Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04904

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NF_with10percent_fullN
				remove
353,160	+	MPMX19_04902	0.34	-1.5
353,160	+	MPMX19_04902	0.34	-1.2
353,160	+	MPMX19_04902	0.34	-0.0
353,161	-	MPMX19_04902	0.34	-1.8
353,161	-	MPMX19_04902	0.34	-0.3
353,161	-	MPMX19_04902	0.34	-1.7
353,196	+	MPMX19_04902	0.41	-1.8
353,196	+	MPMX19_04902	0.41	-0.5
353,196	+	MPMX19_04902	0.41	-0.3
353,197	-	MPMX19_04902	0.42	+1.2
353,289	+	MPMX19_04902	0.61	-2.3
353,341	-	MPMX19_04902	0.72	+0.3
353,341	-	MPMX19_04902	0.72	+0.7
353,341	-	MPMX19_04902	0.72	-0.9
353,341	-	MPMX19_04902	0.72	-0.5
353,502	+			-0.9
353,502	+			+0.3
353,507	-			+0.7
353,507	-			+0.7
353,599	+			-0.9
353,599	+			+0.7
353,599	+			-0.7
353,599	+			-1.2
353,599	+			-1.9
353,599	+			+0.1
353,599	+			-0.8
353,599	+			-1.2
353,599	+			-1.7
353,599	+			-0.9
353,599	+			-1.2
353,599	+			-0.3
353,599	+			-2.2
353,599	+			-1.5
353,600	-			-0.9
353,600	-			-1.3
353,600	-			+0.1
353,600	-			-2.5
353,600	-			-0.9
353,600	-			-1.2
353,600	-			-1.3
353,600	-			+0.3
353,600	-			-0.2
353,600	-			+0.7
353,600	-			+2.2
353,600	-			-0.9
353,600	-			-0.6
353,651	+			-0.3
353,651	+			-1.9
353,651	+			+0.3
353,651	+			-0.9
353,651	+			+1.1
353,652	-			-3.3
353,652	-			-0.2
353,652	-			-2.2
353,652	-			+0.7
353,652	-			+0.3
353,759	+			-0.5
353,759	+			-0.7
353,759	+			-0.7
353,759	+			-1.6
353,760	-			+0.3
353,760	-			-0.9
353,760	-			-0.7
353,833	+	MPMX19_04903	0.10	+1.7
353,833	+	MPMX19_04903	0.10	-0.7
353,833	+	MPMX19_04903	0.10	-2.2
353,833	+	MPMX19_04903	0.10	-1.3
353,834	-	MPMX19_04903	0.11	-1.3
353,834	-	MPMX19_04903	0.11	-0.9
353,852	-	MPMX19_04903	0.20	-0.3
353,852	-	MPMX19_04903	0.20	+1.1
353,904	+	MPMX19_04903	0.48	-0.2
353,904	+	MPMX19_04903	0.48	+1.1
353,904	+	MPMX19_04903	0.48	-0.8
353,905	-	MPMX19_04903	0.48	-0.5
353,905	-	MPMX19_04903	0.48	+0.1
353,905	-	MPMX19_04903	0.48	-1.3
353,905	-	MPMX19_04903	0.48	-1.3
353,905	-	MPMX19_04903	0.48	-0.3
353,905	-	MPMX19_04903	0.48	+0.1
353,994	+			-2.3
353,994	+			-0.9
353,994	+			-1.8
353,994	+			-0.9
353,994	+			-0.2
353,994	+			-0.7
353,994	+			+1.7
353,994	+			-1.3
353,994	+			-0.7
353,994	+			+0.1
353,994	+			+0.2
353,994	+			-1.2
353,994	+			-0.3
353,994	+			+0.1
353,994	+			-1.5
