Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06031

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06029 and MPMX19_06030 are separated by 38 nucleotidesMPMX19_06030 and MPMX19_06031 are separated by 214 nucleotidesMPMX19_06031 and MPMX19_06032 are separated by 191 nucleotides MPMX19_06029: MPMX19_06029 - Hydroxyacylglutathione hydrolase GloB, at 181,774 to 182,541 _06029 MPMX19_06030: MPMX19_06030 - putative GST-like protein YibF, at 182,580 to 183,185 _06030 MPMX19_06031: MPMX19_06031 - hypothetical protein, at 183,400 to 186,078 _06031 MPMX19_06032: MPMX19_06032 - Phosphate-binding protein PstS, at 186,270 to 187,346 _06032 Position (kb) 183 184 185 186 187Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 182.405 kb on + strand, within MPMX19_06029at 182.405 kb on + strand, within MPMX19_06029at 182.405 kb on + strand, within MPMX19_06029at 182.405 kb on + strand, within MPMX19_06029at 182.405 kb on + strand, within MPMX19_06029at 182.405 kb on + strand, within MPMX19_06029at 182.405 kb on + strand, within MPMX19_06029at 182.405 kb on + strand, within MPMX19_06029at 182.405 kb on + strand, within MPMX19_06029at 182.405 kb on + strand, within MPMX19_06029at 182.405 kb on + strand, within MPMX19_06029at 182.405 kb on + strand, within MPMX19_06029at 182.405 kb on + strand, within MPMX19_06029at 182.405 kb on + strand, within MPMX19_06029at 182.405 kb on + strand, within MPMX19_06029at 182.405 kb on + strand, within MPMX19_06029at 182.406 kb on - strand, within MPMX19_06029at 182.406 kb on - strand, within MPMX19_06029at 182.406 kb on - strand, within MPMX19_06029at 182.406 kb on - strand, within MPMX19_06029at 182.406 kb on - strand, within MPMX19_06029at 182.406 kb on - strand, within MPMX19_06029at 182.406 kb on - strand, within MPMX19_06029at 182.406 kb on - strand, within MPMX19_06029at 182.406 kb on - strand, within MPMX19_06029at 182.406 kb on - strand, within MPMX19_06029at 182.406 kb on - strand, within MPMX19_06029at 182.406 kb on - strand, within MPMX19_06029at 182.406 kb on - strand, within MPMX19_06029at 182.406 kb on - strand, within MPMX19_06029at 182.579 kb on + strandat 182.579 kb on + strandat 182.579 kb on + strandat 182.579 kb on + strandat 182.579 kb on + strandat 182.579 kb on + strandat 182.579 kb on + strandat 182.579 kb on + strandat 182.580 kb on - strandat 182.580 kb on - strandat 182.580 kb on - strandat 182.580 kb on - strandat 182.580 kb on - strandat 182.580 kb on - strandat 182.613 kb on + strandat 182.613 kb on + strandat 182.613 kb on + strandat 182.614 kb on - strandat 182.614 kb on - strandat 182.614 kb on - strandat 182.614 kb on - strandat 182.614 kb on - strandat 182.794 kb on - strand, within MPMX19_06030at 182.794 kb on - strand, within MPMX19_06030at 183.183 kb on + strandat 183.183 kb on + strandat 183.183 kb on + strandat 183.183 kb on + strandat 183.183 kb on + strandat 183.183 kb on + strandat 183.183 kb on + strandat 183.184 kb on - strandat 183.184 kb on - strandat 183.184 kb on - strandat 183.184 kb on - strandat 183.226 kb on + strandat 183.257 kb on + strandat 183.277 kb on + strandat 183.277 kb on + strandat 183.278 kb on - strandat 183.278 kb on - strandat 183.278 kb on - strandat 183.278 kb on - strandat 183.278 kb on - strandat 183.437 kb on + strandat 183.468 kb on + strandat 183.468 kb on + strandat 183.468 kb on + strandat 183.468 kb on + strandat 183.468 kb on + strandat 183.468 kb on + strandat 183.468 