Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00489 and MPMX19_00490 are separated by 58 nucleotides MPMX19_00490 and MPMX19_00491 are separated by 19 nucleotides MPMX19_00491 and MPMX19_00492 are separated by 119 nucleotides
MPMX19_00489: MPMX19_00489 - hypothetical protein, at 489,828 to 490,760
_00489
MPMX19_00490: MPMX19_00490 - hypothetical protein, at 490,819 to 491,505
_00490
MPMX19_00491: MPMX19_00491 - hypothetical protein, at 491,525 to 492,484
_00491
MPMX19_00492: MPMX19_00492 - Cobalamin biosynthesis protein CbiB, at 492,604 to 493,587
_00492
Position (kb) 491
492
493 Strain fitness (log2 ratio) -2
-1
0
1
2 at 490.583 kb on + strand, within MPMX19_00489 at 490.583 kb on + strand, within MPMX19_00489 at 490.583 kb on + strand, within MPMX19_00489 at 490.583 kb on + strand, within MPMX19_00489 at 490.584 kb on - strand, within MPMX19_00489 at 490.584 kb on - strand, within MPMX19_00489 at 490.584 kb on - strand, within MPMX19_00489 at 490.584 kb on - strand, within MPMX19_00489 at 490.584 kb on - strand, within MPMX19_00489 at 490.656 kb on + strand, within MPMX19_00489 at 490.656 kb on + strand, within MPMX19_00489 at 490.656 kb on + strand, within MPMX19_00489 at 490.656 kb on + strand, within MPMX19_00489 at 490.657 kb on - strand, within MPMX19_00489 at 490.657 kb on - strand, within MPMX19_00489 at 490.657 kb on - strand, within MPMX19_00489 at 490.657 kb on - strand, within MPMX19_00489 at 490.720 kb on + strand at 490.720 kb on + strand at 490.720 kb on + strand at 490.720 kb on + strand at 490.720 kb on + strand at 490.720 kb on + strand at 490.720 kb on + strand at 490.720 kb on + strand at 490.720 kb on + strand at 490.720 kb on + strand at 490.720 kb on + strand at 490.720 kb on + strand at 490.720 kb on + strand at 490.720 kb on + strand at 490.720 kb on + strand at 490.720 kb on + strand at 490.721 kb on - strand at 490.721 kb on - strand at 490.721 kb on - strand at 490.721 kb on - strand at 490.721 kb on - strand at 491.080 kb on + strand, within MPMX19_00490 at 491.080 kb on + strand, within MPMX19_00490 at 491.080 kb on + strand, within MPMX19_00490 at 491.080 kb on + strand, within MPMX19_00490 at 491.080 kb on + strand, within MPMX19_00490 at 491.080 kb on + strand, within MPMX19_00490 at 491.081 kb on - strand, within MPMX19_00490 at 491.081 kb on - strand, within MPMX19_00490 at 491.081 kb on - strand, within MPMX19_00490 at 491.251 kb on + strand, within MPMX19_00490 at 491.251 kb on + strand, within MPMX19_00490 at 491.251 kb on + strand, within MPMX19_00490 at 491.251 kb on + strand, within MPMX19_00490 at 491.251 kb on + strand, within MPMX19_00490 at 491.251 kb on + strand, within MPMX19_00490 at 491.251 kb on + strand, within MPMX19_00490 at 491.251 kb on + strand, within