Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00480 and MPMX19_00481 are separated by 22 nucleotides MPMX19_00481 and MPMX19_00482 are separated by 264 nucleotides
MPMX19_00480: MPMX19_00480 - hypothetical protein, at 477,899 to 481,171
_00480
MPMX19_00481: MPMX19_00481 - hypothetical protein, at 481,194 to 481,952
_00481
MPMX19_00482: MPMX19_00482 - Sensor histidine kinase RcsC, at 482,217 to 483,824
_00482
Position (kb) 481
482 Strain fitness (log2 ratio) -2
-1
0
1
2 at 480.242 kb on + strand, within MPMX19_00480 at 480.242 kb on + strand, within MPMX19_00480 at 480.242 kb on + strand, within MPMX19_00480 at 480.242 kb on + strand, within MPMX19_00480 at 480.243 kb on - strand, within MPMX19_00480 at 480.243 kb on - strand, within MPMX19_00480 at 480.243 kb on - strand, within MPMX19_00480 at 480.243 kb on - strand, within MPMX19_00480 at 480.243 kb on - strand, within MPMX19_00480 at 480.243 kb on - strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.330 kb on - strand, within MPMX19_00480 at 480.330 kb on - strand, within MPMX19_00480 at 480.330 kb on - strand, within MPMX19_00480 at 480.330 kb on - strand, within MPMX19_00480 at 480.330 kb on - strand, within MPMX19_00480 at 480.330 kb on - strand, within MPMX19_00480 at 480.330 kb on - strand, within MPMX19_00480 at 480.713 kb on + strand, within MPMX19_00480 at 480.713 kb on + strand, within MPMX19_00480 at 480.713 kb on + strand, within MPMX19_00480 at 480.714 kb on - strand, within MPMX19_00480 at 480.714 kb on - strand, within MPMX19_00480 at 480.851 kb on + strand at 480.851 kb on + strand at 480.851 kb on + strand at 480.852 kb on - strand at 480.852 kb on - strand at 480.852 kb on - strand at 480.866 kb on + strand at 480.866 kb on + strand at 480.866 kb on + strand at 480.866 kb on + strand at 480.866 kb on + strand at 480.866 kb on + strand at 481.031 kb on + strand at 481.031 kb on + strand at 481.031 kb on + strand at 481.031 kb on + strand at 481.031 kb on + strand at 481.031 kb on + strand at 481.031 kb on + strand at 481.031 kb on + strand at 481.031 kb on + strand at 481.031 kb on + strand at 481.032 kb on - strand at 481.032 kb on - strand at 481.032 kb on - strand at 481.032 kb on - strand at 481.032 kb on - strand at 481.032 kb on - strand at 481.032 kb on - strand at 481.032 kb on - strand at 481.073 kb on + strand at 481.073 kb on + strand at 481.073 kb on + strand at 481.073 kb on + strand at 481.073 kb on + strand at 481.073 kb on + strand at 481.073 kb on + strand at 481.074 kb on - strand at 481.074 kb on - strand at 481.074 kb on - strand at 481.074 kb on - strand at 481.074 kb on - strand at 481.074 kb on - strand at 481.074 kb on - strand at 481.074 kb on - strand at 481.097 kb on + strand at 481.097 kb on + strand at 481.098 kb on - strand at 481.098 kb on - strand at 481.098 kb on - strand at 481.170 kb on - strand at 481.201 kb on + strand at 481.202 kb on - strand at 481.345 kb on + strand, within MPMX19_00481 at 481.345 kb on + strand, within MPMX19_00481 at 481.345 kb on + strand, within MPMX19_00481 