Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05809

Experiment: NF_with10percent_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05808 and MPMX19_05809 are separated by 17 nucleotidesMPMX19_05809 and MPMX19_05810 are separated by 344 nucleotidesMPMX19_05810 and MPMX19_05811 are separated by 27 nucleotides MPMX19_05808: MPMX19_05808 - NAD-dependent dihydropyrimidine dehydrogenase subunit PreA, at 534,111 to 535,394 _05808 MPMX19_05809: MPMX19_05809 - NAD-dependent dihydropyrimidine dehydrogenase subunit PreT, at 535,412 to 536,722 _05809 MPMX19_05810: MPMX19_05810 - Methylated-DNA--protein-cysteine methyltransferase, at 537,067 to 537,603 _05810 MPMX19_05811: MPMX19_05811 - 2,4-dienoyl-CoA reductase, at 537,631 to 539,682 _05811 Position (kb) 535 536 537Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 534.526 kb on + strand, within MPMX19_05808at 534.526 kb on + strand, within MPMX19_05808at 534.526 kb on + strand, within MPMX19_05808at 534.526 kb on + strand, within MPMX19_05808at 534.526 kb on + strand, within MPMX19_05808at 534.526 kb on + strand, within MPMX19_05808at 534.526 kb on + strand, within MPMX19_05808at 534.527 kb on - strand, within MPMX19_05808at 534.527 kb on - strand, within MPMX19_05808at 534.527 kb on - strand, within MPMX19_05808at 534.527 kb on - strand, within MPMX19_05808at 534.527 kb on - strand, within MPMX19_05808at 534.527 kb on - strand, within MPMX19_05808at 534.527 kb on - strand, within MPMX19_05808at 534.527 kb on - strand, within MPMX19_05808at 534.527 kb on - strand, within MPMX19_05808at 534.527 kb on - strand, within MPMX19_05808at 534.527 kb on - strand, within MPMX19_05808at 534.527 kb on - strand, within MPMX19_05808at 534.527 kb on - strand, within MPMX19_05808at 534.703 kb on + strand, within MPMX19_05808at 534.703 kb on + strand, within MPMX19_05808at 535.309 kb on + strandat 535.309 kb on + strandat 535.309 kb on + strandat 535.309 kb on + strandat 535.309 kb on + strandat 535.309 kb on + strandat 535.309 kb on + strandat 535.309 kb on + strandat 535.309 kb on + strandat 535.309 kb on + strandat 535.309 kb on + strandat 535.309 kb on + strandat 535.310 kb on - strandat 535.310 kb on - strandat 535.310 kb on - strandat 535.310 kb on - strandat 535.310 kb on - strandat 535.310 kb on - strandat 535.310 kb on - strandat 535.310 kb on - strandat 535.310 kb on - strandat 535.310 kb on - strandat 535.310 kb on - strandat 535.539 kb on + strandat 535.539 kb on + strandat 535.540 kb on - strandat 535.540 kb on - strandat 535.818 kb on + strand, within MPMX19_05809at 535.818 kb on + strand, within MPMX19_05809at 535.819 kb on - strand, within MPMX19_05809at 536.175 kb on + strand, within MPMX19_05809at 536.175 kb on + strand, within MPMX19_05809at 536.175 kb on + strand, within MPMX19_05809at 536.175 kb on + strand, within MPMX19_05809at 536.175 kb on + strand, within MPMX19_05809at 536.175 kb on + strand, within MPMX19_05809at 536.176 kb on - strand, within MPMX19_05809at 536.176 kb on - strand, within MPMX19_05809at 536.190 kb on + strand, within MPMX19_05809at 536.190 kb on + strand, within MPMX19_05809at 536.191 kb on - strand, within MPMX19_05809at 536.191 kb on - strand, within MPMX19_05809at 536.601 kb on + strandat 536.601 kb on + strandat 536.602 kb on - strandat 536.602 kb on - strandat 536.602 kb on - strandat 536.707 kb on + strandat 536.707 kb on + strandat 536.707 kb on + strandat 536.707 kb on + strandat 536.708 kb on - strandat 536.760 kb on + strandat 536.760 kb on + strandat 536.761 kb on - strandat 536.858 kb on + strandat 536.859 kb on - strandat 537.053 kb on + strandat 537.223 kb on + strand, within MPMX19_05810at 537.277 kb on + strand, within MPMX19_05810at 537.277 kb on + strand, within MPMX19_05810at 537.277 