Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00343 and MPMX19_00344 are separated by 141 nucleotides MPMX19_00344 and MPMX19_00345 are separated by 25 nucleotides MPMX19_00345 and MPMX19_00346 are separated by 99 nucleotides MPMX19_00346 and MPMX19_00347 are separated by 874 nucleotides
MPMX19_00343: MPMX19_00343 - Peptide chain release factor RF2, at 351,869 to 352,837
_00343
MPMX19_00344: MPMX19_00344 - hypothetical protein, at 352,979 to 353,305
_00344
MPMX19_00345: MPMX19_00345 - hypothetical protein, at 353,331 to 353,567
_00345
MPMX19_00346: MPMX19_00346 - Trehalose-phosphate phosphatase, at 353,667 to 354,467
_00346
MPMX19_00347: MPMX19_00347 - hypothetical protein, at 355,342 to 355,680
_00347
Position (kb) 353
354
355 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 352.951 kb on + strand at 352.951 kb on + strand at 352.951 kb on + strand at 352.951 kb on + strand at 352.951 kb on + strand at 352.951 kb on + strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 353.198 kb on + strand, within MPMX19_00344 at 353.199 kb on - strand, within MPMX19_00344 at 353.199 kb on - strand, within MPMX19_00344 at 353.199 kb on - strand, within MPMX19_00344 at 353.199 kb on - strand, within MPMX19_00344 at 353.199 kb on - strand, within MPMX19_00344 at 353.282 kb on + strand at 353.282 kb on + strand at 353.282 kb on + strand at 353.282 kb on + strand at 353.282 kb on + strand at 353.282 kb on + strand at 353.282 kb on + strand at 353.283 kb on - strand at 353.283 kb on - strand at 353.283 kb on - strand at 353.283 kb on - strand at 353.283 kb on - strand at 353.600 kb on + strand at 353.600 kb on + strand at 353.600 kb on + strand at 353.600 kb on + strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.616 kb on + strand at 353.616 kb on + strand at 353.851 kb on + strand, within MPMX19_00346 at 353.851 kb on + strand, within MPMX19_00346 at 353.851 kb on + strand, within MPMX19_00346 at 353.852 kb on - strand, within MPMX19_00346 at 353.852 kb on - strand, within MPMX19_00346 at 353.852 kb on - strand, within MPMX19_00346 at 353.852 kb on - strand, within MPMX19_00346 at 353.852 kb on - strand, within MPMX19_00346 at 353.852 kb on - strand, within MPMX19_00346 at 353.852 kb on - strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.214 kb on + strand, within MPMX19_00346 at 354.214 kb on + strand, within MPMX19_00346 at 354.214 kb on + strand, within MPMX19_00346 at 354.214 kb on + strand, within MPMX19_00346 at 354.215 kb on - strand, within MPMX19_00346 at 354.215 kb on - strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.380 kb on - strand, within MPMX19_00346 at 354.380 kb on - strand, within MPMX19_00346 at 354.380 kb on - strand, within MPMX19_00346 at 354.380 kb on - strand, within MPMX19_00346 at 354.380 kb on - strand, within MPMX19_00346 at 354.380 kb on - strand, within MPMX19_00346 at 354.380 kb on - strand, within MPMX19_00346 at 354.539 kb on - strand at 354.539 kb on - strand at 354.677 kb on + strand at 354.677 kb on + strand at 354.677 kb on + strand at 354.678 kb on - strand at 354.733 kb on + strand at 354.734 kb on - strand at 354.788 kb on - strand at 354.881 kb on + strand at 354.881 kb on + strand at 354.881 kb on + strand at 354.882 kb on - strand at 355.113 kb on + strand at 355.113 kb on + strand at 355.113 kb on + strand at 355.113 kb on + strand at 355.113 kb on + strand at 355.114 kb on - strand at 355.114 kb on - strand at 355.114 kb on - strand at 355.114 kb on - strand at 355.114 kb on - strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.134 kb on + strand at 355.134 kb on + strand at 355.134 kb on + strand at 355.134 kb on + strand at 355.134 kb on + strand at 355.134 kb on + strand at 355.135 kb on - strand at 355.135 kb on - strand at 355.135 kb on - strand at 355.135 kb on - strand at 355.135 kb on - strand at 355.135 kb on - strand at 355.313 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 352,951 + -0.9 352,951 + -0.6 352,951 + -0.6 352,951 + +0.7 352,951 + +0.4 352,951 + +0.8 352,952 - -0.8 352,952 - -1.0 352,952 - -1.5 352,952 - +1.0 352,952 - -1.0 352,952 - +0.1 352,952 - -0.2 352,952 - +0.1 352,952 - -0.6 353,198 + MPMX19_00344 0.67 -0.7 353,199 - MPMX19_00344 0.67 -0.4 353,199 - MPMX19_00344 0.67 -0.2 353,199 - MPMX19_00344 0.67 -1.9 353,199 - MPMX19_00344 0.67 -0.7 353,199 - MPMX19_00344 0.67 -0.3 353,282 + -0.5 353,282 + -0.6 353,282 + +0.1 353,282 + -0.2 353,282 + +0.1 353,282 + -0.6 353,282 + +0.4 353,283 - +0.3 353,283 - -0.6 353,283 - -0.9 353,283 - +0.1 353,283 - +0.6 353,600 + -1.2 353,600 + -1.2 353,600 + -0.6 353,600 + -1.5 353,601 - -1.2 353,601 - -0.2 353,601 - -1.6 353,601 - -0.2 353,601 - +0.4 353,601 - -0.5 353,601 - -1.2 353,601 - -0.9 353,601 - +0.8 353,601 - -0.6 353,616 + -1.7 353,616 + -1.2 353,851 + MPMX19_00346 0.23 +3.0 353,851 + MPMX19_00346 0.23 +0.4 353,851 + MPMX19_00346 0.23 -0.4 353,852 - MPMX19_00346 0.23 +0.8 353,852 - MPMX19_00346 0.23 +1.4 353,852 - MPMX19_00346 0.23 +0.4 353,852 - MPMX19_00346 0.23 +1.0 353,852 - MPMX19_00346 0.23 -0.2 353,852 - MPMX19_00346 0.23 -0.2 353,852 - MPMX19_00346 0.23 +1.4 354,151 + MPMX19_00346 0.60 -0.4 354,151 + MPMX19_00346 0.60 -1.2 354,151 + MPMX19_00346 0.60 +1.4 354,151 + MPMX19_00346 0.60 -1.6 354,151 + MPMX19_00346 0.60 -0.9 354,151 + MPMX19_00346 0.60 -0.2 354,151 + MPMX19_00346 0.60 -0.6 354,151 + MPMX19_00346 0.60 -0.9 354,151 + MPMX19_00346 0.60 -0.9 354,151 + MPMX19_00346 0.60 -0.6 354,151 + MPMX19_00346 0.60 -0.2 354,151 + MPMX19_00346 0.60 -1.4 354,151 + MPMX19_00346 0.60 -2.2 354,151 + MPMX19_00346 0.60 -0.6 354,151 + MPMX19_00346 0.60 +0.4 354,152 - MPMX19_00346 0.61 +2.4 354,152 - MPMX19_00346 0.61 -1.2 354,152 - MPMX19_00346 0.61 -0.9 354,152 - MPMX19_00346 0.61 +0.4 354,152 - MPMX19_00346 0.61 -1.7 354,152 - MPMX19_00346 0.61 -0.2 354,152 - MPMX19_00346 0.61 +0.4 354,152 - MPMX19_00346 0.61 -0.8 354,152 - MPMX19_00346 0.61 +0.4 354,152 - MPMX19_00346 0.61 -0.2 354,152 - MPMX19_00346 0.61 -0.9 354,152 - MPMX19_00346 0.61 -0.6 354,152 - MPMX19_00346 0.61 +1.0 354,152 - MPMX19_00346 0.61 -1.2 354,152 - MPMX19_00346 0.61 -0.2 354,152 - MPMX19_00346 0.61 -0.2 354,152 - MPMX19_00346 0.61 -0.2 354,152 - MPMX19_00346 0.61 -0.2 354,152 - MPMX19_00346 0.61 -0.6 354,152 - MPMX19_00346 0.61 +0.4 354,214 + MPMX19_00346 0.68 -0.9 354,214 + MPMX19_00346 0.68 +2.4 354,214 + MPMX19_00346 0.68 -0.6 354,214 + MPMX19_00346 0.68 -0.6 354,215 - MPMX19_00346 0.68 +0.8 354,215 - MPMX19_00346 0.68 -1.6 354,379 + MPMX19_00346 0.89 -0.9 354,379 + MPMX19_00346 0.89 -0.9 354,379 + MPMX19_00346 0.89 -1.4 354,379 + MPMX19_00346 0.89 -1.4 354,379 + MPMX19_00346 0.89 -1.9 354,379 + MPMX19_00346 0.89 -0.9 354,379 + MPMX19_00346 0.89 -0.9 354,379 + MPMX19_00346 0.89 +1.4 354,379 + MPMX19_00346 0.89 +0.8 354,379 + MPMX19_00346 0.89 -0.8 354,379 + MPMX19_00346 0.89 +0.8 354,380 - MPMX19_00346 0.89 +1.4 354,380 - MPMX19_00346 0.89 -0.2 354,380 - MPMX19_00346 0.89 -0.2 354,380 - MPMX19_00346 0.89 +2.4 354,380 - MPMX19_00346 0.89 -1.2 354,380 - MPMX19_00346 0.89 -1.8 354,380 - MPMX19_00346 0.89 +0.8 354,539 - -0.6 354,539 - -0.2 354,677 + -0.6 354,677 + -0.4 354,677 + -0.6 354,678 - -0.9 354,733 + +0.4 354,734 - -0.2 354,788 - -1.4 354,881 + -1.7 354,881 + -2.2 354,881 + -0.6 354,882 - -1.7 355,113 + -0.2 355,113 + -0.6 355,113 + +0.4 355,113 + -0.9 355,113 + +1.4 355,114 - -0.9 355,114 - -1.6 355,114 - -0.1 355,114 - +0.4 355,114 - -1.7 355,115 + +0.4 355,115 + +1.7 355,115 + +0.2 355,115 + +0.2 355,115 + -1.6 355,115 + -2.4 355,115 + -0.3 355,115 + +2.2 355,115 + -0.9 355,115 + -0.9 355,115 + +0.4 355,115 + -1.1 355,115 + -1.2 355,115 + +0.1 355,115 + +1.1 355,115 + -0.9 355,116 - +0.0 355,116 - -1.7 355,116 - +0.4 355,116 - -2.2 355,116 - +0.4 355,116 - +0.7 355,116 - -0.5 355,116 - +0.4 355,116 - +0.0 355,116 - -0.2 355,116 - -0.9 355,116 - -1.2 355,116 - -0.7 355,116 - -1.6 355,116 - +2.0 355,116 - -0.6 355,116 - -0.0 355,116 - -0.6 355,116 - -0.9 355,134 + -0.4 355,134 + -0.2 355,134 + -1.9 355,134 + -0.1 355,134 + -1.4 355,134 + -1.2 355,135 - +0.8 355,135 - -0.6 355,135 - -0.7 355,135 - +0.1 355,135 - -0.9 355,135 - -1.4 355,313 + -0.2
Or see this region's nucleotide sequence