at 481.345 kb on + strand, within MPMX19_00481 at 481.345 kb on + strand, within MPMX19_00481 at 481.345 kb on + strand, within MPMX19_00481 at 481.345 kb on + strand, within MPMX19_00481 at 481.345 kb on + strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.648 kb on + strand, within MPMX19_00481 at 481.648 kb on + strand, within MPMX19_00481 at 481.648 kb on + strand, within MPMX19_00481 at 481.648 kb on + strand, within MPMX19_00481 at 481.649 kb on - strand, within MPMX19_00481 at 481.649 kb on - strand, within MPMX19_00481 at 481.649 kb on - strand, within MPMX19_00481 at 481.649 kb on - strand, within MPMX19_00481 at 481.649 kb on - strand, within MPMX19_00481 at 481.649 kb on - strand, within MPMX19_00481 at 481.649 kb on - strand, within MPMX19_00481 at 481.869 kb on + strand, within MPMX19_00481 at 481.870 kb on - strand, within MPMX19_00481 at 481.870 kb on - strand, within MPMX19_00481 at 481.960 kb on + strand at 481.960 kb on + strand at 481.960 kb on + strand at 481.960 kb on + strand at 481.960 kb on + strand at 481.960 kb on + strand at 481.960 kb on + strand at 481.960 kb on + strand at 481.960 kb on + strand at 481.960 kb on + strand at 481.960 kb on + strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.962 kb on + strand at 481.962 kb on + strand at 481.962 kb on + strand at 481.963 kb on - strand at 481.963 kb on - strand at 481.963 kb on - strand at 481.963 kb on - strand at 481.963 kb on - strand at 481.963 kb on - strand at 481.963 kb on - strand at 481.963 kb on - strand at 481.963 kb on - strand at 481.963 kb on - strand at 482.035 kb on + strand at 482.036 kb on - strand at 482.036 kb on - strand at 482.067 kb on + strand at 482.067 kb on + strand at 482.068 kb on - strand at 482.116 kb on + strand at 482.116 kb on + strand at 482.116 kb on + strand at 482.116 kb on + strand at 482.116 kb on + strand at 482.117 kb on - strand at 482.117 kb on - strand at 482.117 kb on - strand at 482.117 kb on - strand at 482.127 kb on + strand at 482.127 kb on + strand at 482.127 kb on + strand at 482.128 kb on - strand at 482.182 kb on + strand at 482.182 kb on + strand at 482.182 kb on + strand at 482.183 kb on - strand at 482.183 kb on - strand at 482.196 kb on + strand at 482.196 kb on + strand at 482.196 kb on + strand at 482.196 kb on + strand at 482.196 kb on + strand at 482.197 kb on - strand at 482.197 kb on - strand at 482.197 kb on - strand at 482.197 kb on - strand at 482.197 kb on - strand at 482.197 kb on - strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.462 kb on + strand, within MPMX19_00482
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 480,242 + MPMX19_00480 0.72 -2.7 480,242 + MPMX19_00480 0.72 +0.1 480,242 + MPMX19_00480 0.72 -1.3 480,242 + MPMX19_00480 0.72 +1.7 480,243 - MPMX19_00480 0.72 -0.5 480,243 - MPMX19_00480 0.72 +1.8 480,243 - MPMX19_00480 0.72 +0.7 480,243 - MPMX19_00480 0.72 -1.7 480,243 - MPMX19_00480 0.72 -0.7 480,243 - MPMX19_00480 0.72 +0.4 480,299 + MPMX19_00480 0.73 -1.0 480,299 + MPMX19_00480 0.73 -0.2 480,299 + MPMX19_00480 