353,994	+			-1.2
353,994	+			-0.8
353,995	-			-1.8
353,995	-			+0.5
353,995	-			-1.2
353,995	-			-1.3
353,995	-			+0.7
353,995	-			+0.1
353,995	-			-0.8
353,995	-			-0.3
353,995	-			-0.5
353,995	-			+0.1
353,995	-			+0.3
354,000	+			-0.9
354,000	+			+0.1
354,000	+			-0.4
354,000	+			-0.5
354,001	-			+0.1
354,001	-			+1.1
354,001	-			+0.4
354,001	-			+2.7
354,001	-			-0.3
354,001	-			-0.9
354,001	-			-0.2
354,044	+			-0.9
354,182	+			-0.3
354,182	+			+1.7
354,182	+			-1.7
354,183	-			+0.7
354,183	-			+0.4
354,183	-			+2.7
354,183	-			+0.7
354,986	+	MPMX19_04904	0.19	-0.0
354,986	+	MPMX19_04904	0.19	-0.3
354,986	+	MPMX19_04904	0.19	-0.7
354,986	+	MPMX19_04904	0.19	-0.7
354,986	+	MPMX19_04904	0.19	+0.3
354,986	+	MPMX19_04904	0.19	+1.7
354,986	+	MPMX19_04904	0.19	+1.7
354,986	+	MPMX19_04904	0.19	-0.5
354,986	+	MPMX19_04904	0.19	-0.3
354,986	+	MPMX19_04904	0.19	+0.5
354,986	+	MPMX19_04904	0.19	-0.2
354,987	-	MPMX19_04904	0.19	-0.3
354,987	-	MPMX19_04904	0.19	-0.3
354,987	-	MPMX19_04904	0.19	+0.2
354,987	-	MPMX19_04904	0.19	+0.7
355,001	+	MPMX19_04904	0.20	+0.1
355,001	+	MPMX19_04904	0.20	+0.7
355,001	+	MPMX19_04904	0.20	+0.4
355,002	-	MPMX19_04904	0.20	-2.3
355,002	-	MPMX19_04904	0.20	-0.2
355,055	+	MPMX19_04904	0.21	+0.7
355,055	+	MPMX19_04904	0.21	+0.7
355,055	+	MPMX19_04904	0.21	+0.7
355,056	-	MPMX19_04904	0.21	-0.3
355,056	-	MPMX19_04904	0.21	-1.0
355,056	-	MPMX19_04904	0.21	+1.1
355,056	-	MPMX19_04904	0.21	+0.3
355,193	+	MPMX19_04904	0.24	+0.3
355,787	+	MPMX19_04904	0.36	-1.2
355,788	-	MPMX19_04904	0.36	-0.3
356,033	+	MPMX19_04904	0.41	+1.1
356,034	-	MPMX19_04904	0.41	-0.5
356,034	-	MPMX19_04904	0.41	+1.3
356,034	-	MPMX19_04904	0.41	-0.3
356,034	-	MPMX19_04904	0.41	-0.3
356,034	-	MPMX19_04904	0.41	-1.3
356,195	+	MPMX19_04904	0.45	+0.3
356,195	+	MPMX19_04904	0.45	-0.9
356,195	+	MPMX19_04904	0.45	+1.1
356,195	+	MPMX19_04904	0.45	-0.5
356,195	+	MPMX19_04904	0.45	-0.3
356,195	+	MPMX19_04904	0.45	+0.5
356,196	-	MPMX19_04904	0.45	+1.2
356,549	+	MPMX19_04904	0.52	+0.7
356,550	-	MPMX19_04904	0.52	+3.2
356,550	-	MPMX19_04904	0.52	+0.9
356,550	-	MPMX19_04904	0.52	-2.3
356,550	-	MPMX19_04904	0.52	+0.3
356,550	-	MPMX19_04904	0.52	-0.7
356,594	+	MPMX19_04904	0.53	-0.3
356,594	+	MPMX19_04904	0.53	+0.9
356,636	+	MPMX19_04904	0.54	+0.7
