Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00183

Experiment: NF_with10percent_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00181 and MPMX19_00182 are separated by 74 nucleotidesMPMX19_00182 and MPMX19_00183 overlap by 1 nucleotidesMPMX19_00183 and MPMX19_00184 are separated by 252 nucleotides MPMX19_00181: MPMX19_00181 - hypothetical protein, at 191,224 to 191,490 _00181 MPMX19_00182: MPMX19_00182 - hypothetical protein, at 191,565 to 192,326 _00182 MPMX19_00183: MPMX19_00183 - hypothetical protein, at 192,326 to 192,571 _00183 MPMX19_00184: MPMX19_00184 - hypothetical protein, at 192,824 to 193,495 _00184 Position (kb) 192 193Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 191.631 kb on + strandat 191.632 kb on - strandat 191.674 kb on - strand, within MPMX19_00182at 191.714 kb on - strand, within MPMX19_00182at 191.714 kb on - strand, within MPMX19_00182at 191.770 kb on + strand, within MPMX19_00182at 191.840 kb on + strand, within MPMX19_00182at 191.840 kb on + strand, within MPMX19_00182at 192.600 kb on + strandat 192.600 kb on + strandat 192.600 kb on + strandat 192.600 kb on + strandat 192.600 kb on + strandat 192.600 kb on + strandat 192.601 kb on - strandat 192.601 kb on - strandat 192.601 kb on - strandat 192.601 kb on - strandat 192.601 kb on - strandat 192.676 kb on + strandat 192.723 kb on + strandat 192.724 kb on - strandat 192.724 kb on - strandat 192.786 kb on + strandat 192.787 kb on - strandat 192.804 kb on + strandat 192.881 kb on + strandat 192.990 kb on + strand, within MPMX19_00184at 192.991 kb on - strand, within MPMX19_00184at 193.052 kb on - strand, within MPMX19_00184at 193.068 kb on - strand, within MPMX19_00184at 193.084 kb on - strand, within MPMX19_00184at 193.084 kb on - strand, within MPMX19_00184at 193.172 kb on + strand, within MPMX19_00184at 193.173 kb on - strand, within MPMX19_00184at 193.176 kb on + strand, within MPMX19_00184at 193.242 kb on + strand, within MPMX19_00184at 193.242 kb on + strand, within MPMX19_00184at 193.243 kb on - strand, within MPMX19_00184at 193.243 kb on - strand, within MPMX19_00184at 193.243 kb on - strand, within MPMX19_00184at 193.289 kb on - strand, within MPMX19_00184at 193.309 kb on - strand, within MPMX19_00184at 193.361 kb on + strand, within MPMX19_00184at 193.362 kb on - strand, within MPMX19_00184at 193.436 kb on + strandat 193.436 kb on + strandat 193.436 kb on + strandat 193.436 kb on + strandat 193.436 kb on + strandat 193.436 kb on + strandat 193.436 kb on + strandat 193.436 kb on + strandat 193.437 kb on - strandat 193.437 kb on - strandat 193.437 kb on - strandat 193.437 kb on - strandat 193.445 kb on + strandat 193.445 kb on + strandat 193.445 kb on + strandat 193.445 kb on + strandat 193.446 kb on - strandat 193.446 kb on - strandat 193.446 kb on - strandat 193.446 kb on - strandat 193.446 kb on - strandat 193.458 kb on - strandat 193.515 kb on + strandat 193.515 kb on + strandat 193.515 kb on + strandat 193.516 kb on - strandat 193.516 kb on - strandat 193.516 kb on - strandat 193.516 kb on - strandat 193.553 kb on + strandat 193.553 kb on + strandat 193.554 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
remove
191,631 + -0.3
191,632 - +0.4
191,674 - MPMX19_00182 0.14 -0.3
191,714 - MPMX19_00182 0.20 -0.9
191,714 - MPMX19_00182 0.20 -2.7
191,770 + MPMX19_00182 0.27 -2.1
191,840 + MPMX19_00182 0.36 +0.3
191,840 + MPMX19_00182 0.36 -0.7
192,600 + -0.3
192,600 + -0.7
192,600 + -1.1
192,600 + -0.3
192,600 + -1.0
192,600 + -0.9
192,601 - +0.6
192,601 - -0.6
192,601 - +0.1
192,601 - -1.8
192,601 - -2.9
192,676 + -0.3
192,723 + +0.3
192,724 - -0.1
192,724 - -0.4
192,786 + +3.0
192,787 - +1.6
192,804 + -0.1
192,881 + -0.3
192,990 + MPMX19_00184 0.25 +1.0
192,991 - MPMX19_00184 0.25 +0.6
193,052 - MPMX19_00184 0.34 -1.1
193,068 - MPMX19_00184 0.36 -0.1
193,084 - MPMX19_00184 0.39 -0.7
193,084 - MPMX19_00184 0.39 -0.3
193,172 + MPMX19_00184 0.52 +0.9
193,173 - MPMX19_00184 0.52 +0.1
193,176 + MPMX19_00184 0.52 +0.7
193,242 + MPMX19_00184 0.62 +0.1
193,242 + MPMX19_00184 0.62 +1.3
193,243 - MPMX19_00184 0.62 +0.2
193,243 - MPMX19_00184 0.62 -0.5
193,243 - MPMX19_00184 0.62 -1.7
193,289 - MPMX19_00184 0.69 -0.5
193,309 - MPMX19_00184 0.72 -0.1
193,361 + MPMX19_00184 0.80 -1.1
193,362 - MPMX19_00184 0.80 -0.6
193,436 + +0.3
193,436 + -0.7
193,436 + +1.3
193,436 + -2.6
193,436 + +0.7
193,436 + -1.3
193,436 + -0.8
193,436 + +0.3
193,437 - +0.8
193,437 - -0.5
193,437 - -1.3
193,437 - +0.1
193,445 + -0.8
193,445 + +0.4
193,445 + -1.0
193,445 + -0.4
193,446 - -1.5
193,446 - -0.9
193,446 - +0.1
193,446 - +0.5
193,446 - -2.5
193,458 - -0.5
193,515 + -0.7
193,515 + +0.7
193,515 + -0.9
193,516 - -0.5
193,516 - +0.3
193,516 - +1.3
193,516 - -0.0
193,553 + +0.1
193,553 + -1.3
193,554 - +0.9

Or see this region's nucleotide sequence