kb on + strand, within MPMX19_05810at 537.278 kb on - strand, within MPMX19_05810at 537.278 kb on - strand, within MPMX19_05810at 537.278 kb on - strand, within MPMX19_05810at 537.278 kb on - strand, within MPMX19_05810at 537.278 kb on - strand, within MPMX19_05810at 537.278 kb on - strand, within MPMX19_05810at 537.278 kb on - strand, within MPMX19_05810at 537.278 kb on - strand, within MPMX19_05810at 537.278 kb on - strand, within MPMX19_05810at 537.395 kb on - strand, within MPMX19_05810at 537.395 kb on - strand, within MPMX19_05810at 537.395 kb on - strand, within MPMX19_05810at 537.612 kb on + strandat 537.612 kb on + strandat 537.612 kb on + strandat 537.613 kb on - strandat 537.613 kb on - strandat 537.632 kb on + strandat 537.632 kb on + strandat 537.632 kb on + strandat 537.632 kb on + strandat 537.632 kb on + strandat 537.633 kb on - strandat 537.633 kb on - strandat 537.633 kb on - strandat 537.633 kb on - strandat 537.633 kb on - strandat 537.633 kb on - strandat 537.633 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
remove
534,526 + MPMX19_05808 0.32 -0.6
534,526 + MPMX19_05808 0.32 +0.9
534,526 + MPMX19_05808 0.32 -0.1
534,526 + MPMX19_05808 0.32 +2.0
534,526 + MPMX19_05808 0.32 +1.4
534,526 + MPMX19_05808 0.32 +1.4
534,526 + MPMX19_05808 0.32 -1.1
534,527 - MPMX19_05808 0.32 -0.9
534,527 - MPMX19_05808 0.32 -0.9
534,527 - MPMX19_05808 0.32 -1.3
534,527 - MPMX19_05808 0.32 -0.2
534,527 - MPMX19_05808 0.32 -0.5
534,527 - MPMX19_05808 0.32 -0.1
534,527 - MPMX19_05808 0.32 -0.6
534,527 - MPMX19_05808 0.32 -0.9
534,527 - MPMX19_05808 0.32 +0.4
534,527 - MPMX19_05808 0.32 -0.1
534,527 - MPMX19_05808 0.32 +0.2
534,527 - MPMX19_05808 0.32 -0.1
534,527 - MPMX19_05808 0.32 +0.2
534,703 + MPMX19_05808 0.46 +0.0
534,703 + MPMX19_05808 0.46 -1.6
535,309 + +0.7
535,309 + +1.4
535,309 + -0.9
535,309 + +0.2
535,309 + -0.4
535,309 + +1.4
535,309 + +0.3
535,309 + +0.4
535,309 + +0.0
535,309 + -1.1
535,309 + -0.4
535,309 + +0.1
535,310 - -1.1
535,310 - -3.2
535,310 - -0.9
535,310 - -0.9
535,310 - -0.6
535,310 - -0.6
535,310 - -0.6
535,310 - +0.1
535,310 - -0.6
535,310 - -2.0
535,310 - -0.1
535,539 + +1.1
535,539 + -1.1
535,540 - -1.6
535,540 - +0.7
535,818 + MPMX19_05809 0.31 -0.3
535,818 + MPMX19_05809 0.31 -0.9
535,819 - MPMX19_05809 0.31 -0.9
536,175 + MPMX19_05809 0.58 -2.5
536,175 + MPMX19_05809 0.58 +0.2
536,175 + MPMX19_05809 0.58 -1.4
536,175 + MPMX19_05809 0.58 -1.1
536,175 + MPMX19_05809 0.58 -1.6
536,175 + MPMX19_05809 0.58 -0.7
536,176 - MPMX19_05809 0.58 -0.6
536,176 - MPMX19_05809 0.58 +0.4
536,190 + MPMX19_05809 0.59 -1.3
536,190 + MPMX19_05809 0.59 -1.7
536,191 - MPMX19_05809 0.59 -1.7
536,191 - MPMX19_05809 0.59 -1.3
536,601 + +0.4
536,601 + -0.1
536,602 - -2.1
536,602 - +0.4
536,602 - -0.9
536,707 + -1.4
536,707 + -0.1
536,707 + -1.4
536,707 + -0.0
536,708 - +0.7
536,760 + -0.6
536,760 + +1.4
536,761 - -0.6
536,858 + -0.6
536,859 - -0.1
537,053 + -0.1
537,223 + MPMX19_05810 0.29 +0.4
537,277 + MPMX19_05810 0.39 +2.2
537,277 + MPMX19_05810 0.39 -1.4
537,277 + MPMX19_05810 0.39 -1.7
537,278 - MPMX19_05810 0.39 +1.0
537,278 - MPMX19_05810 0.39 +0.8
537,278 - MPMX19_05810 0.39 +0.4
537,278 - MPMX19_05810 0.39 +1.4
537,278 - MPMX19_05810 0.39 +0.2
537,278 - MPMX19_05810 0.39 -0.1
537,278 - MPMX19_05810 0.39 -0.6
537,278 - MPMX19_05810 0.39 -0.9
537,278 - MPMX19_05810 0.39 -0.1
537,395 - MPMX19_05810 0.61 -0.9
537,395 - MPMX19_05810 0.61 +1.2
537,395 - MPMX19_05810 0.61 -1.3
537,612 + -0.9
537,612 + +0.2
537,612 + -2.1
537,613 - -1.4
537,613 - -1.9
537,632 + -1.4
537,632 + -0.1
537,632 + -0.1
537,632 + -0.6
537,632 + +1.4
537,633 - -0.3
537,633 - -0.4
537,633 - +0.4
537,633 - +0.1
537,633 - -0.7
537,633 - +0.2
537,633 - -0.9

Or see this region's nucleotide sequence