0.73 +0.4 480,299 + MPMX19_00480 0.73 -1.4 480,299 + MPMX19_00480 0.73 -2.7 480,299 + MPMX19_00480 0.73 -1.7 480,299 + MPMX19_00480 0.73 +0.6 480,299 + MPMX19_00480 0.73 -0.2 480,299 + MPMX19_00480 0.73 -0.7 480,299 + MPMX19_00480 0.73 -1.2 480,299 + MPMX19_00480 0.73 -0.2 480,299 + MPMX19_00480 0.73 -1.2 480,299 + MPMX19_00480 0.73 +0.0 480,299 + MPMX19_00480 0.73 -2.3 480,299 + MPMX19_00480 0.73 -1.4 480,299 + MPMX19_00480 0.73 -1.5 480,299 + MPMX19_00480 0.73 -0.2 480,299 + MPMX19_00480 0.73 -0.4 480,299 + MPMX19_00480 0.73 -0.2 480,299 + MPMX19_00480 0.73 +1.2 480,299 + MPMX19_00480 0.73 +0.8 480,300 - MPMX19_00480 0.73 -0.2 480,300 - MPMX19_00480 0.73 -1.0 480,300 - MPMX19_00480 0.73 -2.3 480,300 - MPMX19_00480 0.73 -1.4 480,300 - MPMX19_00480 0.73 +0.8 480,300 - MPMX19_00480 0.73 -0.7 480,300 - MPMX19_00480 0.73 -0.2 480,300 - MPMX19_00480 0.73 +0.4 480,300 - MPMX19_00480 0.73 +0.0 480,300 - MPMX19_00480 0.73 -1.6 480,300 - MPMX19_00480 0.73 -0.6 480,300 - MPMX19_00480 0.73 -1.2 480,300 - MPMX19_00480 0.73 +1.4 480,300 - MPMX19_00480 0.73 +0.4 480,300 - MPMX19_00480 0.73 -0.7 480,300 - MPMX19_00480 0.73 -0.2 480,300 - MPMX19_00480 0.73 -1.4 480,300 - MPMX19_00480 0.73 -1.2 480,300 - MPMX19_00480 0.73 +0.4 480,300 - MPMX19_00480 0.73 +0.4 480,300 - MPMX19_00480 0.73 -0.6 480,300 - MPMX19_00480 0.73 -0.4 480,300 - MPMX19_00480 0.73 -0.2 480,300 - MPMX19_00480 0.73 -1.7 480,300 - MPMX19_00480 0.73 +0.3 480,300 - MPMX19_00480 0.73 -0.6 480,300 - MPMX19_00480 0.73 -2.2 480,300 - MPMX19_00480 0.73 -2.7 480,300 - MPMX19_00480 0.73 +0.1 480,300 - MPMX19_00480 0.73 -1.3 480,300 - MPMX19_00480 0.73 -0.3 480,300 - MPMX19_00480 0.73 -1.4 480,300 - MPMX19_00480 0.73 -1.6 480,329 + MPMX19_00480 0.74 -0.6 480,329 + MPMX19_00480 0.74 -0.5 480,329 + MPMX19_00480 0.74 -0.9 480,329 + MPMX19_00480 0.74 -1.3 480,329 + MPMX19_00480 0.74 -0.2 480,329 + MPMX19_00480 0.74 +0.2 480,329 + MPMX19_00480 0.74 -0.2 480,329 + MPMX19_00480 0.74 -1.4 480,329 + MPMX19_00480 0.74 -0.7 480,329 + MPMX19_00480 0.74 -0.2 480,329 + MPMX19_00480 0.74 -0.3 480,329 + MPMX19_00480 0.74 -1.0 480,329 + MPMX19_00480 0.74 -1.6 480,329 + MPMX19_00480 0.74 +0.6 480,329 + MPMX19_00480 0.74 +0.8 480,329 + MPMX19_00480 0.74 +1.4 480,330 - MPMX19_00480 0.74 +1.8 480,330 - MPMX19_00480 0.74 -0.6 480,330 - MPMX19_00480 0.74 -2.4 480,330 - MPMX19_00480 0.74 -1.7 480,330 - MPMX19_00480 0.74 +2.0 480,330 - MPMX19_00480 0.74 -0.3 480,330 - MPMX19_00480 0.74 -0.9 480,713 + MPMX19_00480 0.86 +1.2 480,713 + MPMX19_00480 0.86 -1.2 480,713 + MPMX19_00480 0.86 -1.4 480,714 - MPMX19_00480 0.86 +0.5 480,714 - MPMX19_00480 0.86 -2.0 480,851 + -0.6 480,851 + -1.9 480,851 + -1.4 480,852 - +1.4 480,852 - +0.4 480,852 - -0.5 480,866 + -1.1 480,866 + -1.2 480,866 + -2.3 480,866 + -0.4 480,866 + -0.6 480,866 + +0.8 481,031 + -1.0 481,031 + -1.6 481,031 + -0.8 481,031 + -1.4 481,031 + +0.7 481,031 + -1.2 481,031 + -1.2 481,031 + -1.4 481,031 + -0.2 481,031 + -1.6 481,032 - -1.0 481,032 - -0.2 481,032 - -1.3 481,032 - -1.7 481,032 - +1.4 481,032 - +0.4 481,032 - -1.7 