Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06175 and MPMX19_06176 are separated by 14 nucleotides MPMX19_06176 and MPMX19_06177 are separated by 3 nucleotides MPMX19_06177 and MPMX19_06178 overlap by 4 nucleotides
MPMX19_06175: MPMX19_06175 - hypothetical protein, at 364,852 to 366,042
_06175
MPMX19_06176: MPMX19_06176 - Cytochrome bo(3) ubiquinol oxidase subunit 1, at 366,057 to 368,054
_06176
MPMX19_06177: MPMX19_06177 - Cytochrome bo(3) ubiquinol oxidase subunit 3, at 368,058 to 368,717
_06177
MPMX19_06178: MPMX19_06178 - hypothetical protein, at 368,714 to 369,148
_06178
Position (kb) 366
367
368
369 Strain fitness (log2 ratio) -2
-1
0
1 at 365.465 kb on - strand, within MPMX19_06175 at 365.491 kb on + strand, within MPMX19_06175 at 365.548 kb on + strand, within MPMX19_06175 at 365.549 kb on - strand, within MPMX19_06175 at 366.190 kb on - strand at 366.207 kb on + strand at 366.943 kb on - strand, within MPMX19_06176 at 367.390 kb on - strand, within MPMX19_06176 at 367.390 kb on - strand, within MPMX19_06176 at 367.961 kb on + strand at 367.971 kb on + strand at 368.052 kb on + strand at 368.849 kb on + strand, within MPMX19_06178
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 365,465 - MPMX19_06175 0.51 +0.6 365,491 + MPMX19_06175 0.54 +0.3 365,548 + MPMX19_06175 0.58 -0.7 365,549 - MPMX19_06175 0.59 -1.0 366,190 - -1.0 366,207 + -1.0 366,943 - MPMX19_06176 0.44 +1.6 367,390 - MPMX19_06176 0.67 -0.7 367,390 - MPMX19_06176 0.67 -0.4 367,961 + -1.9 367,971 + -1.0 368,052 + -0.7 368,849 + MPMX19_06178 0.31 -0.4
Or see this region's nucleotide sequence