Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05373

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05371 and MPMX19_05372 are separated by 4 nucleotidesMPMX19_05372 and MPMX19_05373 are separated by 159 nucleotidesMPMX19_05373 and MPMX19_05374 are separated by 126 nucleotides MPMX19_05371: MPMX19_05371 - hypothetical protein, at 44,048 to 44,941 _05371 MPMX19_05372: MPMX19_05372 - Cell division ATP-binding protein FtsE, at 44,946 to 45,683 _05372 MPMX19_05373: MPMX19_05373 - hypothetical protein, at 45,843 to 46,625 _05373 MPMX19_05374: MPMX19_05374 - hypothetical protein, at 46,752 to 48,593 _05374 Position (kb) 45 46 47Strain fitness (log2 ratio) -2 -1 0 1at 44.947 kb on + strandat 44.948 kb on - strandat 44.948 kb on - strandat 44.948 kb on - strandat 44.988 kb on + strandat 44.988 kb on + strandat 44.988 kb on + strandat 44.988 kb on + strandat 44.988 kb on + strandat 44.988 kb on + strandat 44.988 kb on + strandat 44.989 kb on - strandat 44.989 kb on - strandat 44.989 kb on - strandat 44.989 kb on - strandat 44.989 kb on - strandat 44.989 kb on - strandat 44.989 kb on - strandat 44.989 kb on - strandat 44.989 kb on - strandat 44.989 kb on - strandat 44.989 kb on - strandat 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.134 kb on - strand, within MPMX19_05372at 45.134 kb on - strand, within MPMX19_05372at 45.134 kb on - strand, within MPMX19_05372at 45.134 kb on - strand, within MPMX19_05372at 45.134 kb on - strand, within MPMX19_05372at 45.134 kb on - strand, within MPMX19_05372at 45.134 kb on - strand, within MPMX19_05372at 45.134 kb on - strand, within MPMX19_05372at 45.134 kb on - strand, within MPMX19_05372at 45.151 kb on + strand, within MPMX19_05372at 45.151 kb on + strand, within MPMX19_05372at 45.151 kb on + strand, within MPMX19_05372at 45.151 kb on + strand, within MPMX19_05372at 45.151 kb on + strand, within MPMX19_05372at 45.152 kb on - strand, within MPMX19_05372at 45.152 kb on - strand, within MPMX19_05372at 45.152 kb on - strand, within MPMX19_05372at 45.152 kb on - strand, within MPMX19_05372at 45.152 kb on - strand, within MPMX19_05372at 45.152 kb on - strand, within MPMX19_05372at 45.152 kb on - strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.652 kb on + strandat 45.653 kb on - strandat 45.804 kb on + strandat 45.805 kb on - strandat 45.805 kb on - strandat 46.635 kb on + strandat 46.656 kb on - strandat 46.677 kb on + strandat 46.677 kb on + strandat 46.677 kb on + strandat 46.677 kb on + strandat 46.677 kb on + strandat 46.677 kb on + strandat 46.678 kb on - strandat 46.678 kb on - strandat 46.678 kb on - strandat 46.678 kb on - strandat 46.678 kb on - strandat 46.686 kb on - strandat 46.686 kb on - strandat 46.686 kb on - strandat 46.686 kb on - strandat 46.686 kb on - strandat 46.782 kb on - strandat 46.788 kb on + strandat 46.788 kb on + strandat 46.996 kb on - strand, within MPMX19_05374at 46.996 kb on - strand, within MPMX19_05374at 47.052 kb on + strand, within MPMX19_05374at 47.052 kb on + strand, within MPMX19_05374at 47.053 kb on - strand, within MPMX19_05374at 47.137 kb on - strand, within MPMX19_05374at 47.373 kb on + strand, within MPMX19_05374at 47.373 kb on + strand, within MPMX19_05374at 47.373 kb on + strand, within MPMX19_05374at 47.374 kb on - strand, within MPMX19_05374at 47.374 kb on - strand, within MPMX19_05374at 47.413 kb on - strand, within MPMX19_05374at 47.413 kb on - strand, within MPMX19_05374at 47.422 kb on - strand, within MPMX19_05374at 47.442 kb on + strand, within MPMX19_05374at 47.442 kb on + strand, within MPMX19_05374at 47.442 kb on + strand, within MPMX19_05374at 47.442 kb on + strand, within MPMX19_05374at 47.442 kb on + strand, within MPMX19_05374at 47.443 kb on - strand, within MPMX19_05374at 47.443 kb on - strand, within MPMX19_05374

