Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06324

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NF_with10percent_fullN
				remove
87,222	+	MPMX19_06323	0.75	-2.0
87,222	+	MPMX19_06323	0.75	-0.6
87,222	+	MPMX19_06323	0.75	-0.3
87,222	+	MPMX19_06323	0.75	+0.8
87,222	+	MPMX19_06323	0.75	+0.0
87,222	+	MPMX19_06323	0.75	-0.6
87,222	+	MPMX19_06323	0.75	-1.2
87,222	+	MPMX19_06323	0.75	-1.4
87,223	-	MPMX19_06323	0.75	-0.4
87,223	-	MPMX19_06323	0.75	+1.0
87,223	-	MPMX19_06323	0.75	+0.0
87,223	-	MPMX19_06323	0.75	+0.0
87,223	-	MPMX19_06323	0.75	-0.8
87,223	-	MPMX19_06323	0.75	-2.6
87,223	-	MPMX19_06323	0.75	+1.0
87,289	+	MPMX19_06323	0.77	-0.6
87,289	+	MPMX19_06323	0.77	-1.6
87,289	+	MPMX19_06323	0.77	+0.2
87,289	+	MPMX19_06323	0.77	+2.1
87,289	+	MPMX19_06323	0.77	-1.1
87,289	+	MPMX19_06323	0.77	-0.7
87,290	-	MPMX19_06323	0.77	-1.4
87,290	-	MPMX19_06323	0.77	+0.0
87,290	-	MPMX19_06323	0.77	-1.4
87,290	-	MPMX19_06323	0.77	-0.4
87,290	-	MPMX19_06323	0.77	-1.7
87,475	+	MPMX19_06323	0.82	+1.3
87,476	-	MPMX19_06323	0.82	-1.0
87,478	+	MPMX19_06323	0.82	-1.0
87,478	+	MPMX19_06323	0.82	+0.3
87,478	+	MPMX19_06323	0.82	-1.0
87,478	+	MPMX19_06323	0.82	-0.4
87,478	+	MPMX19_06323	0.82	-0.3
87,478	+	MPMX19_06323	0.82	+0.0
87,479	-	MPMX19_06323	0.82	-1.2
87,479	-	MPMX19_06323	0.82	-0.8
87,479	-	MPMX19_06323	0.82	-1.7
87,479	-	MPMX19_06323	0.82	-1.0
87,567	+	MPMX19_06323	0.84	-0.2
87,568	-	MPMX19_06323	0.84	-0.7
87,568	-	MPMX19_06323	0.84	-1.8
87,745	-	MPMX19_06323	0.88	-0.6
87,745	-	MPMX19_06323	0.88	+0.8
87,745	-	MPMX19_06323	0.88	-1.4
87,757	+	MPMX19_06323	0.89	-1.2
87,757	+	MPMX19_06323	0.89	-0.8
87,772	+	MPMX19_06323	0.89	+0.6
87,772	+	MPMX19_06323	0.89	+0.0
87,772	+	MPMX19_06323	0.89	-0.4
87,773	-	MPMX19_06323	0.89	-1.2
87,773	-	MPMX19_06323	0.89	+0.0
87,773	-	MPMX19_06323	0.89	-1.0
87,773	-	MPMX19_06323	0.89	-1.4
87,782	+	MPMX19_06323	0.89	-1.6
87,783	-	MPMX19_06323	0.89	+1.3
87,793	+	MPMX19_06323	0.90	-0.2
87,794	-	MPMX19_06323	0.90	-0.4
87,794	-	MPMX19_06323	0.90	-0.3
87,794	-	MPMX19_06323	0.90	-1.4
87,794	-	MPMX19_06323	0.90	-0.7
87,810	+			-2.2
87,810	+			+0.2
87,811	-			-0.2
87,811	-			+0.6
87,820	+			-1.7
87,820	+			-0.7
87,820	+			-1.4
87,820	+			-3.1
87,821	-			+0.2
87,821	-			+0.3
87,821	-			-0.7
87,821	-			-1.2
87,821	-			-1.2
87,821	-			-0.4
87,821	-			+1.0
87,821	-			+0.6
87,821	-			+0.8
87,888	+			-1.2
87,888	+			-2.1
87,888	+			-0.4
87,888	+			-1.1
87,889	-			+0.4
87,889	-			-0.6
88,025	+			-1.6
88,025	+			-0.7
88,026	-			-0.6
88,026	-			-1.8
88,029	-			-0.3
88,054	+			-0.6
88,054	+			+0.0
