Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06723 and MPMX19_06724 are separated by 3 nucleotides MPMX19_06724 and MPMX19_06725 are separated by 97 nucleotides MPMX19_06725 and MPMX19_06726 overlap by 4 nucleotides MPMX19_06726 and MPMX19_06727 are separated by 14 nucleotides
MPMX19_06723: MPMX19_06723 - hypothetical protein, at 297,466 to 300,912
_06723
MPMX19_06724: MPMX19_06724 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 300,916 to 301,467
_06724
MPMX19_06725: MPMX19_06725 - dTDP-glucose 4,6-dehydratase 2, at 301,565 to 302,632
_06725
MPMX19_06726: MPMX19_06726 - dTDP-4-dehydrorhamnose reductase, at 302,629 to 303,531
_06726
MPMX19_06727: MPMX19_06727 - Glucose-1-phosphate thymidylyltransferase 1, at 303,546 to 304,409
_06727
Position (kb) 301
302
303 Strain fitness (log2 ratio) -2
-1
0
1
2 at 300.667 kb on + strand at 300.667 kb on + strand at 300.787 kb on + strand at 300.787 kb on + strand at 300.787 kb on + strand at 302.585 kb on + strand at 302.585 kb on + strand at 302.585 kb on + strand at 302.585 kb on + strand at 302.585 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 300,667 + -0.2 300,667 + +0.4 300,787 + +1.1 300,787 + -0.9 300,787 + -0.2 302,585 + -1.6 302,585 + -0.7 302,585 + +2.0 302,585 + -1.8 302,585 + +0.5
Or see this region's nucleotide sequence