Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06168 and MPMX19_06169 are separated by 36 nucleotides MPMX19_06169 and MPMX19_06170 are separated by 507 nucleotides
MPMX19_06168: MPMX19_06168 - hypothetical protein, at 355,578 to 358,229
_06168
MPMX19_06169: MPMX19_06169 - hypothetical protein, at 358,266 to 358,820
_06169
MPMX19_06170: MPMX19_06170 - hypothetical protein, at 359,328 to 360,821
_06170
Position (kb) 358
359 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.588 kb on + strand, within MPMX19_06169 at 358.588 kb on + strand, within MPMX19_06169 at 358.622 kb on - strand, within MPMX19_06169 at 358.622 kb on - strand, within MPMX19_06169 at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.966 kb on + strand at 358.966 kb on + strand at 358.966 kb on + strand at 358.966 kb on + strand at 358.966 kb on + strand at 358.966 kb on + strand at 358.967 kb on - strand at 358.967 kb on - strand at 358.967 kb on - strand at 358.967 kb on - strand at 358.967 kb on - strand at 358.971 kb on + strand at 358.971 kb on + strand at 358.992 kb on + strand at 358.992 kb on + strand at 358.993 kb on - strand at 358.993 kb on - strand at 359.002 kb on + strand at 359.208 kb on + strand at 359.208 kb on + strand at 359.209 kb on - strand at 359.217 kb on + strand at 359.217 kb on + strand at 359.217 kb on + strand at 359.217 kb on + strand at 359.217 kb on + strand at 359.218 kb on - strand at 359.218 kb on - strand at 359.218 kb on - strand at 359.218 kb on - strand at 359.218 kb on - strand at 359.269 kb on + strand at 359.269 kb on + strand at 359.270 kb on - strand at 359.270 kb on - strand at 359.270 kb on - strand at 359.270 kb on - strand at 359.492 kb on + strand, within MPMX19_06170 at 359.493 kb on - strand, within MPMX19_06170 at 359.493 kb on - strand, within MPMX19_06170 at 359.493 kb on - strand, within MPMX19_06170 at 359.520 kb on + strand, within MPMX19_06170 at 359.520 kb on + strand, within MPMX19_06170 at 359.520 kb on + strand, within MPMX19_06170 at 359.521 kb on - strand, within MPMX19_06170 at 359.521 kb on - strand, within MPMX19_06170 at 359.521 kb on - strand, within MPMX19_06170 at 359.521 kb on - strand, within MPMX19_06170 at 359.667 kb on + strand, within MPMX19_06170 at 359.667 kb on + strand, within MPMX19_06170 at 359.667 kb on + strand, within MPMX19_06170 at 359.667 kb on + strand, within MPMX19_06170 at 359.667 kb on + strand, within MPMX19_06170 at 359.667 kb on + strand, within MPMX19_06170 at 359.667 kb on + strand, within MPMX19_06170 at 359.667 kb on + strand, within MPMX19_06170 at 359.668 kb on - strand, within MPMX19_06170 at 359.668 kb on - strand, within MPMX19_06170 at 359.668 kb on - strand, within MPMX19_06170 at 359.668 kb on - strand, within MPMX19_06170 at 359.668 kb on - strand, within MPMX19_06170 at 359.668 kb on - strand, within MPMX19_06170 at 359.668 kb on - strand, within MPMX19_06170 at 359.668 kb on - strand, within MPMX19_06170 at 359.668 kb on - strand, within MPMX19_06170 at 359.668 kb on - strand, within MPMX19_06170 at 359.707 kb on - strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 358,357 + MPMX19_06169 0.16 +0.3 358,357 + MPMX19_06169 0.16 +0.6 358,357 + MPMX19_06169 0.16 -0.4 358,357 + MPMX19_06169 0.16 +1.0 358,357 + MPMX19_06169 0.16 +0.6 358,357 + MPMX19_06169 0.16 -1.3 358,357 + MPMX19_06169 0.16 +0.6 358,357 + MPMX19_06169 0.16 +0.0 358,357 + MPMX19_06169 0.16 +1.6 358,358 - MPMX19_06169 0.17 +0.6 358,358 - MPMX19_06169 0.17 +0.6 358,358 - MPMX19_06169 0.17 +1.0 358,358 - MPMX19_06169 0.17 -0.4 358,358 - MPMX19_06169 0.17 +0.5 358,358 - MPMX19_06169 0.17 -0.4 358,358 - MPMX19_06169 0.17 -0.2 358,358 - MPMX19_06169 0.17 +1.0 358,358 - MPMX19_06169 