Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05141

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05140 and MPMX19_05141 are separated by 37 nucleotidesMPMX19_05141 and MPMX19_05142 overlap by 4 nucleotides MPMX19_05140: MPMX19_05140 - hypothetical protein, at 635,721 to 636,446 _05140 MPMX19_05141: MPMX19_05141 - hypothetical protein, at 636,484 to 636,771 _05141 MPMX19_05142: MPMX19_05142 - hypothetical protein, at 636,768 to 637,658 _05142 Position (kb) 636 637Strain fitness (log2 ratio) -2 -1 0 1 2 3at 635.549 kb on + strandat 635.549 kb on + strandat 635.549 kb on + strandat 635.549 kb on + strandat 635.595 kb on + strandat 635.595 kb on + strandat 635.595 kb on + strandat 635.596 kb on - strandat 635.596 kb on - strandat 635.596 kb on - strandat 635.596 kb on - strandat 635.648 kb on + strandat 635.648 kb on + strandat 635.649 kb on - strandat 635.665 kb on + strandat 635.666 kb on - strandat 635.666 kb on - strandat 635.673 kb on + strandat 635.674 kb on - strandat 635.674 kb on - strandat 635.824 kb on + strand, within MPMX19_05140at 635.824 kb on + strand, within MPMX19_05140at 635.824 kb on + strand, within MPMX19_05140at 635.824 kb on + strand, within MPMX19_05140at 635.824 kb on + strand, within MPMX19_05140at 635.824 kb on + strand, within MPMX19_05140at 635.825 kb on - strand, within MPMX19_05140at 635.825 kb on - strand, within MPMX19_05140at 635.825 kb on - strand, within MPMX19_05140at 635.875 kb on + strand, within MPMX19_05140at 635.875 kb on + strand, within MPMX19_05140at 635.875 kb on + strand, within MPMX19_05140at 635.875 kb on + strand, within MPMX19_05140at 635.875 kb on + strand, within MPMX19_05140at 635.875 kb on + strand, within MPMX19_05140at 635.875 kb on + strand, within MPMX19_05140at 635.875 kb on + strand, within MPMX19_05140at 635.875 kb on + strand, within MPMX19_05140at 635.875 kb on + strand, within MPMX19_05140at 635.875 kb on + strand, within MPMX19_05140at 635.876 kb on - strand, within MPMX19_05140at 635.876 kb on - strand, within MPMX19_05140at 635.876 kb on - strand, within MPMX19_05140at 635.876 kb on - strand, within MPMX19_05140at 635.876 kb on - strand, within MPMX19_05140at 635.876 kb on - strand, within MPMX19_05140at 635.876 kb on - strand, within MPMX19_05140at 635.876 kb on - strand, within MPMX19_05140at 635.876 kb on - strand, within MPMX19_05140at 635.968 kb on + strand, within MPMX19_05140at 635.968 kb on + strand, within MPMX19_05140at 635.968 kb on + strand, within MPMX19_05140at 635.968 kb on + strand, within MPMX19_05140at 635.968 kb on + strand, within MPMX19_05140at 635.969 kb on - strand, within MPMX19_05140at 635.969 kb on - strand, within MPMX19_05140at 635.969 kb on - strand, within MPMX19_05140at 635.969 kb on - strand, within MPMX19_05140at 635.969 kb on - strand, within MPMX19_05140at 635.969 kb on - strand, within MPMX19_05140at 636.125 kb on + strand, within MPMX19_05140at 636.125 kb on + strand, within MPMX19_05140at 636.126 kb on - strand, within MPMX19_05140at 636.126 kb on - strand, within MPMX19_05140at 