481,032 - +0.1 481,073 + -1.2 481,073 + +0.4 481,073 + -1.2 481,073 + -1.2 481,073 + +1.4 481,073 + +0.1 481,073 + +1.4 481,074 - +0.0 481,074 - -0.3 481,074 - +0.4 481,074 - -0.5 481,074 - +0.6 481,074 - -0.2 481,074 - +1.4 481,074 - -1.7 481,097 + -0.2 481,097 + -1.2 481,098 - -1.2 481,098 - -0.9 481,098 - -0.9 481,170 - +0.4 481,201 + -1.4 481,202 - -1.7 481,345 + MPMX19_00481 0.20 -1.2 481,345 + MPMX19_00481 0.20 -1.4 481,345 + MPMX19_00481 0.20 -1.7 481,345 + MPMX19_00481 0.20 -1.2 481,345 + MPMX19_00481 0.20 +1.2 481,345 + MPMX19_00481 0.20 -0.9 481,345 + MPMX19_00481 0.20 -1.1 481,345 + MPMX19_00481 0.20 +0.3 481,346 - MPMX19_00481 0.20 -1.6 481,346 - MPMX19_00481 0.20 -0.6 481,346 - MPMX19_00481 0.20 -0.2 481,346 - MPMX19_00481 0.20 +0.6 481,346 - MPMX19_00481 0.20 -0.6 481,346 - MPMX19_00481 0.20 -2.0 481,346 - MPMX19_00481 0.20 +1.4 481,346 - MPMX19_00481 0.20 -1.7 481,346 - MPMX19_00481 0.20 -0.3 481,346 - MPMX19_00481 0.20 -1.0 481,346 - MPMX19_00481 0.20 +0.4 481,648 + MPMX19_00481 0.60 -0.2 481,648 + MPMX19_00481 0.60 -0.9 481,648 + MPMX19_00481 0.60 -0.9 481,648 + MPMX19_00481 0.60 -0.9 481,649 - MPMX19_00481 0.60 +0.4 481,649 - MPMX19_00481 0.60 -0.9 481,649 - MPMX19_00481 0.60 -0.8 481,649 - MPMX19_00481 0.60 -1.9 481,649 - MPMX19_00481 0.60 +0.0 481,649 - MPMX19_00481 0.60 +1.4 481,649 - MPMX19_00481 0.60 +0.2 481,869 + MPMX19_00481 0.89 -1.6 481,870 - MPMX19_00481 0.89 +0.1 481,870 - MPMX19_00481 0.89 -0.5 481,960 + -1.8 481,960 + -2.2 481,960 + -0.8 481,960 + -0.9 481,960 + -1.4 481,960 + -0.2 481,960 + +1.2 481,960 + -0.2 481,960 + -0.9 481,960 + +0.7 481,960 + +0.0 481,961 - -0.9 481,961 - +0.1 481,961 - +0.1 481,961 - -2.7 481,961 - -2.3 481,961 - -0.9 481,961 - -0.4 481,961 - -0.2 481,961 - -1.2 481,961 - -0.6 481,961 - -0.6 481,961 - -0.5 481,961 - -0.6 481,961 - +0.5 481,962 + -0.6 481,962 + -0.1 481,962 + +0.1 481,963 - -1.7 481,963 - -1.2 481,963 - -0.9 481,963 - -2.0 481,963 - -0.6 481,963 - +1.4 481,963 - -1.2 481,963 - +1.4 481,963 - -0.8 481,963 - +1.1 482,035 + -0.7 482,036 - -1.2 482,036 - -1.9 482,067 + -0.6 482,067 + -0.7 482,068 - +0.1 482,116 + +1.4 482,116 + -0.9 482,116 + +0.1 482,116 + -0.9 482,116 + -0.9 482,117 - -1.1 482,117 - +1.0 482,117 - -0.6 482,117 - -1.8 482,127 + +1.4 482,127 + -1.6 482,127 + -0.6 482,128 - -0.8 482,182 + +0.4 482,182 + -0.5 482,182 + -0.5 482,183 - +1.4 482,183 - -0.7 482,196 + -1.2 482,196 + -2.2 482,196 + -1.2 482,196 + -0.2 482,196 + +0.7 482,197 - -0.6 482,197 - +0.8 482,197 - -1.4 482,197 - -0.9 482,197 - -1.3 482,197 - -0.9 482,209 + -2.7 482,209 + -0.7 482,209 + -0.3 482,209 + +1.0 482,209 + -0.6 482,209 + -0.8 482,209 + -0.2 482,209 + -0.9 482,209 + +0.3 482,209 + -0.2 482,209 + -0.6 482,209 + +1.4 482,210 - +0.1 482,210 - -0.9 482,210 - -0.2 482,210 - -0.4 482,210 - +1.0 482,210 - -0.2 482,210 - -1.4 482,210 - -0.4 482,210 - +0.6 482,210 - -1.4 482,210 - +1.4 482,210 - -1.9 482,210 - +0.3 482,210 - -0.7 482,210 - -0.4 482,210 - +0.8 482,210 - -0.9 482,462 + MPMX19_00482 0.15 +0.1
Or see this region's nucleotide sequence