0.17 -0.1 358,358 - MPMX19_06169 0.17 +0.4 358,358 - MPMX19_06169 0.17 +0.0 358,588 + MPMX19_06169 0.58 +1.0 358,588 + MPMX19_06169 0.58 +0.8 358,622 - MPMX19_06169 0.64 +0.9 358,622 - MPMX19_06169 0.64 -0.7 358,840 + -1.0 358,840 + -1.2 358,840 + -0.4 358,840 + -0.4 358,840 + -1.3 358,840 + -0.6 358,840 + +1.6 358,840 + -0.4 358,840 + +0.0 358,840 + -1.2 358,841 - -1.6 358,841 - -0.4 358,841 - +0.4 358,841 - -1.4 358,841 - -2.3 358,841 - -0.7 358,841 - +0.0 358,841 - +1.6 358,841 - +0.7 358,841 - -0.8 358,866 + +0.4 358,866 + +0.6 358,866 + +0.2 358,866 + -0.2 358,866 + -0.9 358,866 + -0.4 358,866 + +0.0 358,866 + -1.7 358,866 + +1.6 358,866 + +0.3 358,867 - -2.1 358,867 - -0.4 358,867 - +0.6 358,867 - -1.0 358,867 - -1.7 358,867 - -0.4 358,867 - -0.1 358,867 - -3.1 358,867 - -0.4 358,867 - -1.9 358,867 - +0.0 358,867 - +0.3 358,867 - -0.4 358,966 + +1.3 358,966 + -0.1 358,966 + +1.0 358,966 + -0.9 358,966 + +0.5 358,966 + -0.3 358,967 - -1.4 358,967 - -0.1 358,967 - +1.6 358,967 - -1.2 358,967 - -1.9 358,971 + -1.6 358,971 + -0.6 358,992 + -1.6 358,992 + -0.7 358,993 - +0.3 358,993 - +0.9 359,002 + +1.6 359,208 + +0.0 359,208 + +1.2 359,209 - -1.6 359,217 + -1.2 359,217 + +0.8 359,217 + -0.2 359,217 + -0.4 359,217 + -2.0 359,218 - -0.4 359,218 - -1.0 359,218 - -0.7 359,218 - -0.5 359,218 - -0.6 359,269 + -0.5 359,269 + -0.7 359,270 - +0.6 359,270 - -1.9 359,270 - +1.6 359,270 - -0.9 359,492 + MPMX19_06170 0.11 +1.6 359,493 - MPMX19_06170 0.11 +0.8 359,493 - MPMX19_06170 0.11 +1.6 359,493 - MPMX19_06170 0.11 -0.6 359,520 + MPMX19_06170 0.13 -1.4 359,520 + MPMX19_06170 0.13 -1.4 359,520 + MPMX19_06170 0.13 -1.7 359,521 - MPMX19_06170 0.13 +0.6 359,521 - MPMX19_06170 0.13 -0.4 359,521 - MPMX19_06170 0.13 -0.7 359,521 - MPMX19_06170 0.13 -0.4 359,667 + MPMX19_06170 0.23 -1.4 359,667 + MPMX19_06170 0.23 -0.2 359,667 + MPMX19_06170 0.23 -1.2 359,667 + MPMX19_06170 0.23 -0.5 359,667 + MPMX19_06170 0.23 +0.3 359,667 + MPMX19_06170 0.23 +0.6 359,667 + MPMX19_06170 0.23 -0.7 359,667 + MPMX19_06170 0.23 +1.6 359,668 - MPMX19_06170 0.23 -2.2 359,668 - MPMX19_06170 0.23 -0.4 359,668 - MPMX19_06170 0.23 +0.6 359,668 - MPMX19_06170 0.23 +0.3 359,668 - MPMX19_06170 0.23 -0.8 359,668 - MPMX19_06170 0.23 -1.3 359,668 - MPMX19_06170 0.23 -0.6 359,668 - MPMX19_06170 0.23 -0.7 359,668 - MPMX19_06170 0.23 -1.7 359,668 - MPMX19_06170 0.23 -0.7 359,707 - MPMX19_06170 0.25 -0.6 359,772 + MPMX19_06170 0.30 -1.4 359,772 + MPMX19_06170 0.30 -1.6 359,772 + MPMX19_06170 0.30 -0.7 359,772 + MPMX19_06170 0.30 -1.2 359,772 + MPMX19_06170 0.30 -1.0 359,772 + MPMX19_06170 0.30 -0.7 359,772 + MPMX19_06170 0.30 -1.2 359,772 + MPMX19_06170 0.30 +0.4 359,772 + MPMX19_06170 0.30 -0.7 359,772 + MPMX19_06170 0.30 -0.6 359,772 + MPMX19_06170 0.30 -0.7 359,772 + MPMX19_06170 0.30 +1.0 359,772 + MPMX19_06170 0.30 -0.4 359,772 + MPMX19_06170 0.30 -0.4 359,772 + MPMX19_06170 0.30 +0.6 359,772 + MPMX19_06170 0.30 -1.6 359,772 + MPMX19_06170 0.30 -0.9 359,772 + MPMX19_06170 0.30 -0.3 359,772 + MPMX19_06170 0.30 -1.2 359,772 + MPMX19_06170 0.30 -1.2 359,772 + MPMX19_06170 0.30 -0.7 359,772 + MPMX19_06170 0.30 -0.7 359,772 + MPMX19_06170 0.30 +0.6 359,772 + MPMX19_06170 0.30 +1.0 359,772 + MPMX19_06170 0.30 +1.2 359,773 - MPMX19_06170 0.30 -0.7 359,773 - MPMX19_06170 0.30 -0.1 359,773 - MPMX19_06170 0.30 -0.6 359,773 - MPMX19_06170 0.30 -0.1 359,773 - MPMX19_06170 0.30 -0.7 359,773 - MPMX19_06170 0.30 +0.0 359,773 - MPMX19_06170 0.30 -1.0 359,773 - MPMX19_06170 0.30 -0.5 359,773 - MPMX19_06170 0.30 +1.3 359,773 - MPMX19_06170 0.30 +0.4 359,773 - MPMX19_06170 0.30 -0.4 359,773 - MPMX19_06170 0.30 +0.0 359,773 - MPMX19_06170 0.30 +0.0
Or see this region's nucleotide sequence