kb on + strandat 183.469 kb on - strandat 183.469 kb on - strandat 183.480 kb on + strandat 183.480 kb on + strandat 183.480 kb on + strandat 183.481 kb on - strandat 183.583 kb on + strandat 183.583 kb on + strandat 183.583 kb on + strandat 183.583 kb on + strandat 183.583 kb on + strandat 183.584 kb on - strandat 183.584 kb on - strandat 183.584 kb on - strandat 183.584 kb on - strandat 183.807 kb on + strand, within MPMX19_06031at 183.807 kb on + strand, within MPMX19_06031at 184.318 kb on + strand, within MPMX19_06031at 184.318 kb on + strand, within MPMX19_06031at 184.318 kb on + strand, within MPMX19_06031at 184.319 kb on - strand, within MPMX19_06031at 184.319 kb on - strand, within MPMX19_06031at 184.319 kb on - strand, within MPMX19_06031at 184.319 kb on - strand, within MPMX19_06031at 184.552 kb on + strand, within MPMX19_06031at 184.552 kb on + strand, within MPMX19_06031at 184.552 kb on + strand, within MPMX19_06031at 184.552 kb on + strand, within MPMX19_06031at 184.552 kb on + strand, within MPMX19_06031at 184.552 kb on + strand, within MPMX19_06031at 184.552 kb on + strand, within MPMX19_06031at 184.552 kb on + strand, within MPMX19_06031at 184.552 kb on + strand, within MPMX19_06031at 184.552 kb on + strand, within MPMX19_06031at 184.553 kb on - strand, within MPMX19_06031at 184.553 kb on - strand, within MPMX19_06031at 184.553 kb on - strand, within MPMX19_06031at 184.553 kb on - strand, within MPMX19_06031at 184.553 kb on - strand, within MPMX19_06031at 184.810 kb on + strand, within MPMX19_06031at 184.810 kb on + strand, within MPMX19_06031at 184.810 kb on + strand, within MPMX19_06031at 184.810 kb on + strand, within MPMX19_06031at 184.810 kb on + strand, within MPMX19_06031at 184.810 kb on + strand, within MPMX19_06031at 184.811 kb on - strand, within MPMX19_06031at 184.811 kb on - strand, within MPMX19_06031at 184.811 kb on - strand, within MPMX19_06031at 184.811 kb on - strand, within MPMX19_06031at 184.811 kb on - strand, within MPMX19_06031at 184.811 kb on - strand, within MPMX19_06031at 184.811 kb on - strand, within MPMX19_06031at 184.811 kb on - strand, within MPMX19_06031at 184.811 kb on - strand, within MPMX19_06031at 185.014 kb on + strand, within MPMX19_06031at 185.014 kb on + strand, within MPMX19_06031at 185.014 kb on + strand, within MPMX19_06031at 185.014 kb on + strand, within MPMX19_06031at 185.015 kb on - strand, within MPMX19_06031at 185.015 kb on - strand, within MPMX19_06031at 185.015 kb on - strand, within MPMX19_06031at 185.015 kb on - strand, within MPMX19_06031at 185.015 kb on - strand, within MPMX19_06031at 186.139 kb on - strandat 186.139 kb on - strandat 186.170 kb on - strandat 186.198 kb on - strandat 186.198 kb on - strandat 186.254 kb on + strandat 186.265 kb on + strandat 186.265 kb on + strandat 186.408 kb on + strand, within MPMX19_06032at 186.408 kb on + strand, within MPMX19_06032at 186.408 kb on + strand, within MPMX19_06032at 186.429 kb on + strand, within MPMX19_06032at 186.429 kb on + strand, within MPMX19_06032at 186.429 kb on + strand, within MPMX19_06032at 186.429 kb on + strand, within MPMX19_06032at 186.430 kb on - strand, within MPMX19_06032at 186.459 kb on + strand, within MPMX19_06032at 186.672 kb on + strand, within MPMX19_06032at 186.672 kb on + strand, within MPMX19_06032at 186.672 kb on + strand, within MPMX19_06032at 186.672 kb on + strand, within MPMX19_06032at 186.672 kb on + strand, within MPMX19_06032at 