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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44,947 + -2.4
44,948 - -2.3
44,948 - +0.7
44,948 - -1.6
44,988 + -1.3
44,988 + -0.6
44,988 + -0.6
44,988 + -0.9
44,988 + -1.2
44,988 + -0.4
44,988 + -0.2
44,989 - -0.6
44,989 - -1.0
44,989 - -0.5
44,989 - -1.4
44,989 - +1.0
44,989 - +0.1
44,989 - -1.7
44,989 - +0.4
44,989 - +0.4
44,989 - -1.5
44,989 - +0.8
45,133 + MPMX19_05372 0.25 -1.2
45,133 + MPMX19_05372 0.25 -0.6
45,133 + MPMX19_05372 0.25 -1.2
45,133 + MPMX19_05372 0.25 -1.2
45,133 + MPMX19_05372 0.25 -1.2
45,133 + MPMX19_05372 0.25 +0.4
45,133 + MPMX19_05372 0.25 -1.2
45,133 + MPMX19_05372 0.25 -0.2
45,133 + MPMX19_05372 0.25 -0.6
45,133 + MPMX19_05372 0.25 +1.4
45,133 + MPMX19_05372 0.25 +0.4
45,133 + MPMX19_05372 0.25 +0.3
45,133 + MPMX19_05372 0.25 -0.6
45,133 + MPMX19_05372 0.25 +1.4
45,133 + MPMX19_05372 0.25 -1.9
45,134 - MPMX19_05372 0.25 +0.1
45,134 - MPMX19_05372 0.25 -0.8
45,134 - MPMX19_05372 0.25 -1.1
45,134 - MPMX19_05372 0.25 -0.9
45,134 - MPMX19_05372 0.25 +1.4
45,134 - MPMX19_05372 0.25 +1.4
45,134 - MPMX19_05372 0.25 -1.9
45,134 - MPMX19_05372 0.25 -2.5
45,134 - MPMX19_05372 0.25 +0.1
45,151 + MPMX19_05372 0.28 +1.4
45,151 + MPMX19_05372 0.28 -0.2
45,151 + MPMX19_05372 0.28 +1.0
45,151 + MPMX19_05372 0.28 +0.4
45,151 + MPMX19_05372 0.28 -0.8
45,152 - MPMX19_05372 0.28 +0.4
45,152 - MPMX19_05372 0.28 -1.6
45,152 - MPMX19_05372 0.28 -0.6
45,152 - MPMX19_05372 0.28 +0.1
45,152 - MPMX19_05372 0.28 +0.8
45,152 - MPMX19_05372 0.28 -0.9
45,152 - MPMX19_05372 0.28 -1.1
45,538 + MPMX19_05372 0.80 -0.2
45,538 + MPMX19_05372 0.80 -2.0
45,538 + MPMX19_05372 0.80 +1.4
45,538 + MPMX19_05372 0.80 -0.2
45,538 + MPMX19_05372 0.80 -0.6
45,538 + MPMX19_05372 0.80 -0.9
45,538 + MPMX19_05372 0.80 -0.6
45,538 + MPMX19_05372 0.80 -0.4
45,538 + MPMX19_05372 0.80 +0.7
45,538 + MPMX19_05372 0.80 -0.4
45,538 + MPMX19_05372 0.80 -1.2
45,539 - MPMX19_05372 0.80 -0.4
45,539 - MPMX19_05372 0.80 -0.8
45,539 - MPMX19_05372 0.80 -0.5
45,539 - MPMX19_05372 0.80 -0.2
45,539 - MPMX19_05372 0.80 +1.4
45,539 - MPMX19_05372 0.80 -2.0
45,539 - MPMX19_05372 0.80 +0.4
45,539 - MPMX19_05372 0.80 +1.4
45,539 - MPMX19_05372 0.80 -0.2
45,539 - MPMX19_05372 0.80 +0.9
45,539 - MPMX19_05372 0.80 -1.2
45,539 - MPMX19_05372 0.80 +1.4
45,539 - MPMX19_05372 0.80 +1.7
45,539 - MPMX19_05372 0.80 -0.6
45,539 - MPMX19_05372 0.80 -1.9
45,652 + -0.9
45,653 - -0.9
45,804 + -0.6
45,805 - -1.6
45,805 - +1.0
46,635 + +0.2
46,656 - -1.5
46,677 + -0.4
46,677 + -0.2
46,677 + -0.6
46,677 + -1.9
46,677 + -0.6
46,677 + -0.3
46,678 - -0.4
46,678 - -0.3
46,678 - -2.5
46,678 - -1.6
46,678 - -0.3
46,686 - +0.6
46,686 - +0.8
46,686 - -1.4
46,686 - +1.7
46,686 - +0.1
46,782 - -0.2
46,788 + +1.4
46,788 + -0.8
46,996 - MPMX19_05374 0.13 -0.3
46,996 - MPMX19_05374 0.13 +1.0
47,052 + MPMX19_05374 0.16 -1.9
47,052 + MPMX19_05374 0.16 +0.2
47,053 - MPMX19_05374 0.16 -0.6
47,137 - MPMX19_05374 0.21 +0.1
47,373 + MPMX19_05374 0.34 -1.2
47,373 + MPMX19_05374 0.34 -0.6
47,373 + MPMX19_05374 0.34 -0.9
47,374 - MPMX19_05374 0.34 -0.6
47,374 - MPMX19_05374 0.34 +0.8
47,413 - MPMX19_05374 0.36 -1.6
47,413 - MPMX19_05374 0.36 -1.2
47,422 - MPMX19_05374 0.36 -0.9
47,442 + MPMX19_05374 0.37 +0.1
47,442 + MPMX19_05374 0.37 -0.6
47,442 + MPMX19_05374 0.37 +0.1
47,442 + MPMX19_05374 0.37 -1.9
47,442 + MPMX19_05374 0.37 -0.2
47,443 - MPMX19_05374 0.38 +0.2
47,443 - MPMX19_05374 0.38 -0.9

Or see this region's nucleotide sequence