88,054	+			-1.1
88,054	+			-3.2
88,055	-			-0.6
88,055	-			+2.2
88,055	-			-1.4
88,055	-			-1.0
88,055	-			-1.3
88,132	+			+0.2
88,132	+			-1.8
88,133	-			-1.2
88,133	-			-0.8
88,133	-			+0.3
88,133	-			-0.7
88,133	-			-1.2
88,133	-			-1.0
88,133	-			-0.8
88,159	+			+0.0
88,160	-			+0.3
88,179	+			-0.2
88,179	+			-2.3
88,179	+			-0.0
88,179	+			+0.6
88,179	+			+0.0
88,179	+			-0.7
88,179	+			-1.6
88,179	+			-0.9
88,179	+			+1.6
88,179	+			+0.0
88,179	+			+1.0
88,179	+			-0.7
88,179	+			-1.5
88,179	+			+0.2
88,179	+			+1.0
88,179	+			-0.4
88,179	+			-0.2
88,179	+			-0.7
88,179	+			-0.8
88,179	+			+1.3
88,179	+			+0.6
88,179	+			-0.3
88,179	+			+0.6
88,179	+			+0.4
88,179	+			-1.6
88,179	+			+0.4
88,179	+			-0.2
88,179	+			+1.0
88,179	+			-1.0
88,179	+			-0.7
88,180	-			-1.4
88,180	-			-1.6
88,180	-			-0.4
88,180	-			+0.0
88,180	-			-0.6
88,180	-			-0.8
88,180	-			-0.7
88,180	-			-0.7
88,180	-			-0.4
88,180	-			-0.4
88,180	-			-2.0
88,180	-			-1.3
88,180	-			-2.3
88,180	-			+1.9
88,180	-			+0.4
88,180	-			-1.0
88,180	-			-1.8
88,180	-			+0.6
88,180	-			-1.4
88,180	-			-2.5
88,180	-			+0.2
88,180	-			-1.0
88,180	-			-0.4
88,180	-			-0.4
88,180	-			-0.4
88,180	-			-0.7
88,180	-			-0.7
88,180	-			-0.2
88,180	-			-0.1
88,180	-			-2.2
88,180	-			-0.7
88,180	-			+1.1
88,180	-			+0.6
88,180	-			-0.4
88,180	-			-2.0
88,180	-			-0.7
88,180	-			+0.3
88,180	-			-1.6
88,180	-			-0.6
88,180	-			-0.7
88,200	+			-0.7
88,201	-			-0.8
88,201	-			-0.7
88,250	+			+0.3
88,250	+			-2.3
88,251	-			+0.0
88,331	+	MPMX19_06324	0.17	+0.4
88,331	+	MPMX19_06324	0.17	-0.4
88,331	+	MPMX19_06324	0.17	-1.2
88,332	-	MPMX19_06324	0.17	+1.3
88,332	-	MPMX19_06324	0.17	-1.0
88,452	+	MPMX19_06324	0.32	-0.3
88,485	+	MPMX19_06324	0.36	-0.6
88,485	+	MPMX19_06324	0.36	+0.3
88,485	+	MPMX19_06324	0.36	-1.2
88,485	+	MPMX19_06324	0.36	-0.7
88,485	+	MPMX19_06324	0.36	-0.4
88,485	+	MPMX19_06324	0.36	+0.2
88,486	-	MPMX19_06324	0.36	-0.7
88,508	+	MPMX19_06324	0.39	-2.4
88,508	+	MPMX19_06324	0.39	-0.8
88,508	+	MPMX19_06324	0.39	+1.6
88,508	+	MPMX19_06324	0.39	-0.4
88,508	+	MPMX19_06324	0.39	+0.5
88,509	-	MPMX19_06324	0.39	+1.2
88,509	-	MPMX19_06324	0.39	-1.2
88,509	-	MPMX19_06324	0.39	+0.9
88,530	+	MPMX19_06324	0.42	-0.8
88,530	+	MPMX19_06324	0.42	-0.4
88,531	-	MPMX19_06324	0.42	-0.9
88,626	+	MPMX19_06324	0.54	-0.1
88,626	+	MPMX19_06324	0.54	-1.0
88,626	+	MPMX19_06324	0.54	-0.4
88,626	+	MPMX19_06324	0.54	-1.2
88,627	-	MPMX19_06324	0.54	+1.2
88,627	-	MPMX19_06324	0.54	-1.7
88,627	-	MPMX19_06324	0.54	-0.6
88,627	-	MPMX19_06324	0.54	+1.6
88,627	-	MPMX19_06324	0.54	-0.8
