Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05767 and MPMX19_05768 are separated by 101 nucleotides MPMX19_05768 and MPMX19_05769 are separated by 428 nucleotides MPMX19_05769 and MPMX19_05770 are separated by 470 nucleotides
MPMX19_05767: MPMX19_05767 - Sensor histidine kinase RcsC, at 489,306 to 491,660
_05767
MPMX19_05768: MPMX19_05768 - hypothetical protein, at 491,762 to 492,007
_05768
MPMX19_05769: MPMX19_05769 - hypothetical protein, at 492,436 to 493,035
_05769
MPMX19_05770: MPMX19_05770 - 1,2-phenylacetyl-CoA epoxidase, subunit A, at 493,506 to 494,519
_05770
Position (kb) 492
493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 491.602 kb on + strand at 491.813 kb on + strand, within MPMX19_05768 at 491.813 kb on + strand, within MPMX19_05768 at 491.813 kb on + strand, within MPMX19_05768 at 491.813 kb on + strand, within MPMX19_05768 at 491.813 kb on + strand, within MPMX19_05768 at 491.814 kb on - strand, within MPMX19_05768 at 491.814 kb on - strand, within MPMX19_05768 at 491.920 kb on + strand, within MPMX19_05768 at 491.920 kb on + strand, within MPMX19_05768 at 491.921 kb on - strand, within MPMX19_05768 at 491.921 kb on - strand, within MPMX19_05768 at 491.921 kb on - strand, within MPMX19_05768 at 492.057 kb on - strand at 492.071 kb on - strand at 492.120 kb on + strand at 492.120 kb on + strand at 492.121 kb on - strand at 492.121 kb on - strand at 492.133 kb on - strand at 492.137 kb on + strand at 492.137 kb on + strand at 492.137 kb on + strand at 492.137 kb on + strand at 492.137 kb on + strand at 492.137 kb on + strand at 492.137 kb on + strand at 492.137 kb on + strand at 492.138 kb on - strand at 492.138 kb on - strand at 492.138 kb on - strand at 492.138 kb on - strand at 492.138 kb on - strand at 492.138 kb on - strand at 492.138 kb on - strand at 492.138 kb on - strand at 492.138 kb on - strand at 492.138 kb on - strand at 492.167 kb on - strand at 492.225 kb on + strand at 492.226 kb on - strand at 492.226 kb on - strand at 492.228 kb on + strand at 492.228 kb on + strand at 492.229 kb on - strand at 492.303 kb on + strand at 492.304 kb on - strand at 492.316 kb on + strand at 492.317 kb on - strand at 492.317 kb on - strand at 492.317 kb on - strand at 492.317 kb on - strand at 492.346 kb on + strand at 492.346 kb on + strand at 492.347 kb on - strand at 492.347 kb on - strand at 492.351 kb on + strand at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.529 kb on + strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.530 kb on - strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.973 kb on + strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 492.974 kb on - strand, within MPMX19_05769 at 493.226 kb on + strand at 493.227 kb on - strand at 493.452 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.509 kb on + strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.510 kb on - strand at 493.812 kb on + strand, within MPMX19_05770 at 493.812 kb on + strand, within MPMX19_05770 at 493.812 kb on + strand, within MPMX19_05770 at 493.812 kb on + strand, within MPMX19_05770 at 493.812 kb on + strand, within MPMX19_05770 at 493.812 kb on + strand, within MPMX19_05770 at 493.813 kb on - strand, within MPMX19_05770 at 493.813 kb on - strand, within MPMX19_05770 at 493.813 kb on - strand, within MPMX19_05770 at 493.813 kb on - strand, within MPMX19_05770 at 493.813 kb on - strand, within MPMX19_05770 at 493.813 kb