356,637	-	MPMX19_04904	0.54	-0.5
356,864	+	MPMX19_04904	0.59	-0.3
356,864	+	MPMX19_04904	0.59	+0.7
356,864	+	MPMX19_04904	0.59	-1.0
356,864	+	MPMX19_04904	0.59	+1.1
356,864	+	MPMX19_04904	0.59	+0.9
356,865	-	MPMX19_04904	0.59	-0.2
356,865	-	MPMX19_04904	0.59	-0.7
356,865	-	MPMX19_04904	0.59	+0.7
356,865	-	MPMX19_04904	0.59	-0.9
356,888	+	MPMX19_04904	0.59	+0.1
356,888	+	MPMX19_04904	0.59	+0.7
356,889	-	MPMX19_04904	0.59	-0.8
356,889	-	MPMX19_04904	0.59	-0.3
356,889	-	MPMX19_04904	0.59	-0.9
356,897	+	MPMX19_04904	0.59	-0.2
356,898	-	MPMX19_04904	0.59	+0.3
356,898	-	MPMX19_04904	0.59	+0.1
356,903	+	MPMX19_04904	0.59	-0.3
356,903	+	MPMX19_04904	0.59	-0.2
356,903	+	MPMX19_04904	0.59	+0.7
356,903	+	MPMX19_04904	0.59	-0.3
356,903	+	MPMX19_04904	0.59	+0.1
356,903	+	MPMX19_04904	0.59	+1.3
356,904	-	MPMX19_04904	0.59	-0.7
356,904	-	MPMX19_04904	0.59	+1.7
356,904	-	MPMX19_04904	0.59	-0.7
356,924	+	MPMX19_04904	0.60	-1.3
356,924	+	MPMX19_04904	0.60	+1.3
356,924	+	MPMX19_04904	0.60	+0.8
356,925	-	MPMX19_04904	0.60	-0.3
356,925	-	MPMX19_04904	0.60	-0.3
356,925	-	MPMX19_04904	0.60	-0.9
356,925	-	MPMX19_04904	0.60	+0.1
357,260	+	MPMX19_04904	0.67	+0.7
357,260	+	MPMX19_04904	0.67	+0.7
357,261	-	MPMX19_04904	0.67	+0.1
357,278	+	MPMX19_04904	0.67	+0.2
357,345	-	MPMX19_04904	0.69	-0.9
357,345	-	MPMX19_04904	0.69	+0.7
357,350	+	MPMX19_04904	0.69	+0.1
357,350	+	MPMX19_04904	0.69	-0.8
357,350	+	MPMX19_04904	0.69	-0.7
357,350	+	MPMX19_04904	0.69	+0.5
357,350	+	MPMX19_04904	0.69	-0.3
357,350	+	MPMX19_04904	0.69	+0.7
357,350	+	MPMX19_04904	0.69	+1.1
357,350	+	MPMX19_04904	0.69	-0.5
357,350	+	MPMX19_04904	0.69	+0.1
357,350	+	MPMX19_04904	0.69	+1.1
357,350	+	MPMX19_04904	0.69	+1.1
357,351	-	MPMX19_04904	0.69	+1.7
357,351	-	MPMX19_04904	0.69	+0.6
357,351	-	MPMX19_04904	0.69	-0.7
357,521	+	MPMX19_04904	0.72	+0.9
357,522	-	MPMX19_04904	0.72	-0.7
357,554	+	MPMX19_04904	0.73	-0.8
357,554	+	MPMX19_04904	0.73	+0.7
357,554	+	MPMX19_04904	0.73	-0.9
357,554	+	MPMX19_04904	0.73	+0.7
357,554	+	MPMX19_04904	0.73	-0.9
357,554	+	MPMX19_04904	0.73	-0.7
357,555	-	MPMX19_04904	0.73	+0.8
357,707	+	MPMX19_04904	0.76	-0.2
357,708	-	MPMX19_04904	0.76	+1.7
357,725	+	MPMX19_04904	0.77	+1.2
357,725	+	MPMX19_04904	0.77	-1.8
357,725	+	MPMX19_04904	0.77	-0.9
357,725	+	MPMX19_04904	0.77	-1.8
