0.28 -0.4 537,266 - MPMX19_00527 0.28 -0.2 537,266 - MPMX19_00527 0.28 -0.9 537,266 - MPMX19_00527 0.28 +0.0 537,266 - MPMX19_00527 0.28 +0.4 537,266 - MPMX19_00527 0.28 +0.7 537,319 + MPMX19_00527 0.35 -1.2 537,319 + MPMX19_00527 0.35 -3.2 537,319 + MPMX19_00527 0.35 -0.5 537,320 - MPMX19_00527 0.35 -0.2 537,320 - MPMX19_00527 0.35 +0.6 537,320 - MPMX19_00527 0.35 +1.4 537,320 - MPMX19_00527 0.35 -1.4 537,631 + MPMX19_00527 0.78 -0.2 537,631 + MPMX19_00527 0.78 -0.0 537,631 + MPMX19_00527 0.78 +0.8 537,631 + MPMX19_00527 0.78 +0.6 537,632 - MPMX19_00527 0.78 -0.6 537,632 - MPMX19_00527 0.78 -1.2 537,787 + -0.0 537,787 + -0.5 537,788 - -0.6 537,923 + -0.9 537,923 + +2.4 537,923 + -2.8
Or see this region's nucleotide sequence