636.281 kb on + strand, within MPMX19_05140at 636.281 kb on + strand, within MPMX19_05140at 636.281 kb on + strand, within MPMX19_05140at 636.281 kb on + strand, within MPMX19_05140at 636.282 kb on - strand, within MPMX19_05140at 636.299 kb on + strand, within MPMX19_05140at 636.299 kb on + strand, within MPMX19_05140at 636.299 kb on + strand, within MPMX19_05140at 636.299 kb on + strand, within MPMX19_05140at 636.299 kb on + strand, within MPMX19_05140at 636.299 kb on + strand, within MPMX19_05140at 636.300 kb on - strand, within MPMX19_05140at 636.300 kb on - strand, within MPMX19_05140at 636.300 kb on - strand, within MPMX19_05140at 636.352 kb on + strand, within MPMX19_05140at 636.512 kb on + strandat 636.512 kb on + strandat 636.554 kb on + strand, within MPMX19_05141at 636.554 kb on + strand, within MPMX19_05141at 636.554 kb on + strand, within MPMX19_05141at 636.554 kb on + strand, within MPMX19_05141at 636.554 kb on + strand, within MPMX19_05141at 636.555 kb on - strand, within MPMX19_05141at 636.555 kb on - strand, within MPMX19_05141at 636.555 kb on - strand, within MPMX19_05141at 636.555 kb on - strand, within MPMX19_05141at 636.602 kb on + strand, within MPMX19_05141at 636.602 kb on + strand, within MPMX19_05141at 636.602 kb on + strand, within MPMX19_05141at 636.602 kb on + strand, within MPMX19_05141at 636.603 kb on - strand, within MPMX19_05141at 636.603 kb on - strand, within MPMX19_05141at 636.603 kb on - strand, within MPMX19_05141at 636.603 kb on - strand, within MPMX19_05141at 636.610 kb on + strand, within MPMX19_05141at 636.610 kb on + strand, within MPMX19_05141at 636.610 kb on + strand, within MPMX19_05141at 636.610 kb on + strand, within MPMX19_05141at 636.610 kb on + strand, within MPMX19_05141at 636.610 kb on + strand, within MPMX19_05141at 636.610 kb on + strand, within MPMX19_05141at 636.610 kb on + strand, within MPMX19_05141at 636.610 kb on + strand, within MPMX19_05141at 636.611 kb on - strand, within MPMX19_05141at 636.611 kb on - strand, within MPMX19_05141at 636.611 kb on - strand, within MPMX19_05141at 636.611 kb on - strand, within MPMX19_05141at 636.611 kb on - strand, within MPMX19_05141at 636.611 kb on - strand, within MPMX19_05141at 636.611 kb on - strand, within MPMX19_05141at 636.789 kb on + strandat 636.789 kb on + strandat 636.789 kb on + strandat 636.789 kb on + strandat 636.789 kb on + strandat 636.789 kb on + strandat 636.789 kb on + strandat 636.790 kb on - strandat 636.790 kb on - strandat 636.790 kb on - strandat 636.790 kb on - strandat 636.790 kb on - strandat 636.790 kb on - strandat 636.790 kb on - strandat 636.790 kb on - strandat 636.858 kb on - strand, within MPMX19_05142at 636.960 kb on - strand, within MPMX19_05142at 636.960 kb on - strand, within MPMX19_05142at 636.960 kb on - strand, within MPMX19_05142at 636.960 kb on - strand, within MPMX19_05142at 636.960 kb on - strand, within MPMX19_05142at 636.960 kb on - strand, within MPMX19_05142at 636.960 kb on - strand, within MPMX19_05142at 636.960 kb on - strand, within