186.672 kb on + strand, within MPMX19_06032at 186.672 kb on + strand, within MPMX19_06032at 186.672 kb on + strand, within MPMX19_06032at 186.672 kb on + strand, within MPMX19_06032at 186.672 kb on + strand, within MPMX19_06032at 186.673 kb on - strand, within MPMX19_06032at 186.673 kb on - strand, within MPMX19_06032at 186.673 kb on - strand, within MPMX19_06032at 186.673 kb on - strand, within MPMX19_06032at 186.673 kb on - strand, within MPMX19_06032at 186.673 kb on - strand, within MPMX19_06032at 186.673 kb on - strand, within MPMX19_06032at 186.673 kb on - strand, within MPMX19_06032at 186.673 kb on - strand, within MPMX19_06032at 186.762 kb on + strand, within MPMX19_06032at 186.762 kb on + strand, within MPMX19_06032at 186.763 kb on - strand, within MPMX19_06032at 186.804 kb on + strand, within MPMX19_06032at 186.804 kb on + strand, within MPMX19_06032at 186.804 kb on + strand, within MPMX19_06032at 186.805 kb on - strand, within MPMX19_06032at 186.939 kb on + strand, within MPMX19_06032at 186.954 kb on + strand, within MPMX19_06032at 187.077 kb on + strand, within MPMX19_06032at 187.077 kb on + strand, within MPMX19_06032at 187.077 kb on + strand, within MPMX19_06032at 187.078 kb on - strand, within MPMX19_06032at 187.078 kb on - strand, within MPMX19_06032at 187.078 kb on - strand, within MPMX19_06032at 187.078 kb on - strand, within MPMX19_06032at 187.078 kb on - strand, within MPMX19_06032at 187.078 kb on - strand, within MPMX19_06032

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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182,405 + MPMX19_06029 0.82 +0.4
182,405 + MPMX19_06029 0.82 -0.7
182,405 + MPMX19_06029 0.82 +0.3
182,405 + MPMX19_06029 0.82 -1.5
182,405 + MPMX19_06029 0.82 +2.4
182,405 + MPMX19_06029 0.82 -1.4
182,405 + MPMX19_06029 0.82 -1.4
182,405 + MPMX19_06029 0.82 -0.7
182,405 + MPMX19_06029 0.82 +0.6
182,405 + MPMX19_06029 0.82 -1.5
182,405 + MPMX19_06029 0.82 -1.2
182,405 + MPMX19_06029 0.82 -0.9
182,405 + MPMX19_06029 0.82 -0.4
182,405 + MPMX19_06029 0.82 +0.3
182,405 + MPMX19_06029 0.82 -0.4
182,405 + MPMX19_06029 0.82 +1.1
182,406 - MPMX19_06029 0.82 -1.4
182,406 - MPMX19_06029 0.82 -2.1
182,406 - MPMX19_06029 0.82 +0.1
182,406 - MPMX19_06029 0.82 +0.9
182,406 - MPMX19_06029 0.82 +1.4
182,406 - MPMX19_06029 0.82 +0.3
182,406 - MPMX19_06029 0.82 +0.6
182,406 - MPMX19_06029 0.82 -2.1
182,406 - MPMX19_06029 0.82 -0.7
182,406 - MPMX19_06029 0.82 -0.4
182,406 - MPMX19_06029 0.82 +1.6
182,406 - MPMX19_06029 0.82 -0.4
182,406 - MPMX19_06029 0.82 -0.4
182,406 - MPMX19_06029 0.82 +0.1
182,579 + +1.2
182,579 + -0.4
182,579 + -0.5
182,579 + -1.4
182,579 + -0.9
182,579 + +1.6
182,579 + +0.4
182,579 + +1.1
182,580 - -1.1
182,580 - +0.1
182,580 - +1.1
182,580 - -2.5
182,580 - -1.8
182,580 - +0.1
182,613 + -0.9
182,613 + +0.1
182,613 + -2.4
182,614 - -0.4
182,614 - -0.6
182,614 - +0.3
182,614 - -0.7
182,614 - +0.1
182,794 - MPMX19_06030 0.35 -1.9
182,794 - MPMX19_06030 0.35 +0.1
183,183 + -1.4
183,183 + -1.4
183,183 + -1.4
183,183 + -1.2
183,183 + -0.7
183,183 + -2.4
183,183 + +0.6
183,184 - +0.3
183,184 - -1.4
183,184 - -0.8
183,184 - -1.4
183,226 + +2.6
183,257 + +0.3
183,277 + -1.5
183,277 + -0.9
183,278 - -3.0
183,278 - -0.8
183,278 - -1.5
183,278 - -0.4
183,278 - -0.4
183,437 + -0.4
183,468 + -0.4
183,468 + -0.7
183,468 + +1.6
183,468 + -1.4
183,468 + +1.0
183,468 + -1.7
183,468 + -0.4
183,469 - +1.1
183,469 - +0.3
183,480 + -0.4