on - strand, within MPMX19_05770 at 493.813 kb on - strand, within MPMX19_05770 at 493.813 kb on - strand, within MPMX19_05770 at 493.813 kb on - strand, within MPMX19_05770 at 493.818 kb on + strand, within MPMX19_05770 at 493.818 kb on + strand, within MPMX19_05770 at 493.819 kb on - strand, within MPMX19_05770 at 493.819 kb on - strand, within MPMX19_05770 at 493.819 kb on - strand, within MPMX19_05770 at 493.890 kb on + strand, within MPMX19_05770 at 493.890 kb on + strand, within MPMX19_05770 at 493.890 kb on + strand, within MPMX19_05770 at 493.891 kb on - strand, within MPMX19_05770 at 493.908 kb on + strand, within MPMX19_05770 at 493.908 kb on + strand, within MPMX19_05770 at 493.908 kb on + strand, within MPMX19_05770 at 493.909 kb on - strand, within MPMX19_05770 at 494.001 kb on + strand, within MPMX19_05770 at 494.001 kb on + strand, within MPMX19_05770 at 494.001 kb on + strand, within MPMX19_05770 at 494.001 kb on + strand, within MPMX19_05770 at 494.001 kb on + strand, within MPMX19_05770 at 494.001 kb on + strand, within MPMX19_05770 at 494.002 kb on - strand, within MPMX19_05770 at 494.010 kb on + strand, within MPMX19_05770 at 494.010 kb on + strand, within MPMX19_05770 at 494.010 kb on + strand, within MPMX19_05770 at 494.010 kb on + strand, within MPMX19_05770 at 494.010 kb on + strand, within MPMX19_05770 at 494.010 kb on + strand, within MPMX19_05770 at 494.011 kb on - strand, within MPMX19_05770 at 494.011 kb on - strand, within MPMX19_05770 at 494.011 kb on - strand, within MPMX19_05770 at 494.011 kb on - strand, within MPMX19_05770 at 494.011 kb on - strand, within MPMX19_05770 at 494.011 kb on - strand, within MPMX19_05770 at 494.011 kb on - strand, within MPMX19_05770 at 494.011 kb on - strand, within MPMX19_05770 at 494.011 kb on - strand, within MPMX19_05770
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 491,602 + -0.3 491,813 + MPMX19_05768 0.21 -0.7 491,813 + MPMX19_05768 0.21 +0.4 491,813 + MPMX19_05768 0.21 +0.2 491,813 + MPMX19_05768 0.21 +0.3 491,813 + MPMX19_05768 0.21 +0.4 491,814 - MPMX19_05768 0.21 -0.3 491,814 - MPMX19_05768 0.21 +1.0 491,920 + MPMX19_05768 0.64 -1.1 491,920 + MPMX19_05768 0.64 -0.6 491,921 - MPMX19_05768 0.65 -0.1 491,921 - MPMX19_05768 0.65 +0.3 491,921 - MPMX19_05768 0.65 -0.9 492,057 - -0.6 492,071 - -1.1 492,120 + +0.7 492,120 + -1.7 492,121 - -0.6 492,121 - +0.9 492,133 - +0.4 492,137 + -0.8 492,137 + -1.4 492,137 + -0.6 492,137 + -0.6 492,137 + -1.4 492,137 + +0.1 492,137 + -1.1 492,137 + +0.1 492,138 - +0.4 492,138 - +0.2 492,138 - +0.4 492,138 - -0.7 492,138 - +1.4 492,138 - -0.3 492,138 - -0.9 492,138 - -0.1 492,138 - -0.9 492,138 - -0.1 492,167 - -0.4 492,225 + -0.3 492,226 - -1.4 492,226 - -1.6 492,228 + -1.0 492,228 + -0.7 492,229 - -0.6 492,303 + -0.1 492,304 - -1.4 492,316 + +0.3 492,317 - -0.3 492,317 - -0.6 492,317 - -0.8 492,317 - -0.6 492,346 + -1.6 492,346 + -1.3 492,347 - -0.1 492,347 - +0.7 492,351 + -0.9 492,529 + MPMX19_05769 0.15 -1.5 492,529 + MPMX19_05769 0.15 -0.9 492,529 + MPMX19_05769 0.15 -0.9 492,529 + MPMX19_05769 0.15 +0.9 492,529 + MPMX19_05769 0.15 -0.0 492,529 + MPMX19_05769 0.15 -1.4 492,529 + MPMX19_05769 0.15 -1.4 492,529 + MPMX19_05769 0.15 -1.4 492,529 + MPMX19_05769 0.15 -2.0 492,529 + MPMX19_05769 0.15 -1.4 492,529 + MPMX19_05769 0.15 +0.9 492,529 + MPMX19_05769 0.15 -0.4 492,530 - MPMX19_05769 0.16 -0.6 492,530 - MPMX19_05769 0.16 -0.7 492,530 - MPMX19_05769 0.16 -1.3 492,530 - MPMX19_05769 0.16 -0.4 492,530 - MPMX19_05769 0.16 -0.1 492,530 - MPMX19_05769 0.16 -0.9 492,530 - MPMX19_05769 0.16 -0.1 492,530 - MPMX19_05769 0.16 +2.0 492,530 - MPMX19_05769 0.16 -0.7 492,530 - MPMX19_05769 0.16 -1.6 492,530 - MPMX19_05769 0.16 -0.6 492,530 - MPMX19_05769 0.16 -0.9 492,973 + MPMX19_05769 0.90 -0.1 492,973 + MPMX19_05769 0.90 +0.9 492,973 + MPMX19_05769 0.90 +0.1 492,973 + MPMX19_05769 0.90 +0.1 492,973 + MPMX19_05769 0.90 +0.0 492,973 + MPMX19_05769 0.90 -0.4 492,973 + MPMX19_05769 0.90 -0.1 492,973 + MPMX19_05769 0.90 +0.4 492,973 + MPMX19_05769 0.90 -1.6 492,973 + MPMX19_05769 0.90 -0.6 492,973 + MPMX19_05769 0.90 +0.4 492,973 + MPMX19_05769 0.90 -2.5 492,973 + MPMX19_05769 0.90 -0.6 492,973 + MPMX19_05769 0.90 +0.4 492,973 + MPMX19_05769 0.90 -0.6 492,973 + MPMX19_05769 0.90 -1.4 492,973 + MPMX19_05769 0.90 -1.7 492,974 - MPMX19_05769 0.90 -0.6 492,974 - MPMX19_05769 0.90 -0.8 492,974 - MPMX19_05769 0.90 -0.9 492,974 - MPMX19_05769 0.90 -0.4 492,974 - MPMX19_05769 0.90 -1.1 492,974 - MPMX19_05769 0.90 -0.1 492,974 - MPMX19_05769 0.90 -0.1 492,974 - MPMX19_05769 0.90 -0.4 492,974 - MPMX19_05769 0.90 +1.4 492,974 - MPMX19_05769 0.90 -0.1 492,974 - MPMX19_05769 0.90 -1.9 492,974 - MPMX19_05769 0.90 -0.4 492,974 - MPMX19_05769 0.90 -1.0 493,226 + +1.4 493,227 - -2.9 493,452 + -1.2 493,509 + -1.0 493,509 + +0.1 493,509 + -1.1 493,509 + -1.4 493,509 + -1.7 493,509 + -0.9 493,509 + +1.4 493,509 + -0.1 493,509 + +0.1 493,509 + -0.9 493,509 + +1.1 493,509 + +0.9 493,509 + -0.1 493,509 + +0.6 493,510 - -0.1 493,510 - -1.1 493,510 - -1.8 493,510 - +1.4 493,510 - -1.6 493,510 - +0.9 493,510 - -0.3 493,510 - +1.0 493,510 - +0.6 493,510 - +0.1 493,510 - -0.6 493,510 - -0.1 493,510 - -0.9 493,812 + MPMX19_05770 0.30 -0.9 493,812 + MPMX19_05770 0.30 +0.2 493,812 + MPMX19_05770 0.30 -1.3 493,812 + MPMX19_05770 0.30 -1.1 493,812 + MPMX19_05770 0.30 +0.9 493,812 + MPMX19_05770 0.30 -0.4 493,813 - MPMX19_05770 0.30 +1.8 493,813 - MPMX19_05770 0.30 -1.4 493,813 - MPMX19_05770 0.30 -0.9 493,813 - MPMX19_05770 0.30 -0.9 493,813 - MPMX19_05770 0.30 -0.4 493,813 - MPMX19_05770 0.30 -0.4 493,813 - MPMX19_05770 0.30 +0.7 493,813 - MPMX19_05770 0.30 -1.9 493,813 - MPMX19_05770 0.30 -0.3 493,818 + MPMX19_05770 0.31 -1.7 493,818 + MPMX19_05770 0.31 -0.6 493,819 - MPMX19_05770 0.31 -1.1 493,819 - MPMX19_05770 0.31 -0.9 493,819 - MPMX19_05770 0.31 -1.1 493,890 + MPMX19_05770 0.38 -0.6 493,890 + MPMX19_05770 0.38 -0.6 493,890 + MPMX19_05770 0.38 -1.1 493,891 - MPMX19_05770 0.38 -1.4 493,908 + MPMX19_05770 0.40 +0.4 493,908 + MPMX19_05770 0.40 -0.1 493,908 + MPMX19_05770 0.40 -1.6 493,909 - MPMX19_05770 0.40 -0.9 494,001 + MPMX19_05770 0.49 -0.1 494,001 + MPMX19_05770 0.49 -0.6 494,001 + MPMX19_05770 0.49 +0.3 494,001 + MPMX19_05770 0.49 -1.1 494,001 + MPMX19_05770 0.49 -0.9 494,001 + MPMX19_05770 0.49 +0.1 494,002 - MPMX19_05770 0.49 -0.6 494,010 + MPMX19_05770 0.50 -0.6 494,010 + MPMX19_05770 0.50 +0.2 494,010 + MPMX19_05770 0.50 +0.0 494,010 + MPMX19_05770 0.50 +2.4 494,010 + MPMX19_05770 0.50 -0.6 494,010 + MPMX19_05770 0.50 +0.4 494,011 - MPMX19_05770 0.50 +1.0 494,011 - MPMX19_05770 0.50 +0.1 494,011 - MPMX19_05770 0.50 +0.4 494,011 - MPMX19_05770 0.50 -0.3 494,011 - MPMX19_05770 0.50 -0.7 494,011 - MPMX19_05770 0.50 -1.6 494,011 - MPMX19_05770 0.50 -0.6 494,011 - MPMX19_05770 0.50 -0.6 494,011 - MPMX19_05770 0.50 +0.4
Or see this region's nucleotide sequence