MPMX19_05142at 636.962 kb on - strand, within MPMX19_05142at 636.962 kb on - strand, within MPMX19_05142at 636.962 kb on - strand, within MPMX19_05142at 636.962 kb on - strand, within MPMX19_05142at 636.962 kb on - strand, within MPMX19_05142at 636.962 kb on - strand, within MPMX19_05142at 636.962 kb on - strand, within MPMX19_05142at 636.962 kb on - strand, within MPMX19_05142at 636.962 kb on - strand, within MPMX19_05142at 636.962 kb on - strand, within MPMX19_05142at 636.962 kb on - strand, within MPMX19_05142at 636.962 kb on - strand, within MPMX19_05142at 636.962 kb on - strand, within MPMX19_05142at 636.982 kb on + strand, within MPMX19_05142at 636.982 kb on + strand, within MPMX19_05142at 636.982 kb on + strand, within MPMX19_05142at 636.983 kb on - strand, within MPMX19_05142at 636.983 kb on - strand, within MPMX19_05142at 636.983 kb on - strand, within MPMX19_05142at 636.983 kb on - strand, within MPMX19_05142at 636.983 kb on - strand, within MPMX19_05142at 636.991 kb on + strand, within MPMX19_05142at 636.991 kb on + strand, within MPMX19_05142at 636.991 kb on + strand, within MPMX19_05142at 636.991 kb on + strand, within MPMX19_05142at 636.991 kb on + strand, within MPMX19_05142at 636.991 kb on + strand, within MPMX19_05142at 636.991 kb on + strand, within MPMX19_05142at 636.991 kb on + strand, within MPMX19_05142at 636.991 kb on + strand, within MPMX19_05142at 636.991 kb on + strand, within MPMX19_05142at 636.992 kb on - strand, within MPMX19_05142at 636.992 kb on - strand, within MPMX19_05142at 637.228 kb on - strand, within MPMX19_05142at 637.280 kb on - strand, within MPMX19_05142at 637.280 kb on - strand, within MPMX19_05142at 637.280 kb on - strand, within MPMX19_05142at 637.280 kb on - strand, within MPMX19_05142at 637.280 kb on - strand, within MPMX19_05142at 637.280 kb on - strand, within MPMX19_05142at 637.280 kb on - strand, within MPMX19_05142at 637.280 kb on - strand, within MPMX19_05142at 637.280 kb on - strand, within MPMX19_05142at 637.393 kb on - strand, within MPMX19_05142at 637.430 kb on - strand, within MPMX19_05142at 637.546 kb on + strand, within MPMX19_05142at 637.547 kb on - strand, within MPMX19_05142at 637.547 kb on - strand, within MPMX19_05142at 637.547 kb on - strand, within MPMX19_05142at 637.547 kb on - strand, within MPMX19_05142at 637.547 kb on - strand, within MPMX19_05142at 637.547 kb on - strand, within MPMX19_05142at 637.547 kb on - strand, within MPMX19_05142at 637.547 kb on - strand, within MPMX19_05142at 637.547 kb on - strand, within MPMX19_05142at 637.547 kb on - strand, within MPMX19_05142at 637.547 kb on - strand, within MPMX19_05142at 637.703 kb on + strandat 637.703 kb on + strandat 637.703 kb on + strandat 637.703 kb on + strandat 637.703 kb on + strandat 637.704 kb on - strandat 637.704 kb on - strandat 637.704 kb on - strandat 637.704 kb on - strandat 637.704 kb on - strandat 637.704 kb on - strandat 637.704 kb on - strandat 637.704 kb on - strandat 637.704 kb on - strandat 637.741 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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635,549 + -0.1
