Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00317 and MPMX19_00318 overlap by 4 nucleotides MPMX19_00318 and MPMX19_00319 are separated by 31 nucleotides MPMX19_00319 and MPMX19_00320 are separated by 146 nucleotides
MPMX19_00317: MPMX19_00317 - hypothetical protein, at 320,828 to 322,555
_00317
MPMX19_00318: MPMX19_00318 - hypothetical protein, at 322,552 to 323,880
_00318
MPMX19_00319: MPMX19_00319 - hypothetical protein, at 323,912 to 324,544
_00319
MPMX19_00320: MPMX19_00320 - hypothetical protein, at 324,691 to 325,335
_00320
Position (kb) 322
323
324 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 321.683 kb on + strand, within MPMX19_00317 at 321.683 kb on + strand, within MPMX19_00317 at 321.683 kb on + strand, within MPMX19_00317 at 321.683 kb on + strand, within MPMX19_00317 at 321.683 kb on + strand, within MPMX19_00317 at 321.684 kb on - strand, within MPMX19_00317 at 321.684 kb on - strand, within MPMX19_00317 at 321.684 kb on - strand, within MPMX19_00317 at 321.684 kb on - strand, within MPMX19_00317 at 321.684 kb on - strand, within MPMX19_00317 at 321.684 kb on - strand, within MPMX19_00317 at 321.684 kb on - strand, within MPMX19_00317 at 321.684 kb on - strand, within MPMX19_00317 at 321.798 kb on - strand, within MPMX19_00317 at 321.854 kb on + strand, within MPMX19_00317 at 321.855 kb on - strand, within MPMX19_00317 at 321.892 kb on + strand, within MPMX19_00317 at 321.893 kb on - strand, within MPMX19_00317 at 321.955 kb on + strand, within MPMX19_00317 at 321.955 kb on + strand, within MPMX19_00317 at 321.955 kb on + strand, within MPMX19_00317 at 321.955 kb on + strand, within MPMX19_00317 at 321.956 kb on - strand, within MPMX19_00317 at 321.956 kb on - strand, within MPMX19_00317 at 321.956 kb on - strand, within MPMX19_00317 at 321.984 kb on - strand, within MPMX19_00317 at 321.984 kb on - strand, within MPMX19_00317 at 321.984 kb on - strand, within MPMX19_00317 at 322.109 kb on + strand, within MPMX19_00317 at 322.109 kb on + strand, within MPMX19_00317 at 322.109 kb on + strand, within MPMX19_00317 at 322.109 kb on + strand, within MPMX19_00317 at 322.109 kb on + strand, within MPMX19_00317 at 322.109 kb on + strand, within MPMX19_00317 at 322.109 kb on + strand, within MPMX19_00317 at 322.109 kb on + strand, within MPMX19_00317 at 322.109 kb on + strand, within MPMX19_00317 at 322.109 kb on + strand, within MPMX19_00317 at 322.109 kb on + strand, within MPMX19_00317 at 322.109 kb on + strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.110 kb on - strand, within MPMX19_00317 at 322.448 kb on + strand at 322.448 kb on + strand at 322.448 kb on + strand at 322.448 kb on + strand at 322.448 kb on + strand at 322.448 kb on + strand at 322.448 kb on + strand at 322.448 kb on + strand at 322.448 kb on + strand at 322.448 kb on + strand at 322.448 kb on + strand at 322.448 kb on + strand at 322.448 kb on + strand at 322.448 kb on + strand at 322.448 kb on + strand at 322.448 kb on + strand at 322.448 kb on + strand at 322.448 kb on + strand at 322.448 kb on + strand at 322.448 kb on + strand at 322.448 kb on + strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.449 kb on - strand at 322.600 kb on + strand at 322.600 kb on + strand at 322.600 kb on + strand at 322.601 kb on - strand at 322.601 kb on - strand at 322.601 kb on - strand at 322.601 kb on - strand at 322.601 kb on - strand at 