MPMX19_00490 at 491.251 kb on + strand, within MPMX19_00490 at 491.251 kb on + strand, within MPMX19_00490 at 491.252 kb on - strand, within MPMX19_00490 at 491.252 kb on - strand, within MPMX19_00490 at 491.252 kb on - strand, within MPMX19_00490 at 491.252 kb on - strand, within MPMX19_00490 at 491.252 kb on - strand, within MPMX19_00490 at 491.252 kb on - strand, within MPMX19_00490 at 491.252 kb on - strand, within MPMX19_00490 at 491.252 kb on - strand, within MPMX19_00490 at 491.252 kb on - strand, within MPMX19_00490 at 491.294 kb on + strand, within MPMX19_00490 at 491.294 kb on + strand, within MPMX19_00490 at 491.470 kb on + strand at 491.470 kb on + strand at 491.470 kb on + strand at 491.470 kb on + strand at 491.470 kb on + strand at 491.470 kb on + strand at 491.470 kb on + strand at 491.470 kb on + strand at 491.470 kb on + strand at 491.470 kb on + strand at 491.470 kb on + strand at 491.470 kb on + strand at 491.470 kb on + strand at 491.470 kb on + strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.471 kb on - strand at 491.559 kb on + strand at 491.559 kb on + strand at 491.559 kb on + strand at 491.559 kb on + strand at 491.559 kb on + strand at 491.560 kb on - strand at 491.560 kb on - strand at 491.568 kb on + strand at 491.568 kb on + strand at 491.568 kb on + strand at 491.568 kb on + strand at 491.568 kb on + strand at 491.568 kb on + strand at 491.568 kb on + strand at 491.568 kb on + strand at 491.568 kb on + strand at 491.568 kb on + strand at 491.568 kb on + strand at 491.569 kb on - strand at 491.569 kb on - strand at 491.569 kb on - strand at 491.569 kb on - strand at 491.569 kb on - strand at 491.569 kb on - strand at 491.569 kb on - strand at 491.569 kb on - strand at 491.569 kb on - strand at 491.569 kb on - strand at 491.569 kb on - strand at 491.569 kb on - strand at 491.569 kb on - strand at 491.646 kb on + strand, within MPMX19_00491 at 491.646 kb on + strand, within MPMX19_00491 at 491.646 kb on + strand, within MPMX19_00491 at 491.647 kb on - strand, within MPMX19_00491 at 491.673 kb on + strand, within MPMX19_00491 at 491.674 kb on - strand, within MPMX19_00491 at 491.674 kb on - strand, within MPMX19_00491 at 491.674 kb on - strand, within MPMX19_00491 at 491.674 kb on - strand, within MPMX19_00491 at 491.712 kb on + strand, within MPMX19_00491 at 491.712 kb on + strand, within MPMX19_00491 at 491.712 kb on + strand, within MPMX19_00491 at 491.713 kb on - strand, within MPMX19_00491 at 491.713 kb on - strand, within MPMX19_00491 at 491.713 kb on - strand, within MPMX19_00491 at 491.713 kb on - strand, within MPMX19_00491 at 491.713 kb on - strand, within MPMX19_00491 at 491.850 kb on + strand, within MPMX19_00491 at 491.850 kb on + strand, within MPMX19_00491 at 491.850 kb on + strand, within MPMX19_00491 at 491.850 kb on + strand, within MPMX19_00491 at 491.850 kb on + strand, within MPMX19_00491 at 491.851 kb on - strand, within MPMX19_00491 at 491.851 kb on - strand, within MPMX19_00491 at 491.851 kb on - strand, within MPMX19_00491 at 491.851 kb on - strand, within MPMX19_00491 at 491.851 kb on - strand, within MPMX19_00491 at 491.851 kb on - strand, within MPMX19_00491 at 491.907 kb on + strand, within MPMX19_00491 at 491.907 kb on + strand, within MPMX19_00491 at 491.907 kb on + strand, within MPMX19_00491 at 491.907 kb on + strand, within MPMX19_00491 at 491.908 kb on - strand, within MPMX19_00491 at 491.908 kb on - strand, within MPMX19_00491 at 491.908 kb on - strand, within MPMX19_00491 at 491.908 kb on - strand, within MPMX19_00491 at 491.908 kb on - strand, within MPMX19_00491 at 491.908 kb on - strand, within MPMX19_00491 at 491.908 kb on - strand, within MPMX19_00491 at 491.908 kb on - strand, within MPMX19_00491 at 491.908 kb on - strand, within MPMX19_00491 at 491.908 kb on - strand, within MPMX19_00491 at 492.294 kb on + strand, within MPMX19_00491 at 492.294 kb on + strand, within MPMX19_00491 at 492.294 kb on + strand, within MPMX19_00491 at 492.295 kb on - strand, within MPMX19_00491 at 492.295 kb on - strand, within MPMX19_00491 at 492.295 kb on - strand, within MPMX19_00491 at 492.295 kb on - strand, within MPMX19_00491 at 492.295 kb on - strand, within MPMX19_00491 at 492.295 kb on - strand, within MPMX19_00491 at 492.415 kb on + strand at 492.415 kb on + strand at 492.415 kb on + strand at 492.415 kb on + strand at 492.415 kb on + strand at 492.415 kb on + strand at 492.416 kb on - strand at 492.416 kb on - strand at 492.416 kb on - strand at 492.416 kb on - strand at 492.478 kb on + strand at 492.510 kb on + strand at 492.510 kb on + strand at 492.510 kb on + strand at 492.511 kb on - strand at 492.511 kb on - strand at 492.511 kb on - strand at 492.511 kb on - strand at 492.513 kb on + strand at 492.513 kb on + strand at 492.513 kb on + strand at 492.513 kb on + strand at 492.513 kb on + strand at 492.513 kb on + strand at 492.513 kb on + strand at 492.513 kb on + strand at 492.513 kb on + strand at 492.513 kb on + strand at 492.513 kb on + strand at 492.513 kb on + strand at 492.513 kb on + strand at 492.513 kb on + strand at 492.513 kb on + strand at 492.513 kb on + strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.514 kb on - strand at 492.516 kb on + strand at 492.516 kb on + strand at 492.516 kb on + strand at 492.516 kb on + strand at 492.516 kb on + strand at 492.516 kb on + strand at 492.516 kb on + strand at 492.516 kb on + strand at 492.516 kb on + strand at 492.516 kb on + strand at 492.516 kb on + strand at 492.516 kb on + strand at 492.516 kb on + strand