183,480 + -1.1
183,480 + -2.0
183,481 - -1.2
183,583 + +0.1
183,583 + -0.7
183,583 + +1.6
183,583 + +1.6
183,583 + -0.9
183,584 - +0.1
183,584 - -1.1
183,584 - -1.5
183,584 - -0.4
183,807 + MPMX19_06031 0.15 +0.4
183,807 + MPMX19_06031 0.15 -1.7
184,318 + MPMX19_06031 0.34 -1.1
184,318 + MPMX19_06031 0.34 -2.7
184,318 + MPMX19_06031 0.34 -1.3
184,319 - MPMX19_06031 0.34 +0.6
184,319 - MPMX19_06031 0.34 -0.4
184,319 - MPMX19_06031 0.34 -0.4
184,319 - MPMX19_06031 0.34 +0.2
184,552 + MPMX19_06031 0.43 +0.3
184,552 + MPMX19_06031 0.43 -1.9
184,552 + MPMX19_06031 0.43 -0.7
184,552 + MPMX19_06031 0.43 -0.2
184,552 + MPMX19_06031 0.43 -1.5
184,552 + MPMX19_06031 0.43 -0.9
184,552 + MPMX19_06031 0.43 -1.3
184,552 + MPMX19_06031 0.43 -1.8
184,552 + MPMX19_06031 0.43 -0.9
184,552 + MPMX19_06031 0.43 -1.4
184,553 - MPMX19_06031 0.43 -1.8
184,553 - MPMX19_06031 0.43 -2.4
184,553 - MPMX19_06031 0.43 -2.3
184,553 - MPMX19_06031 0.43 -0.9
184,553 - MPMX19_06031 0.43 -1.1
184,810 + MPMX19_06031 0.53 -0.2
184,810 + MPMX19_06031 0.53 -1.2
184,810 + MPMX19_06031 0.53 -0.7
184,810 + MPMX19_06031 0.53 -0.5
184,810 + MPMX19_06031 0.53 -0.9
184,810 + MPMX19_06031 0.53 -0.4
184,811 - MPMX19_06031 0.53 -0.4
184,811 - MPMX19_06031 0.53 -0.4
184,811 - MPMX19_06031 0.53 -1.2
184,811 - MPMX19_06031 0.53 -0.1
184,811 - MPMX19_06031 0.53 -1.4
184,811 - MPMX19_06031 0.53 +1.6
184,811 - MPMX19_06031 0.53 -1.4
184,811 - MPMX19_06031 0.53 -1.7
184,811 - MPMX19_06031 0.53 -1.2
185,014 + MPMX19_06031 0.60 +0.1
185,014 + MPMX19_06031 0.60 -0.4
185,014 + MPMX19_06031 0.60 -1.4
185,014 + MPMX19_06031 0.60 -1.1
185,015 - MPMX19_06031 0.60 -0.4
185,015 - MPMX19_06031 0.60 -2.5
185,015 - MPMX19_06031 0.60 -1.7
185,015 - MPMX19_06031 0.60 -1.2
185,015 - MPMX19_06031 0.60 -0.9
186,139 - +0.1
186,139 - +0.3
186,170 - -1.2
186,198 - -0.7
186,198 - -0.4
186,254 + +0.1
186,265 + -0.2
186,265 + +0.1
186,408 + MPMX19_06032 0.13 -0.7
186,408 + MPMX19_06032 0.13 +0.1
186,408 + MPMX19_06032 0.13 -0.7
186,429 + MPMX19_06032 0.15 +0.1
186,429 + MPMX19_06032 0.15 -0.2
186,429 + MPMX19_06032 0.15 +0.1
186,429 + MPMX19_06032 0.15 +1.1
186,430 - MPMX19_06032 0.15 +0.1
186,459 + MPMX19_06032 0.18 +0.6
186,672 + MPMX19_06032 0.37 -0.7
186,672 + MPMX19_06032 0.37 +2.1
186,672 + MPMX19_06032 0.37 -0.7
186,672 + MPMX19_06032 0.37 +0.1
186,672 + MPMX19_06032 0.37 +0.1
186,672 + MPMX19_06032 0.37 -0.9
186,672 + MPMX19_06032 0.37 -1.8
186,672 + MPMX19_06032 0.37 +0.6
186,672 + MPMX19_06032 0.37 -0.4
186,672 + MPMX19_06032 0.37 -1.5
186,673 - MPMX19_06032 0.37 -0.5
186,673 - MPMX19_06032 0.37 +0.6
186,673 - MPMX19_06032 0.37 -0.7
186,673 - MPMX19_06032 0.37 -1.4
186,673 - MPMX19_06032 0.37 -0.9
186,673 - MPMX19_06032 0.37 +0.6
186,673 - MPMX19_06032 0.37 -0.7
186,673 - MPMX19_06032 0.37 -0.4
186,673 - MPMX19_06032 0.37 +0.1
186,762 + MPMX19_06032 0.46 -0.4
186,762 + MPMX19_06032 0.46 +0.9
186,763 - MPMX19_06032 0.46 +0.8
186,804 + MPMX19_06032 0.50 +0.6
186,804 + MPMX19_06032 0.50 +1.2
186,804 + MPMX19_06032 0.50 -0.7
186,805 - MPMX19_06032 0.50 +0.6
186,939 + MPMX19_06032 0.62 +0.4
186,954 + MPMX19_06032 0.64 +0.3
187,077 + MPMX19_06032 0.75 +0.6
187,077 + MPMX19_06032 0.75 +0.1
187,077 + MPMX19_06032 0.75 +0.6
187,078 - MPMX19_06032 0.75 +0.6
187,078 - MPMX19_06032 0.75 -0.9
187,078 - MPMX19_06032 0.75 -0.7
187,078 - MPMX19_06032 0.75 -0.5
187,078 - MPMX19_06032 0.75 +1.1
187,078 - MPMX19_06032 0.75 +0.1

Or see this region's nucleotide sequence