322.690 kb on + strand, within MPMX19_00318 at 322.690 kb on + strand, within MPMX19_00318 at 322.690 kb on + strand, within MPMX19_00318 at 322.690 kb on + strand, within MPMX19_00318 at 322.690 kb on + strand, within MPMX19_00318 at 322.690 kb on + strand, within MPMX19_00318 at 322.690 kb on + strand, within MPMX19_00318 at 322.690 kb on + strand, within MPMX19_00318 at 322.690 kb on + strand, within MPMX19_00318 at 322.691 kb on - strand, within MPMX19_00318 at 322.691 kb on - strand, within MPMX19_00318 at 322.691 kb on - strand, within MPMX19_00318 at 322.691 kb on - strand, within MPMX19_00318 at 322.691 kb on - strand, within MPMX19_00318 at 322.691 kb on - strand, within MPMX19_00318 at 322.691 kb on - strand, within MPMX19_00318 at 322.691 kb on - strand, within MPMX19_00318 at 322.691 kb on - strand, within MPMX19_00318 at 322.691 kb on - strand, within MPMX19_00318 at 322.691 kb on - strand, within MPMX19_00318 at 322.691 kb on - strand, within MPMX19_00318 at 322.691 kb on - strand, within MPMX19_00318 at 323.070 kb on + strand, within MPMX19_00318 at 323.071 kb on - strand, within MPMX19_00318 at 323.071 kb on - strand, within MPMX19_00318 at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.816 kb on - strand at 323.816 kb on - strand at 323.912 kb on - strand at 324.194 kb on + strand, within MPMX19_00319 at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.487 kb on + strand at 324.488 kb on - strand at 324.488 kb on - strand at 324.586 kb on + strand at 324.586 kb on + strand at 324.587 kb on - strand at 324.587 kb on - strand at 324.587 kb on - strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.652 kb on + strand at 324.653 kb on - strand at 324.653 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 321,683 + MPMX19_00317 0.49 +0.2 321,683 + MPMX19_00317 0.49 -0.9 321,683 + MPMX19_00317 0.49 -0.9 321,683 + MPMX19_00317 0.49 -1.2 321,683 + MPMX19_00317 0.49 +0.4 321,684 - MPMX19_00317 0.50 +1.0 321,684 - MPMX19_00317 0.50 -1.6 321,684 - MPMX19_00317 0.50 -1.9 321,684 - MPMX19_00317 0.50 -0.9 321,684 - MPMX19_00317 0.50 +0.4 321,684 - MPMX19_00317 0.50 +0.0 321,684 - MPMX19_00317 0.50 -1.7 321,684 - MPMX19_00317 0.50 -1.0 321,798 - MPMX19_00317 0.56 +0.0 321,854 + MPMX19_00317 0.59 +0.4 321,855 - MPMX19_00317 0.59 -0.2 321,892 + MPMX19_00317 0.62 -1.7 321,893 - MPMX19_00317 0.62 -0.2 321,955 + MPMX19_00317 0.65 -0.2 321,955 + MPMX19_00317 0.65 +0.1 321,955 + MPMX19_00317 0.65 -0.7 321,955 + MPMX19_00317 0.65 +0.7 321,956 - MPMX19_00317 0.65 +1.4 321,956 - MPMX19_00317 0.65 -1.2 321,956 - MPMX19_00317 0.65 -0.2 321,984 - MPMX19_00317 0.67 +0.4 321,984 - MPMX19_00317 0.67 -1.0 321,984 - MPMX19_00317 0.67 -1.4 322,109 + MPMX19_00317 0.74 +3.4 322,109 + MPMX19_00317 0.74 -0.3 322,109 + MPMX19_00317 0.74 -0.7 322,109 + MPMX19_00317 0.74 -0.1 322,109 + MPMX19_00317 0.74 -0.9 322,109 + MPMX19_00317 0.74 +1.0 322,109 + MPMX19_00317 0.74 -2.3 322,109 + MPMX19_00317 0.74 -0.6 322,109 + MPMX19_00317 0.74 -0.9 322,109 + MPMX19_00317 0.74 -1.1 322,109 + MPMX19_00317 0.74 -1.6 322,109 + MPMX19_00317 0.74 +0.2 322,110 - MPMX19_00317 0.74 -2.5 322,110 - MPMX19_00317 0.74 +0.7 322,110 - MPMX19_00317 0.74 -0.2 322,110 - MPMX19_00317 0.74 -1.6 322,110 - MPMX19_00317 0.74 -2.0 322,110 - MPMX19_00317 0.74 -0.0 322,110 - MPMX19_00317 0.74 -1.2 322,110 - MPMX19_00317 0.74 -0.9 322,110 - MPMX19_00317 0.74 +1.1 322,110 - MPMX19_00317 