Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06388

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06387 and MPMX19_06388 are separated by 9 nucleotidesMPMX19_06388 and MPMX19_06389 are separated by 51 nucleotidesMPMX19_06389 and MPMX19_06390 overlap by 11 nucleotides MPMX19_06387: MPMX19_06387 - hypothetical protein, at 154,535 to 155,488 _06387 MPMX19_06388: MPMX19_06388 - hypothetical protein, at 155,498 to 156,823 _06388 MPMX19_06389: MPMX19_06389 - hypothetical protein, at 156,875 to 157,048 _06389 MPMX19_06390: MPMX19_06390 - hypothetical protein, at 157,038 to 158,255 _06390 Position (kb) 155 156 157Strain fitness (log2 ratio) -2 -1 0 1at 154.737 kb on + strand, within MPMX19_06387at 154.737 kb on + strand, within MPMX19_06387at 154.737 kb on + strand, within MPMX19_06387at 154.737 kb on + strand, within MPMX19_06387at 154.737 kb on + strand, within MPMX19_06387at 154.828 kb on + strand, within MPMX19_06387at 154.828 kb on + strand, within MPMX19_06387at 154.829 kb on - strand, within MPMX19_06387at 155.169 kb on + strand, within MPMX19_06387at 155.274 kb on - strand, within MPMX19_06387at 155.349 kb on + strand, within MPMX19_06387at 155.349 kb on + strand, within MPMX19_06387at 155.350 kb on - strand, within MPMX19_06387at 155.350 kb on - strand, within MPMX19_06387at 155.350 kb on - strand, within MPMX19_06387at 155.350 kb on - strand, within MPMX19_06387at 155.379 kb on + strand, within MPMX19_06387at 155.379 kb on + strand, within MPMX19_06387at 155.380 kb on - strand, within MPMX19_06387at 155.421 kb on + strandat 155.421 kb on + strandat 155.422 kb on - strandat 155.422 kb on - strandat 155.422 kb on - strandat 155.754 kb on + strand, within MPMX19_06388at 155.754 kb on + strand, within MPMX19_06388at 155.754 kb on + strand, within MPMX19_06388at 155.755 kb on - strand, within MPMX19_06388at 155.755 kb on - strand, within MPMX19_06388at 155.755 kb on - strand, within MPMX19_06388at 155.755 kb on - strand, within MPMX19_06388at 155.755 kb on - strand, within MPMX19_06388at 156.129 kb on + strand, within MPMX19_06388at 156.192 kb on + strand, within MPMX19_06388at 156.192 kb on + strand, within MPMX19_06388at 156.193 kb on - strand, within MPMX19_06388at 156.193 kb on - strand, within MPMX19_06388at 156.222 kb on + strand, within MPMX19_06388at 156.222 kb on + strand, within MPMX19_06388at 156.222 kb on + strand, within MPMX19_06388at 156.222 kb on + strand, within MPMX19_06388at 156.222 kb on + strand, within MPMX19_06388at 156.222 kb on + strand, within MPMX19_06388at 156.222 kb on + strand, within MPMX19_06388at 156.222 kb on + strand, within MPMX19_06388at 156.222 kb on + strand, within MPMX19_06388at 156.223 kb on - strand, within MPMX19_06388at 156.223 kb on - strand, within MPMX19_06388at 156.223 kb on - strand, within MPMX19_06388at 156.223 kb on - strand, within MPMX19_06388at 156.223 kb on - strand, within MPMX19_06388at 156.223 kb on - strand, within MPMX19_06388at 156.223 kb on - strand, within MPMX19_06388at 156.223 kb on - strand, within MPMX19_06388at 156.393 kb on + strand, within