635,549 + -0.4
635,549 + -0.4
635,549 + -1.2
635,595 + +0.9
635,595 + -1.8
635,595 + -0.4
635,596 - -1.5
635,596 - -0.3
635,596 - -0.2
635,596 - +0.0
635,648 + +3.2
635,648 + +0.0
635,649 - +0.0
635,665 + -1.4
635,666 - -1.5
635,666 - -2.5
635,673 + -0.5
635,674 - +1.6
635,674 - -0.7
635,824 + MPMX19_05140 0.14 -0.4
635,824 + MPMX19_05140 0.14 -1.7
635,824 + MPMX19_05140 0.14 +0.8
635,824 + MPMX19_05140 0.14 +1.0
635,824 + MPMX19_05140 0.14 -1.0
635,824 + MPMX19_05140 0.14 -0.2
635,825 - MPMX19_05140 0.14 -0.4
635,825 - MPMX19_05140 0.14 +0.0
635,825 - MPMX19_05140 0.14 -1.5
635,875 + MPMX19_05140 0.21 -0.8
635,875 + MPMX19_05140 0.21 +0.0
635,875 + MPMX19_05140 0.21 -1.5
635,875 + MPMX19_05140 0.21 -1.4
635,875 + MPMX19_05140 0.21 +1.2
635,875 + MPMX19_05140 0.21 -1.8
635,875 + MPMX19_05140 0.21 +0.4
635,875 + MPMX19_05140 0.21 +0.8
635,875 + MPMX19_05140 0.21 +0.0
635,875 + MPMX19_05140 0.21 -0.2
635,875 + MPMX19_05140 0.21 -1.2
635,876 - MPMX19_05140 0.21 -0.4
635,876 - MPMX19_05140 0.21 -1.9
635,876 - MPMX19_05140 0.21 -0.1
635,876 - MPMX19_05140 0.21 -1.1
635,876 - MPMX19_05140 0.21 -0.5
635,876 - MPMX19_05140 0.21 -0.7
635,876 - MPMX19_05140 0.21 -0.5
635,876 - MPMX19_05140 0.21 -1.8
635,876 - MPMX19_05140 0.21 -1.0
635,968 + MPMX19_05140 0.34 +0.9
635,968 + MPMX19_05140 0.34 -1.7
635,968 + MPMX19_05140 0.34 -0.8
635,968 + MPMX19_05140 0.34 +0.0
635,968 + MPMX19_05140 0.34 -0.8
635,969 - MPMX19_05140 0.34 -1.4
635,969 - MPMX19_05140 0.34 -2.5
635,969 - MPMX19_05140 0.34 -2.0
635,969 - MPMX19_05140 0.34 -0.2
635,969 - MPMX19_05140 0.34 -0.5
635,969 - MPMX19_05140 0.34 +1.9
636,125 + MPMX19_05140 0.56 -0.9
636,125 + MPMX19_05140 0.56 +1.0
636,126 - MPMX19_05140 0.56 +0.0
636,126 - MPMX19_05140 0.56 -1.5
636,281 + MPMX19_05140 0.77 -0.5
636,281 + MPMX19_05140 0.77 -2.5
636,281 + MPMX19_05140 0.77 -1.1
636,281 + MPMX19_05140 0.77 -0.5
636,282 - MPMX19_05140 0.77 -0.7
636,299 + MPMX19_05140 0.80 -1.2
636,299 + MPMX19_05140 0.80 -1.1
636,299 + MPMX19_05140 0.80 -0.2
636,299 + MPMX19_05140 0.80 +0.0
636,299 + MPMX19_05140 0.80 -1.2
636,299 + MPMX19_05140 0.80 -0.4
636,300 - MPMX19_05140 0.80 -0.4
636,300 - MPMX19_05140 0.80 -0.7
636,300 - MPMX19_05140 0.80 -0.4
636,352 + MPMX19_05140 0.87 +0.0
636,512 + -0.2
636,512 + -0.4
636,554 + MPMX19_05141 0.24 -0.5
636,554 + MPMX19_05141 0.24 +0.6
636,554 + MPMX19_05141 0.24 +0.2
636,554 + MPMX19_05141 0.24 -0.8
636,554 + MPMX19_05141 0.24 -0.2
636,555 - MPMX19_05141 0.25 -0.2
636,555 - MPMX19_05141 0.25 +1.0
636,555 - MPMX19_05141 0.25 +0.0
636,555 - MPMX19_05141 0.25 -0.4
636,602 + MPMX19_05141 0.41 +0.6
636,602 + MPMX19_05141 0.41 -0.2
636,602 + MPMX19_05141 0.41 -0.8
636,602 + MPMX19_05141 0.41 -0.1
636,603 - MPMX19_05141 0.41 +0.6
636,603 - MPMX19_05141 0.41 -0.9
636,603 - MPMX19_05141 0.41 -0.7
636,603 - MPMX19_05141 0.41 -2.0
636,610 + MPMX19_05141 0.44 -0.3
636,610 + MPMX19_05141 0.44 +1.2
636,610 + MPMX19_05141 0.44 -0.7
636,610 + MPMX19_05141 0.44 -0.7
636,610 + MPMX19_05141 0.44 -0.7