0.74 +0.9 322,110 - MPMX19_00317 0.74 -0.4 322,110 - MPMX19_00317 0.74 -0.9 322,110 - MPMX19_00317 0.74 -0.2 322,110 - MPMX19_00317 0.74 -0.2 322,110 - MPMX19_00317 0.74 -0.2 322,110 - MPMX19_00317 0.74 -0.6 322,110 - MPMX19_00317 0.74 -0.3 322,110 - MPMX19_00317 0.74 -1.4 322,110 - MPMX19_00317 0.74 -0.3 322,110 - MPMX19_00317 0.74 +0.4 322,110 - MPMX19_00317 0.74 -2.3 322,110 - MPMX19_00317 0.74 -0.2 322,110 - MPMX19_00317 0.74 -1.7 322,110 - MPMX19_00317 0.74 -0.4 322,110 - MPMX19_00317 0.74 -0.9 322,110 - MPMX19_00317 0.74 -0.9 322,448 + -1.2 322,448 + -1.2 322,448 + -1.2 322,448 + -0.9 322,448 + -0.5 322,448 + +0.4 322,448 + +1.4 322,448 + -0.9 322,448 + -2.5 322,448 + -1.2 322,448 + -0.6 322,448 + -0.3 322,448 + -1.2 322,448 + +0.7 322,448 + -0.2 322,448 + -0.2 322,448 + +0.1 322,448 + -1.7 322,448 + +0.2 322,448 + -0.2 322,448 + -0.9 322,449 - +0.1 322,449 - +0.6 322,449 - +0.1 322,449 - -1.9 322,449 - -1.0 322,449 - -1.3 322,449 - +0.6 322,449 - -1.0 322,449 - -0.2 322,449 - -1.2 322,449 - -1.0 322,449 - -1.5 322,449 - +1.7 322,449 - -1.2 322,449 - -1.2 322,449 - -0.7 322,449 - +1.1 322,449 - -0.2 322,449 - -0.2 322,449 - -0.3 322,449 - +0.4 322,449 - -1.4 322,449 - -0.9 322,600 + -0.9 322,600 + +1.0 322,600 + -1.7 322,601 - -0.6 322,601 - -1.9 322,601 - +0.3 322,601 - -0.6 322,601 - -0.6 322,690 + MPMX19_00318 0.10 +0.8 322,690 + MPMX19_00318 0.10 +0.6 322,690 + MPMX19_00318 0.10 -0.9 322,690 + MPMX19_00318 0.10 -0.9 322,690 + MPMX19_00318 0.10 -2.2 322,690 + MPMX19_00318 0.10 -0.6 322,690 + MPMX19_00318 0.10 -2.6 322,690 + MPMX19_00318 0.10 +0.1 322,690 + MPMX19_00318 0.10 -2.1 322,691 - MPMX19_00318 0.10 -0.1 322,691 - MPMX19_00318 0.10 -1.3 322,691 - MPMX19_00318 0.10 -1.9 322,691 - MPMX19_00318 0.10 +0.4 322,691 - MPMX19_00318 0.10 -0.9 322,691 - MPMX19_00318 0.10 -0.9 322,691 - MPMX19_00318 0.10 -0.7 322,691 - MPMX19_00318 0.10 -0.2 322,691 - MPMX19_00318 0.10 -0.9 322,691 - MPMX19_00318 0.10 -1.3 322,691 - MPMX19_00318 0.10 +0.8 322,691 - MPMX19_00318 0.10 -0.2 322,691 - MPMX19_00318 0.10 -0.6 323,070 + MPMX19_00318 0.39 -2.0 323,071 - MPMX19_00318 0.39 -2.0 323,071 - MPMX19_00318 0.39 -1.6 323,793 + -0.6 323,793 + +0.7 323,793 + -1.6 323,793 + +1.3 323,793 + +0.4 323,793 + -0.2 323,793 + -0.9 323,793 + +0.5 323,793 + -0.9 323,793 + +0.4 323,793 + -1.4 323,794 - -1.2 323,794 - -1.1 323,794 - -1.8 323,794 - -0.2 323,794 - +1.1 323,794 - -0.6 323,794 - +1.4 323,794 - -0.6 323,794 - +0.1 323,794 - -0.2 323,794 - -1.6 323,794 - -0.9 323,794 - -0.8 323,816 - +0.1 323,816 - -0.6 323,912 - -0.7 324,194 + MPMX19_00319 0.45 -1.6 324,485 + +0.1 324,485 + -0.6 324,485 + -0.7 324,485 + -0.2 324,485 + -0.3 324,485 + -0.9 324,485 + -0.9 324,485 + -1.2 324,485 + +0.8 324,485 + -0.9 324,485 + +0.4 324,485 + -0.6 324,486 - -0.6 324,486 - -1.6 324,486 - -0.3 324,486 - -0.6 324,486 - -0.6 324,486 - -1.0 324,486 - -2.1 324,486 - -0.3 324,486 - -0.6 324,486 - -2.4 324,486 - +2.4 324,486 - +1.4 324,486 - +0.7 324,487 + +0.1 324,488 - -1.7 324,488 - -1.2 324,586 + -0.2 324,586 + +0.6 324,587 - -1.3 324,587 - +0.1 324,587 - -0.9 324,600 + +0.4 324,600 + -1.5 324,600 + +0.4 324,600 + -0.7 324,600 + -0.9 324,600 + +0.4 324,601 - -0.2 324,601 - -1.9 324,601 - -1.4 324,601 - -0.2 324,601 - +0.2 324,601 - -0.6 324,601 - +1.0 324,601 - -2.0 324,601 - -0.1 324,601 - -0.9 324,652 + +0.8 324,653 - -0.5 324,653 - +0.4
Or see this region's nucleotide sequence