357,725	+	MPMX19_04904	0.77	+0.1
357,726	-	MPMX19_04904	0.77	-0.3
357,731	+	MPMX19_04904	0.77	-1.5
357,731	+	MPMX19_04904	0.77	+0.3
357,731	+	MPMX19_04904	0.77	-0.9
357,731	+	MPMX19_04904	0.77	-0.9
357,731	+	MPMX19_04904	0.77	+0.7
357,731	+	MPMX19_04904	0.77	-0.2
357,731	+	MPMX19_04904	0.77	-0.3
357,731	+	MPMX19_04904	0.77	+0.7
357,731	+	MPMX19_04904	0.77	-0.9
357,731	+	MPMX19_04904	0.77	-0.9
357,731	+	MPMX19_04904	0.77	-0.3
357,731	+	MPMX19_04904	0.77	+2.7
357,731	+	MPMX19_04904	0.77	-0.3
357,731	+	MPMX19_04904	0.77	+1.7
357,731	+	MPMX19_04904	0.77	-0.2
357,731	+	MPMX19_04904	0.77	-0.3
357,731	+	MPMX19_04904	0.77	+0.2
357,731	+	MPMX19_04904	0.77	+0.3
357,731	+	MPMX19_04904	0.77	-0.5
357,731	+	MPMX19_04904	0.77	+0.7
357,731	+	MPMX19_04904	0.77	+1.1
357,731	+	MPMX19_04904	0.77	-1.3
357,731	+	MPMX19_04904	0.77	-1.5
357,732	-	MPMX19_04904	0.77	-0.3
357,732	-	MPMX19_04904	0.77	+2.2
357,732	-	MPMX19_04904	0.77	-0.2
357,732	-	MPMX19_04904	0.77	+0.9
357,732	-	MPMX19_04904	0.77	-0.3
357,732	-	MPMX19_04904	0.77	+0.3
357,732	-	MPMX19_04904	0.77	+1.2
357,732	-	MPMX19_04904	0.77	-0.7
357,732	-	MPMX19_04904	0.77	-0.7
357,732	-	MPMX19_04904	0.77	-0.3
357,732	-	MPMX19_04904	0.77	+0.1
357,732	-	MPMX19_04904	0.77	+0.1
357,732	-	MPMX19_04904	0.77	-0.7
357,732	-	MPMX19_04904	0.77	+0.3
357,732	-	MPMX19_04904	0.77	-0.3
357,732	-	MPMX19_04904	0.77	-0.2
357,732	-	MPMX19_04904	0.77	-0.7
357,732	-	MPMX19_04904	0.77	+0.0
357,732	-	MPMX19_04904	0.77	-0.3
357,732	-	MPMX19_04904	0.77	+0.9
357,732	-	MPMX19_04904	0.77	+0.1
357,732	-	MPMX19_04904	0.77	+1.1
357,732	-	MPMX19_04904	0.77	-1.0
357,732	-	MPMX19_04904	0.77	+0.2
357,732	-	MPMX19_04904	0.77	-1.5
358,142	+	MPMX19_04904	0.85	-0.3
358,142	+	MPMX19_04904	0.85	+0.1
358,142	+	MPMX19_04904	0.85	+0.3
358,142	+	MPMX19_04904	0.85	-0.5
358,142	+	MPMX19_04904	0.85	+1.1
358,142	+	MPMX19_04904	0.85	+0.2
358,142	+	MPMX19_04904	0.85	+0.1
358,143	-	MPMX19_04904	0.85	+0.9
358,143	-	MPMX19_04904	0.85	-1.5
358,143	-	MPMX19_04904	0.85	-0.9
358,143	-	MPMX19_04904	0.85	+0.1
358,143	-	MPMX19_04904	0.85	+0.8
358,280	+	MPMX19_04904	0.88	-0.3
358,280	+	MPMX19_04904	0.88	+0.1
358,281	-	MPMX19_04904	0.88	-0.3
358,281	-	MPMX19_04904	0.88	-0.9
358,281	-	MPMX19_04904	0.88	-0.2
358,313	+	MPMX19_04904	0.89	+0.1
358,313	+	MPMX19_04904	0.89	-2.3
