Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06304

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06303 and MPMX19_06304 are separated by 55 nucleotidesMPMX19_06304 and MPMX19_06305 are separated by 38 nucleotidesMPMX19_06305 and MPMX19_06306 are separated by 161 nucleotidesMPMX19_06306 and MPMX19_06307 are separated by 60 nucleotides MPMX19_06303: MPMX19_06303 - hypothetical protein, at 68,549 to 69,277 _06303 MPMX19_06304: MPMX19_06304 - hypothetical protein, at 69,333 to 69,731 _06304 MPMX19_06305: MPMX19_06305 - hypothetical protein, at 69,770 to 70,318 _06305 MPMX19_06306: MPMX19_06306 - hypothetical protein, at 70,480 to 70,602 _06306 MPMX19_06307: MPMX19_06307 - hypothetical protein, at 70,663 to 71,856 _06307 Position (kb) 69 70Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 68.482 kb on + strandat 68.482 kb on + strandat 68.482 kb on + strandat 68.482 kb on + strandat 68.482 kb on + strandat 68.482 kb on + strandat 68.482 kb on + strandat 68.483 kb on - strandat 68.483 kb on - strandat 68.483 kb on - strandat 68.483 kb on - strandat 68.483 kb on - strandat 68.483 kb on - strandat 68.483 kb on - strandat 68.483 kb on - strandat 68.483 kb on - strandat 68.483 kb on - strandat 68.483 kb on - strandat 68.968 kb on + strand, within MPMX19_06303at 68.968 kb on + strand, within MPMX19_06303at 68.968 kb on + strand, within MPMX19_06303at 68.969 kb on - strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.111 kb on + strand, within MPMX19_06303at 69.253 kb on - strandat 69.253 kb on - strandat 69.253 kb on - strandat 69.253 kb on - strandat 69.744 kb on + strandat 69.744 kb on + strandat 70.002 kb on + strand, within MPMX19_06305at 70.002 kb on + strand, within MPMX19_06305at 70.003 kb on - strand, within MPMX19_06305at 70.329 kb on + strandat 70.329 kb on + strandat 70.330 kb on - strandat 70.371 kb on + strandat 70.385 kb on + strandat 70.386 kb on - strandat 70.388 kb on - strandat 70.459 kb on + strandat 70.501 kb on + strand, within MPMX19_06306at 70.502 kb on - strand, within MPMX19_06306at 70.502 kb on - strand, within MPMX19_06306at 70.518 kb on + strand, within MPMX19_06306at 70.519 kb on - strand, within MPMX19_06306at 70.558 kb on - strand, within MPMX19_06306at 70.559 kb on + strand, within MPMX19_06306at 70.560 kb on - strand, within MPMX19_06306at 70.593 kb on - strandat 70.624 kb on + strandat 70.635 kb on + strandat 70.636 kb on - strandat 70.636 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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68,482 + -1.7
68,482 + -1.7
68,482 + -1.4
68,482 + -1.4
68,482 + -0.9
68,482 + -0.7
68,482 + -0.4
68,483 - -0.2
68,483 - -1.0
68,483 - -0.8
68,483 - +0.0
68,483 - +2.6
68,483 - -3.0
68,483 - -1.2
68,483 - +0.6
68,483 - +0.6
68,483 - -0.4
68,483 - +1.0
68,968 + MPMX19_06303 0.57 -0.4
68,968 + MPMX19_06303 0.57 -0.4
68,968 + MPMX19_06303 0.57 +0.6
68,969 - MPMX19_06303 0.58 -0.9
69,096 + MPMX19_06303 0.75 -2.7
69,096 + MPMX19_06303 0.75 +0.0
69,096 + MPMX19_06303 0.75 -1.2
69,096 + MPMX19_06303 0.75 -1.0
69,096 + MPMX19_06303 0.75 -2.0
69,096 + MPMX19_06303 0.75 -1.0
69,096 + MPMX19_06303 0.75 -0.1
69,096 + MPMX19_06303 0.75 -1.2
69,096 + MPMX19_06303 0.75 -1.4
69,096 + MPMX19_06303 0.75 +0.0
69,096 + MPMX19_06303 0.75 +1.6
69,097 - MPMX19_06303 0.75 -0.3
69,097 - MPMX19_06303 0.75 +0.4
69,097 - MPMX19_06303 0.75 -1.2
69,097 - MPMX19_06303 0.75 -1.2
69,097 - MPMX19_06303 0.75 -0.6
69,097 - MPMX19_06303 0.75 -0.4
69,097 - MPMX19_06303 0.75 +0.0
69,097 - MPMX19_06303 0.75 -1.0
69,097 - MPMX19_06303 0.75 -1.4
69,097 - MPMX19_06303 0.75 -1.0
69,097 - MPMX19_06303 0.75 -1.6
69,097 - MPMX19_06303 0.75 -1.3
69,097 - MPMX19_06303 0.75 -2.3
69,111 + MPMX19_06303 0.77 +0.3
69,253 - +0.7
69,253 - -0.7
69,253 - +0.3
69,253 - +0.0
69,744 + -1.0
69,744 + +1.6
70,002 + MPMX19_06305 0.42 -2.2
70,002 + MPMX19_06305 0.42 -0.7
70,003 - MPMX19_06305 0.42 +0.8
70,329 + -0.5
70,329 + -0.4
70,330 - -0.7
70,371 + +0.7
70,385 + -0.7
70,386 - +0.3
70,388 - -0.0
70,459 + -0.2
70,501 + MPMX19_06306 0.17 +0.3
70,502 - MPMX19_06306 0.18 -1.0
70,502 - MPMX19_06306 0.18 +0.0
70,518 + MPMX19_06306 0.31 -1.2
70,519 - MPMX19_06306 0.32 -2.4
70,558 - MPMX19_06306 0.63 -0.7
70,559 + MPMX19_06306 0.64 +0.1
70,560 - MPMX19_06306 0.65 +0.5
70,593 - -0.7
70,624 + -0.4
70,635 + +0.0
70,636 - -0.5
70,636 - -0.5

Or see this region's nucleotide sequence