at 492.516 kb on + strand at 492.516 kb on + strand at 492.516 kb on + strand at 492.517 kb on - strand at 492.517 kb on - strand at 492.517 kb on - strand at 492.517 kb on - strand at 492.517 kb on - strand at 492.517 kb on - strand at 492.517 kb on - strand at 492.517 kb on - strand at 492.517 kb on - strand at 492.517 kb on - strand at 492.517 kb on - strand at 492.517 kb on - strand at 492.517 kb on - strand at 492.517 kb on - strand at 492.517 kb on - strand at 492.517 kb on - strand at 492.518 kb on + strand at 492.518 kb on + strand at 492.518 kb on + strand at 492.518 kb on + strand at 492.518 kb on + strand at 492.519 kb on - strand at 492.519 kb on - strand at 492.519 kb on - strand at 492.519 kb on - strand at 492.519 kb on - strand at 492.519 kb on - strand at 493.076 kb on + strand, within MPMX19_00492 at 493.077 kb on - strand, within MPMX19_00492 at 493.077 kb on - strand, within MPMX19_00492 at 493.166 kb on + strand, within MPMX19_00492 at 493.166 kb on + strand, within MPMX19_00492 at 493.166 kb on + strand, within MPMX19_00492 at 493.166 kb on + strand, within MPMX19_00492 at 493.166 kb on + strand, within MPMX19_00492 at 493.166 kb on + strand, within MPMX19_00492 at 493.166 kb on + strand, within MPMX19_00492 at 493.167 kb on - strand, within MPMX19_00492 at 493.167 kb on - strand, within MPMX19_00492 at 493.167 kb on - strand, within MPMX19_00492 at 493.167 kb on - strand, within MPMX19_00492 at 493.167 kb on - strand, within MPMX19_00492 at 493.167 kb on - strand, within MPMX19_00492
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 490,583 + MPMX19_00489 0.81 +0.4 490,583 + MPMX19_00489 0.81 +1.4 490,583 + MPMX19_00489 0.81 +0.8 490,583 + MPMX19_00489 0.81 -0.9 490,584 - MPMX19_00489 0.81 +0.4 490,584 - MPMX19_00489 0.81 -0.9 490,584 - MPMX19_00489 0.81 -0.6 490,584 - MPMX19_00489 0.81 -2.1 490,584 - MPMX19_00489 0.81 +0.7 490,656 + MPMX19_00489 0.89 -1.0 490,656 + MPMX19_00489 0.89 -1.2 490,656 + MPMX19_00489 0.89 +1.0 490,656 + MPMX19_00489 0.89 -0.9 490,657 - MPMX19_00489 0.89 -1.2 490,657 - MPMX19_00489 0.89 -1.5 490,657 - MPMX19_00489 0.89 +2.2 490,657 - MPMX19_00489 0.89 -1.2 490,720 + -1.4 490,720 + -1.4 490,720 + -0.5 490,720 + +0.7 490,720 + -0.6 490,720 + -1.0 490,720 + -0.4 490,720 + -0.6 490,720 + -1.4 490,720 + -0.7 490,720 + +0.9 490,720 + -1.6 490,720 + -0.6 490,720 + +0.4 490,720 + +0.4 490,720 + -0.2 490,721 - -0.2 490,721 - +0.1 490,721 - +1.4 490,721 - +0.8 490,721 - -0.4 491,080 + MPMX19_00490 0.38 -0.2 491,080 + MPMX19_00490 0.38 +0.4 491,080 + MPMX19_00490 0.38 +0.7 491,080 + MPMX19_00490 0.38 +0.4 491,080 + MPMX19_00490 0.38 +0.0 491,080 + MPMX19_00490 0.38 -1.0 491,081 - MPMX19_00490 0.38 -2.6 491,081 - MPMX19_00490 0.38 +1.1 491,081 - MPMX19_00490 0.38 -2.2 491,251 + MPMX19_00490 0.63 -0.2 491,251 + MPMX19_00490 0.63 -1.0 491,251 + MPMX19_00490 0.63 -0.2 491,251 + MPMX19_00490 0.63 -1.3 491,251 + MPMX19_00490 0.63 +0.7 491,251 + MPMX19_00490 0.63 -0.9 491,251 + MPMX19_00490 0.63 -1.4 491,251 + MPMX19_00490 0.63 +1.4 491,251 + MPMX19_00490 0.63 -0.7 491,251 + MPMX19_00490 0.63 -1.2 491,252 - MPMX19_00490 0.63 -0.4 491,252 - MPMX19_00490 0.63 -0.9 491,252 - MPMX19_00490 0.63 -1.2 491,252 - MPMX19_00490 0.63 -0.6 491,252 - MPMX19_00490 0.63 -0.2 491,252 - MPMX19_00490 0.63 -0.9 491,252 - MPMX19_00490 0.63 -0.9 491,252 - MPMX19_00490 0.63 -0.6 491,252 - MPMX19_00490 0.63 -0.6 491,294 + MPMX19_00490 0.69 +0.4 491,294 + MPMX19_00490 0.69 -1.4 491,470 + -1.2 491,470 + +0.7 491,470 + -0.6 491,470 + -2.2 491,470 + +0.8 491,470 + -1.2 491,470 + -0.7 491,470 + +1.4 491,470 + +0.1 491,470 + -0.9 491,470 + +0.8 491,470 + +0.1 491,470 + -0.9 491,470 + -1.5 491,471 - -0.3 491,471 - -0.2 491,471 - +0.7 491,471 - -0.7 491,471 - +0.4 491,471 - +0.1 491,471 - -1.6 491,471 - -0.4 491,471 - -1.6 491,471 - -0.9 491,471 - +1.4 491,471 - -0.8 491,471 - +1.4 491,471 - +1.4 491,471 - -1.5 491,471 - +0.8 491,471 - -1.0 491,471 - -1.2 491,471 - -0.4 491,471 - +0.0 491,471 - -0.2 491,471 - -0.6 491,471 - -0.8 491,471 - +1.4 491,471 - -0.9 491,471 - -1.0 491,471 - +1.8 491,471 - +0.1 491,559 + -1.5 491,559 + -0.8 491,559 + -1.7 491,559 + -1.7 491,559 + -0.6 491,560 - -1.6 491,560 - +0.0 491,568 + -1.5 491,568 + +0.1 491,568 + -0.6 491,568 + -1.2 491,568 + -0.4 491,568 + -0.6 491,568 + -0.7 491,568 + -1.2 491,568 + -0.3 491,568 + -0.2 491,568 + -0.2 491,569 - +0.4 491,569 - -1.2 491,569 - -0.6 491,569 - -1.5 491,569 - -1.0 491,569 - -0.9 491,569 - +1.2 491,569 - -0.2 491,569 - -0.6 491,569 - -1.6 491,569 - -0.9 491,569 - +0.1 491,569 - +0.8 491,646 + MPMX19_00491 0.13 -0.2 491,646 + MPMX19_00491 0.13 +1.4 491,646 + MPMX19_00491 0.13 -0.2 491,647 - MPMX19_00491 0.13 -1.4 491,673 + MPMX19_00491 0.15 +1.1 491,674 - MPMX19_00491 0.16 -1.7 491,674 - MPMX19_00491 0.16 -2.7 491,674 - MPMX19_00491 0.16 -1.6 491,674 - MPMX19_00491 0.16 -0.6 491,712 + MPMX19_00491 0.19 -1.2 491,712 + MPMX19_00491 0.19 +1.0 491,712 + MPMX19_00491 0.19 -0.9 491,713 - MPMX19_00491 0.20 -1.6 491,713 - MPMX19_00491 0.20 -0.2 491,713 - MPMX19_00491 0.20 +0.4 491,713 - MPMX19_00491 0.20 -1.6 491,713 - MPMX19_00491 0.20 -1.0 491,850 + MPMX19_00491 0.34 +1.4 491,850 + MPMX19_00491 0.34 -0.6 491,850 + MPMX19_00491 0.34 -0.1 491,850 + MPMX19_00491 0.34 -1.2 491,850 + MPMX19_00491 0.34 -0.9 491,851 - MPMX19_00491 0.34 -0.7 491,851 - MPMX19_00491 0.34 -0.6 491,851 - MPMX19_00491 0.34 +0.4 491,851 - MPMX19_00491 0.34 -1.4 491,851 - MPMX19_00491 0.34 -0.2 491,851 - MPMX19_00491 0.34 -0.6 491,907 + MPMX19_00491 0.40 -2.0 491,907 + MPMX19_00491 0.40 -1.0 491,907 + MPMX19_00491 0.40 +0.4 491,907 + MPMX19_00491 0.40 -0.9 491,908 - MPMX19_00491 0.40 -2.5 491,908 - MPMX19_00491 0.40 -0.6 491,908 - MPMX19_00491 0.40 -0.7 491,908 - MPMX19_00491 0.40 -0.2 491,908 - MPMX19_00491 0.40 -1.9 491,908 - MPMX19_00491 0.40 -0.2 491,908 - MPMX19_00491 0.40 +0.8 491,908 - MPMX19_00491 0.40 -1.2 491,908 - MPMX19_00491 0.40 -1.6 491,908 - MPMX19_00491 0.40 +0.0 492,294 + MPMX19_00491 0.80 +0.4 492,294 + MPMX19_00491 0.80 -0.2 492,294 + MPMX19_00491 0.80 +1.0 492,295 - MPMX19_00491 0.80 -1.4 492,295 - MPMX19_00491 0.80 -0.6 492,295 - MPMX19_00491 0.80 +0.6 492,295 - MPMX19_00491 0.80 -0.2 492,295 - MPMX19_00491 0.80 -0.9 492,295 - MPMX19_00491 0.80 -1.6 492,415 + -1.7 492,415 + -0.9 492,415 + +0.0 492,415 + +0.1 492,415 + -0.7 492,415 + -1.6 492,416 - +0.8 492,416 - -0.2 492,416 - -0.9 492,416 - -2.0 492,478 + -0.2 492,510 + -0.2 492,510 + -0.9 492,510 + -0.6 492,511 - -0.2 492,511 - -0.2 492,511 - -0.4 492,511 - +0.7 492,513 + -1.4 492,513 + +0.6 492,513 + -0.9 492,513 + -1.5 492,513 + +0.4 492,513 + -1.0 492,513 + -0.7 492,513 + +0.4 492,513 + -0.4 492,513 + +1.0 492,513 + -1.2 492,513 + +0.4 492,513 + -1.9 492,513 + -2.0 492,513 + -2.0 492,513 + -0.9 492,514 - -0.7 492,514 - -0.6 492,514 - -0.2 492,514 - -0.2 492,514 - -0.9 492,514 - -0.6 492,514 - -1.3 492,514 - -0.9 492,514 - -1.7 492,514 - -1.9 492,514 - -0.9 492,514 - -0.2 492,514 - -0.2 492,514 - -0.2 492,514 - +0.2 492,514 - +0.8 492,514 - -0.6 492,514 - -0.9 492,514 - -1.6 492,514 - -1.7 492,514 - -0.6 492,514 - -1.2 492,514 - -0.6 492,514 - -2.0 492,516 + -2.0 492,516 + -0.9 492,516 + -1.4 492,516 + -0.5 492,516 + +0.6 492,516 + -0.0 492,516 + -0.7 492,516 + -0.5 492,516 + -0.2 492,516 + -1.2 492,516 + +1.4 492,516 + -0.2 492,516 + -1.2 492,516 + +0.7 492,516 + +0.4 492,516 + +0.4 492,517 - -0.4 492,517 - -0.9 492,517 - -2.7 492,517 - -0.9 492,517 - -1.4 492,517 - -0.6 492,517 - +0.4 492,517 - -0.2 492,517 - -0.4 492,517 - -0.7 492,517 - +1.0 492,517 - +0.5 492,517 - -0.0 492,517 - +0.4 492,517 - -0.7 492,517 - -0.2 492,518 + +1.0 492,518 + -0.4 492,518 + -1.6 492,518 + +0.3 492,518 + -0.4 492,519 - -2.5 492,519 - -0.6 492,519 - -1.2 492,519 - +0.4 492,519 - +1.4 492,519 - -1.2 493,076 + MPMX19_00492 0.48 +1.0 493,077 - MPMX19_00492 0.48 -1.6 493,077 - MPMX19_00492 0.48 +1.2 493,166 + MPMX19_00492 0.57 -1.7 493,166 + MPMX19_00492 0.57 +0.4 493,166 + MPMX19_00492 0.57 +0.4 493,166 + MPMX19_00492 0.57 +0.7 493,166 + MPMX19_00492 0.57 -0.1 493,166 + MPMX19_00492 0.57 -0.7 493,166 + MPMX19_00492 0.57 +1.7 493,167 - MPMX19_00492 0.57 -0.2 493,167 - MPMX19_00492 0.57 +0.4 493,167 - MPMX19_00492 0.57 -0.7 493,167 - MPMX19_00492 0.57 -1.0 493,167 - MPMX19_00492 0.57 +0.1 493,167 - MPMX19_00492 0.57 +0.4
Or see this region's nucleotide sequence