358,313	+	MPMX19_04904	0.89	+0.1
358,313	+	MPMX19_04904	0.89	-0.7
358,313	+	MPMX19_04904	0.89	-0.9
358,313	+	MPMX19_04904	0.89	+1.7
358,314	-	MPMX19_04904	0.89	+0.1
358,314	-	MPMX19_04904	0.89	+0.7
358,314	-	MPMX19_04904	0.89	+1.1
358,314	-	MPMX19_04904	0.89	+1.1
358,424	+			+1.2
358,424	+			-0.2
358,424	+			+0.7
358,424	+			+0.9
358,424	+			-0.3
358,425	-			+0.7
358,425	-			+0.1
358,425	-			-0.3
358,425	-			+1.0
358,544	+			-1.5
358,545	-			+0.3
358,545	-			+0.1
358,545	-			-1.2
358,631	+			+1.2
358,631	+			+1.2
358,631	+			+1.1
358,631	+			-0.6
358,631	+			-0.1
358,631	+			-0.3
358,631	+			+0.7
358,631	+			-0.2
358,631	+			+3.0
358,631	+			+1.7
358,631	+			+0.1
358,631	+			-0.2
358,632	-			+0.3
358,632	-			+1.1
358,632	-			+0.3
358,632	-			+0.9
358,632	-			+0.9
358,632	-			+0.1
358,632	-			-0.9
358,632	-			+0.7
358,640	+			+0.7
358,640	+			+2.1
358,641	-			+1.4
358,641	-			-1.2
358,641	-			-0.7
358,698	+			+0.5
358,699	-			-0.7
358,699	-			+0.9
358,729	+			+1.7
358,729	+			+0.1
358,730	-			+0.3
358,781	-			+0.8
358,843	+			-1.2
358,843	+			+1.7
358,843	+			+2.1
358,843	+			-0.9
358,843	+			-0.9
358,844	-			-2.5
358,844	-			-1.5
358,844	-			+1.1
358,844	-			-1.5
358,844	-			+0.7
358,844	-			-0.8
358,844	-			-1.5
358,844	-			+0.9
358,844	-			+1.0
358,845	+			-1.2
358,845	+			+0.4
358,845	+			+0.7
358,845	+			+1.7
358,845	+			+0.9
358,845	+			-0.1
358,845	+			-0.7
358,845	+			-0.9
358,846	-			-0.3
358,846	-			-0.5
358,846	-			+0.3
358,846	-			-1.2
358,846	-			-0.7
358,846	-			-1.8
358,846	-			+0.1
358,846	-			+0.3
358,846	-			+0.1
358,846	-			+0.3
358,846	-			-1.3
358,846	-			-0.2
358,922	+			+1.7
358,923	-			-0.7
358,923	-			+0.4
358,923	-			-0.9
358,923	-			+0.1
358,923	-			-0.4
358,938	+			-0.3
358,938	+			+2.5
358,939	-			-1.3
358,939	-			+0.1
358,939	-			+0.3
358,939	-			-0.3
358,939	-			-1.7
359,587	+	MPMX19_04905	0.34	-0.2
359,587	+	MPMX19_04905	0.34	-0.9
359,587	+	MPMX19_04905	0.34	-0.8
359,587	+	MPMX19_04905	0.34	-2.2
359,587	+	MPMX19_04905	0.34	+1.7
359,587	+	MPMX19_04905	0.34	-0.1
359,587	+	MPMX19_04905	0.34	-3.4
359,588	-	MPMX19_04905	0.34	-0.5
359,588	-	MPMX19_04905	0.34	-1.2
359,588	-	MPMX19_04905	0.34	-0.5
359,588	-	MPMX19_04905	0.34	-1.2
359,596	+	MPMX19_04905	0.34	-1.3

Or see this region's nucleotide sequence