636,610 + MPMX19_05141 0.44 +1.1
636,610 + MPMX19_05141 0.44 +0.8
636,610 + MPMX19_05141 0.44 -0.8
636,610 + MPMX19_05141 0.44 +1.6
636,611 - MPMX19_05141 0.44 +1.0
636,611 - MPMX19_05141 0.44 +1.6
636,611 - MPMX19_05141 0.44 +0.3
636,611 - MPMX19_05141 0.44 -1.7
636,611 - MPMX19_05141 0.44 -0.5
636,611 - MPMX19_05141 0.44 +0.0
636,611 - MPMX19_05141 0.44 +0.6
636,789 + -1.4
636,789 + -1.5
636,789 + -0.2
636,789 + -1.1
636,789 + -0.4
636,789 + -0.8
636,789 + -0.2
636,790 - -0.8
636,790 - +0.0
636,790 - +0.8
636,790 - -0.5
636,790 - -0.5
636,790 - -0.7
636,790 - -1.8
636,790 - +0.3
636,858 - MPMX19_05142 0.10 -0.7
636,960 - MPMX19_05142 0.22 +1.6
636,960 - MPMX19_05142 0.22 -0.3
636,960 - MPMX19_05142 0.22 +0.6
636,960 - MPMX19_05142 0.22 +0.0
636,960 - MPMX19_05142 0.22 -0.3
636,960 - MPMX19_05142 0.22 +2.4
636,960 - MPMX19_05142 0.22 -0.5
636,960 - MPMX19_05142 0.22 +0.0
636,962 - MPMX19_05142 0.22 -0.6
636,962 - MPMX19_05142 0.22 +1.6
636,962 - MPMX19_05142 0.22 -0.4
636,962 - MPMX19_05142 0.22 -1.5
636,962 - MPMX19_05142 0.22 -0.4
636,962 - MPMX19_05142 0.22 +1.6
636,962 - MPMX19_05142 0.22 -2.2
636,962 - MPMX19_05142 0.22 -0.7
636,962 - MPMX19_05142 0.22 -0.4
636,962 - MPMX19_05142 0.22 +1.0
636,962 - MPMX19_05142 0.22 -1.0
636,962 - MPMX19_05142 0.22 +0.3
636,962 - MPMX19_05142 0.22 -0.7
636,982 + MPMX19_05142 0.24 +0.6
636,982 + MPMX19_05142 0.24 +0.4
636,982 + MPMX19_05142 0.24 +2.4
636,983 - MPMX19_05142 0.24 -1.7
636,983 - MPMX19_05142 0.24 -0.5
636,983 - MPMX19_05142 0.24 -2.0
636,983 - MPMX19_05142 0.24 -0.7
636,983 - MPMX19_05142 0.24 -1.8
636,991 + MPMX19_05142 0.25 -0.7
636,991 + MPMX19_05142 0.25 -1.8
636,991 + MPMX19_05142 0.25 +0.3
636,991 + MPMX19_05142 0.25 -1.5
636,991 + MPMX19_05142 0.25 +0.0
636,991 + MPMX19_05142 0.25 +1.3
636,991 + MPMX19_05142 0.25 +0.6
636,991 + MPMX19_05142 0.25 -2.1
636,991 + MPMX19_05142 0.25 -0.7
636,991 + MPMX19_05142 0.25 -1.0
636,992 - MPMX19_05142 0.25 -0.4
636,992 - MPMX19_05142 0.25 +0.6
637,228 - MPMX19_05142 0.52 -1.0
637,280 - MPMX19_05142 0.57 -1.0
637,280 - MPMX19_05142 0.57 +0.0
637,280 - MPMX19_05142 0.57 -0.2
637,280 - MPMX19_05142 0.57 -0.8
637,280 - MPMX19_05142 0.57 -2.0
637,280 - MPMX19_05142 0.57 -1.4
637,280 - MPMX19_05142 0.57 -0.5
637,280 - MPMX19_05142 0.57 +0.0
637,280 - MPMX19_05142 0.57 +0.5
637,393 - MPMX19_05142 0.70 -1.2
637,430 - MPMX19_05142 0.74 +0.3
637,546 + MPMX19_05142 0.87 +0.3
637,547 - MPMX19_05142 0.87 -2.6
637,547 - MPMX19_05142 0.87 -0.5
637,547 - MPMX19_05142 0.87 +0.3
637,547 - MPMX19_05142 0.87 -1.0
637,547 - MPMX19_05142 0.87 -0.4
637,547 - MPMX19_05142 0.87 -0.1
637,547 - MPMX19_05142 0.87 -0.4
637,547 - MPMX19_05142 0.87 -1.8
637,547 - MPMX19_05142 0.87 +0.2
637,547 - MPMX19_05142 0.87 +0.6
637,547 - MPMX19_05142 0.87 -1.2
637,703 + -0.7
637,703 + -0.1
637,703 + -1.5
637,703 + -0.2
637,703 + -0.7
637,704 - -0.9
637,704 - -0.4
637,704 - +0.4
637,704 - -0.7
637,704 - -0.7
637,704 - -0.4
637,704 - +1.6
637,704 - -1.0
637,704 - +0.9
637,741 - -1.0

Or see this region's nucleotide sequence