88,627	-	MPMX19_06324	0.54	-0.9
88,627	-	MPMX19_06324	0.54	+0.0
88,627	-	MPMX19_06324	0.54	-1.1
88,627	-	MPMX19_06324	0.54	+0.4
88,627	-	MPMX19_06324	0.54	-1.1
88,727	+	MPMX19_06324	0.67	-1.9
88,728	-	MPMX19_06324	0.67	-0.7
88,728	-	MPMX19_06324	0.67	-0.1
88,759	+	MPMX19_06324	0.71	-1.6
88,759	+	MPMX19_06324	0.71	-0.7
88,759	+	MPMX19_06324	0.71	+0.6
88,760	-	MPMX19_06324	0.71	-0.4
88,797	+	MPMX19_06324	0.76	+1.6
88,797	+	MPMX19_06324	0.76	-1.4
88,797	+	MPMX19_06324	0.76	+0.6
88,797	+	MPMX19_06324	0.76	+0.6
88,797	+	MPMX19_06324	0.76	-0.1
88,797	+	MPMX19_06324	0.76	-0.6
88,797	+	MPMX19_06324	0.76	-0.4
88,797	+	MPMX19_06324	0.76	-1.0
88,797	+	MPMX19_06324	0.76	+0.0
88,797	+	MPMX19_06324	0.76	-0.4
88,797	+	MPMX19_06324	0.76	-1.6
88,797	+	MPMX19_06324	0.76	-1.8
88,798	-	MPMX19_06324	0.76	-1.2
88,798	-	MPMX19_06324	0.76	-1.2
88,798	-	MPMX19_06324	0.76	-1.1
88,798	-	MPMX19_06324	0.76	-0.7
88,798	-	MPMX19_06324	0.76	-0.6
88,798	-	MPMX19_06324	0.76	-0.1
88,798	-	MPMX19_06324	0.76	+0.0
88,798	-	MPMX19_06324	0.76	-0.0
88,798	-	MPMX19_06324	0.76	-2.0
88,799	+	MPMX19_06324	0.76	-0.4
88,799	+	MPMX19_06324	0.76	+1.9
88,799	+	MPMX19_06324	0.76	-2.3
88,799	+	MPMX19_06324	0.76	-1.4
88,799	+	MPMX19_06324	0.76	-1.7
88,799	+	MPMX19_06324	0.76	-0.6
88,800	-	MPMX19_06324	0.76	-0.4
88,800	-	MPMX19_06324	0.76	-1.0
88,800	-	MPMX19_06324	0.76	+0.9
88,824	+	MPMX19_06324	0.79	+0.2
88,825	-	MPMX19_06324	0.79	-1.2
88,840	+	MPMX19_06324	0.81	-0.7
88,840	+	MPMX19_06324	0.81	+0.3
88,840	+	MPMX19_06324	0.81	+0.4
88,840	+	MPMX19_06324	0.81	-1.4
88,841	-	MPMX19_06324	0.81	-0.4
88,841	-	MPMX19_06324	0.81	+0.9
88,841	-	MPMX19_06324	0.81	-0.4
89,027	+			+0.3
89,027	+			-0.4
89,027	+			-0.4
89,163	+			+0.3
89,163	+			-1.0
89,163	+			-0.6
89,163	+			-1.6
89,164	-			-0.2
89,164	-			-0.7
89,164	-			+0.3
89,164	-			+1.0
89,164	-			-1.3
89,283	-	MPMX19_06325	0.10	-0.6
89,283	-	MPMX19_06325	0.10	-1.3
89,427	+	MPMX19_06325	0.15	+1.0
89,602	+	MPMX19_06325	0.21	+1.0
89,602	+	MPMX19_06325	0.21	-0.4
89,602	+	MPMX19_06325	0.21	-1.0
89,602	+	MPMX19_06325	0.21	-0.3
89,602	+	MPMX19_06325	0.21	-1.2
89,602	+	MPMX19_06325	0.21	+0.8
89,603	-	MPMX19_06325	0.21	-2.1
89,603	-	MPMX19_06325	0.21	+0.0
89,603	-	MPMX19_06325	0.21	+0.3
89,603	-	MPMX19_06325	0.21	-1.0
89,603	-	MPMX19_06325	0.21	-2.1
89,603	-	MPMX19_06325	0.21	+1.6
89,620	+	MPMX19_06325	0.22	-0.7
89,621	-	MPMX19_06325	0.22	-1.4
89,682	-	MPMX19_06325	0.24	-0.4
89,734	+	MPMX19_06325	0.25	-0.2
89,734	+	MPMX19_06325	0.25	+1.6
89,735	-	MPMX19_06325	0.25	-2.5

Or see this region's nucleotide sequence