MPMX19_06388at 156.394 kb on - strand, within MPMX19_06388at 156.426 kb on + strand, within MPMX19_06388at 156.426 kb on + strand, within MPMX19_06388at 156.426 kb on + strand, within MPMX19_06388at 156.426 kb on + strand, within MPMX19_06388at 156.427 kb on - strand, within MPMX19_06388at 156.427 kb on - strand, within MPMX19_06388at 156.427 kb on - strand, within MPMX19_06388at 156.427 kb on - strand, within MPMX19_06388at 156.427 kb on - strand, within MPMX19_06388at 156.427 kb on - strand, within MPMX19_06388at 156.519 kb on + strand, within MPMX19_06388at 156.519 kb on + strand, within MPMX19_06388at 156.519 kb on + strand, within MPMX19_06388at 156.519 kb on + strand, within MPMX19_06388at 156.519 kb on + strand, within MPMX19_06388at 156.519 kb on + strand, within MPMX19_06388at 156.520 kb on - strand, within MPMX19_06388at 156.520 kb on - strand, within MPMX19_06388at 156.520 kb on - strand, within MPMX19_06388at 156.520 kb on - strand, within MPMX19_06388at 156.651 kb on + strand, within MPMX19_06388at 156.651 kb on + strand, within MPMX19_06388at 156.651 kb on + strand, within MPMX19_06388at 156.651 kb on + strand, within MPMX19_06388at 156.651 kb on + strand, within MPMX19_06388at 156.651 kb on + strand, within MPMX19_06388at 156.652 kb on - strand, within MPMX19_06388at 156.652 kb on - strand, within MPMX19_06388at 156.652 kb on - strand, within MPMX19_06388at 156.652 kb on - strand, within MPMX19_06388at 156.652 kb on - strand, within MPMX19_06388at 156.652 kb on - strand, within MPMX19_06388at 156.652 kb on - strand, within MPMX19_06388at 156.652 kb on - strand, within MPMX19_06388at 156.717 kb on + strandat 156.717 kb on + strandat 156.718 kb on - strandat 156.718 kb on - strandat 156.718 kb on - strandat 156.718 kb on - strandat 156.795 kb on + strandat 156.795 kb on + strandat 156.795 kb on + strandat 156.795 kb on + strandat 156.796 kb on - strandat 156.796 kb on - strandat 157.075 kb on + strandat 157.075 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.145 kb on - strandat 157.368 kb on + strand, within MPMX19_06390at 157.368 kb on + strand, within MPMX19_06390at 157.368 kb on + strand, within MPMX19_06390at 157.369 kb on - strand, within MPMX19_06390at 157.595 kb on - strand, within MPMX19_06390at 157.743 kb on + strand, within MPMX19_06390at 157.744 kb on - strand, within MPMX19_06390

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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154,737 + MPMX19_06387 0.21 -1.4
154,737 + MPMX19_06387 0.21 -1.0
154,737 + MPMX19_06387 0.21 +0.6
154,737 + MPMX19_06387 0.21 +1.0
154,737 + MPMX19_06387 0.21 +0.1
154,828 + MPMX19_06387 0.31 -0.4
154,828 + MPMX19_06387 0.31 +0.0
154,829 - MPMX19_06387 0.31 -1.0
155,169 + MPMX19_06387 0.66 -0.4
155,274 - MPMX19_06387 0.77 -0.2
155,349 + MPMX19_06387 0.85 -1.3
155,349 + MPMX19_06387 0.85 -0.6
155,350 - MPMX19_06387 0.85 +0.2
155,350 - MPMX19_06387 0.85 +0.0
155,350 - MPMX19_06387 0.85 +0.3
155,350 - MPMX19_06387 0.85 -1.4
155,379 + MPMX19_06387 0.88 +0.0
155,379 + MPMX19_06387 0.88 -0.4
155,380 - MPMX19_06387 0.89 -2.3
155,421 + -0.4
155,421 + -1.1
155,422 - -2.1
155,422 - -0.6
155,422 - +0.3
155,754 + MPMX19_06388 0.19 -2.2
155,754 + MPMX19_06388 0.19 +1.0
155,754 + MPMX19_06388 0.19 +0.6
155,755 - MPMX19_06388 0.19 -0.5
155,755 - MPMX19_06388 0.19 -0.4
155,755 - MPMX19_06388 0.19 -0.4
155,755 - MPMX19_06388 0.19 +0.3
155,755 - MPMX19_06388 0.19 -1.0
156,129 + MPMX19_06388 0.48 -0.2
156,192 + MPMX19_06388 0.52 -0.7
156,192 + MPMX19_06388 0.52 -0.4
156,193 - MPMX19_06388 0.52 +0.0
156,193 - MPMX19_06388 0.52 -1.7
156,222 + MPMX19_06388 0.55 -0.4
156,222 + MPMX19_06388 0.55 -0.1
156,222 + MPMX19_06388 0.55 -0.4
156,222 + MPMX19_06388 0.55 -0.5
156,222 + MPMX19_06388 0.55 -0.1
156,222 + MPMX19_06388 0.55 -1.2
156,222 + MPMX19_06388 0.55 +0.0
156,222 + MPMX19_06388 0.55 -0.4
156,222 + MPMX19_06388 0.55 -0.4
156,223 - MPMX19_06388 0.55 -0.4
156,223 - MPMX19_06388 0.55 +0.0
156,223 - MPMX19_06388 0.55 -1.0
156,223 - MPMX19_06388 0.55 -2.1
156,223 - MPMX19_06388 0.55 -0.2
156,223 - MPMX19_06388 0.55 -1.2
156,223 - MPMX19_06388 0.55 -1.2
156,223 - MPMX19_06388 0.55 +0.6
156,393 + MPMX19_06388 0.67 +0.5
156,394 - MPMX19_06388 0.68 -0.4
156,426 + MPMX19_06388 0.70 +0.9
156,426 + MPMX19_06388 0.70 -1.0
156,426 + MPMX19_06388 0.70 -0.4
156,426 + MPMX19_06388 0.70 -0.1
156,427 - MPMX19_06388 0.70 -1.3
156,427 - MPMX19_06388 0.70 -2.3
156,427 - MPMX19_06388 0.70 -0.7
156,427 - MPMX19_06388 0.70 -1.0
156,427 - MPMX19_06388 0.70 +0.0
156,427 - MPMX19_06388 0.70 +0.0
156,519 + MPMX19_06388 0.77 +0.9
156,519 + MPMX19_06388 0.77 -2.3
156,519 + MPMX19_06388 0.77 +0.6
156,519 + MPMX19_06388 0.77 -1.6
156,519 + MPMX19_06388 0.77 -2.1
156,519 + MPMX19_06388 0.77 -0.2
156,520 - MPMX19_06388 0.77 -0.9
156,520 - MPMX19_06388 0.77 -1.0
156,520 - MPMX19_06388 0.77 -1.0
156,520 - MPMX19_06388 0.77 -1.1
156,651 + MPMX19_06388 0.87 +1.0
156,651 + MPMX19_06388 0.87 +0.0
156,651 + MPMX19_06388 0.87 -0.7
156,651 + MPMX19_06388 0.87 -0.7
156,651 + MPMX19_06388 0.87 +0.0
156,651 + MPMX19_06388 0.87 +1.2
156,652 - MPMX19_06388 0.87 -0.3
156,652 - MPMX19_06388 0.87 -1.6
156,652 - MPMX19_06388 0.87 -1.6
156,652 - MPMX19_06388 0.87 -1.0
156,652 - MPMX19_06388 0.87 -1.4
156,652 - MPMX19_06388 0.87 +0.6
156,652 - MPMX19_06388 0.87 -2.6
156,652 - MPMX19_06388 0.87 +0.2
156,717 + -1.2
156,717 + -1.3
156,718 - -0.4
156,718 - -1.6
156,718 - -2.2
156,718 - -0.4
156,795 + -1.6
156,795 + -1.9
156,795 + -0.7
156,795 + +0.4
156,796 - -2.2
156,796 - -1.0
157,075 + +0.6
157,075 + +0.0
157,108 + -0.9
157,108 + -1.0
157,108 + -1.4
157,108 + -1.8
157,108 + -0.4
157,108 + -0.8
157,108 + -0.9
157,108 + +0.0
157,108 + -1.4
157,108 + -0.6
157,109 - -1.5
157,109 - -0.7
157,109 - -1.4
157,109 - -0.6
157,109 - -0.7
157,109 - -1.0
157,109 - -1.0
157,109 - -0.7
157,109 - -2.5
157,109 - +0.0
157,145 - -1.4
157,368 + MPMX19_06390 0.27 +0.6
157,368 + MPMX19_06390 0.27 -0.7
157,368 + MPMX19_06390 0.27 +0.4
157,369 - MPMX19_06390 0.27 +1.0
157,595 - MPMX19_06390 0.46 -0.2
157,743 + MPMX19_06390 0.58 -0.7
157,744 - MPMX19_06390 0.58 -2.5

Or see this region's nucleotide sequence