Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04677

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04676 and MPMX19_04677 are separated by 204 nucleotidesMPMX19_04677 and MPMX19_04678 are separated by 59 nucleotides MPMX19_04676: MPMX19_04676 - Acylamidase, at 61,444 to 62,850 _04676 MPMX19_04677: MPMX19_04677 - Sulfate/thiosulfate import ATP-binding protein CysA, at 63,055 to 64,173 _04677 MPMX19_04678: MPMX19_04678 - hypothetical protein, at 64,233 to 65,279 _04678 Position (kb) 63 64 65Strain fitness (log2 ratio) -2 -1 0 1 2at 62.208 kb on + strand, within MPMX19_04676at 62.208 kb on + strand, within MPMX19_04676at 62.209 kb on - strand, within MPMX19_04676at 62.209 kb on - strand, within MPMX19_04676at 62.547 kb on - strand, within MPMX19_04676at 62.561 kb on + strand, within MPMX19_04676at 62.561 kb on + strand, within MPMX19_04676at 62.561 kb on + strand, within MPMX19_04676at 62.561 kb on + strand, within MPMX19_04676at 62.561 kb on + strand, within MPMX19_04676at 62.561 kb on + strand, within MPMX19_04676at 62.562 kb on - strand, within MPMX19_04676at 62.562 kb on - strand, within MPMX19_04676at 62.562 kb on - strand, within MPMX19_04676at 62.562 kb on - strand, within MPMX19_04676at 62.562 kb on - strand, within MPMX19_04676at 62.562 kb on - strand, within MPMX19_04676at 62.562 kb on - strand, within MPMX19_04676at 62.562 kb on - strand, within MPMX19_04676at 62.562 kb on - strand, within MPMX19_04676at 62.886 kb on + strandat 62.886 kb on + strandat 62.886 kb on + strandat 62.887 kb on - strandat 62.960 kb on + strandat 63.130 kb on + strandat 63.130 kb on + strandat 63.159 kb on + strandat 63.159 kb on + strandat 63.343 kb on + strand, within MPMX19_04677at 63.343 kb on + strand, within MPMX19_04677at 63.343 kb on + strand, within MPMX19_04677at 63.343 kb on + strand, within MPMX19_04677at 63.343 kb on + strand, within MPMX19_04677at 63.343 kb on + strand, within MPMX19_04677at 63.343 kb on + strand, within MPMX19_04677at 63.343 kb on + strand, within MPMX19_04677at 63.344 kb on - strand, within MPMX19_04677at 63.344 kb on - strand, within MPMX19_04677at 63.344 kb on - strand, within MPMX19_04677at 63.385 kb on + strand, within MPMX19_04677at 63.386 kb on - strand, within MPMX19_04677at 63.386 kb on - strand, within MPMX19_04677at 63.386 kb on - strand, within MPMX19_04677at 64.435 kb on + strand, within MPMX19_04678at 64.436 kb on - strand, within MPMX19_04678at 64.572 kb on + strand, within MPMX19_04678at 64.572 kb on + strand, within MPMX19_04678at 64.572 kb on + strand, within MPMX19_04678at 64.573 kb on - strand, within MPMX19_04678at 64.573 kb on - strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.576 kb on - strand, within MPMX19_04678at 64.576 kb on - strand, within MPMX19_04678at 64.576 kb on - strand, within MPMX19_04678at 64.576 kb on - strand, within MPMX19_04678at 64.576 kb on - strand, within MPMX19_04678at 64.576 kb on - strand, within MPMX19_04678at 64.576 kb on - strand, within MPMX19_04678at 64.576 kb on - strand, within MPMX19_04678at 64.576 kb on - strand, within MPMX19_04678at 64.647 kb on + strand, within MPMX19_04678at 64.647 kb on + strand, within MPMX19_04678at 64.647 kb on + strand, within MPMX19_04678at 64.647 kb on + strand, within MPMX19_04678at 64.647 kb on + strand, within MPMX19_04678at 64.648 kb on - strand, within MPMX19_04678at 64.648 kb on - strand, within MPMX19_04678at 64.648 kb on - strand, within MPMX19_04678at 64.648 kb on - strand, within MPMX19_04678at 64.648 kb on - strand, within MPMX19_04678at 64.648 kb on - strand, within MPMX19_04678at 64.648 kb on - strand, within MPMX19_04678at 64.648 kb on - strand, within MPMX19_04678at 64.648 kb on - strand, within MPMX19_04678at 65.109 kb on + strand, within MPMX19_04678at 65.109 kb on + strand, within MPMX19_04678at 65.109 kb on + strand, within MPMX19_04678at 65.110 kb on - strand, within MPMX19_04678at 65.110 kb on - strand, within MPMX19_04678at 65.110 kb on - strand, within MPMX19_04678

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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62,208 + MPMX19_04676 0.54 +0.1
62,208 + MPMX19_04676 0.54 -1.9
62,209 - MPMX19_04676 0.54 -0.7
62,209 - MPMX19_04676 0.54 -1.3
62,547 - MPMX19_04676 0.78 -0.1
62,561 + MPMX19_04676 0.79 -1.5
62,561 + MPMX19_04676 0.79 -1.1
62,561 + MPMX19_04676 0.79 -1.4
62,561 + MPMX19_04676 0.79 -1.4
62,561 + MPMX19_04676 0.79 -1.1
62,561 + MPMX19_04676 0.79 -1.1
62,562 - MPMX19_04676 0.79 -0.9
62,562 - MPMX19_04676 0.79 +0.1
62,562 - MPMX19_04676 0.79 -0.5
62,562 - MPMX19_04676 0.79 -0.8
62,562 - MPMX19_04676 0.79 +0.9
62,562 - MPMX19_04676 0.79 -1.1
62,562 - MPMX19_04676 0.79 +0.1
62,562 - MPMX19_04676 0.79 +0.1
62,562 - MPMX19_04676 0.79 -0.9
62,886 + -1.2
62,886 + -0.7
62,886 + +0.1
62,887 - -0.7
62,960 + -1.3
63,130 + +0.1
63,130 + -0.5
63,159 + -0.3
63,159 + -0.2
63,343 + MPMX19_04677 0.26 -1.7
63,343 + MPMX19_04677 0.26 -0.9
63,343 + MPMX19_04677 0.26 +0.1
63,343 + MPMX19_04677 0.26 +0.8
63,343 + MPMX19_04677 0.26 +0.2
63,343 + MPMX19_04677 0.26 -0.4
63,343 + MPMX19_04677 0.26 -0.8
63,343 + MPMX19_04677 0.26 -1.1
63,344 - MPMX19_04677 0.26 -0.3
63,344 - MPMX19_04677 0.26 +0.3
63,344 - MPMX19_04677 0.26 -1.8
63,385 + MPMX19_04677 0.29 +0.4
63,386 - MPMX19_04677 0.30 +0.3
63,386 - MPMX19_04677 0.30 +0.1
63,386 - MPMX19_04677 0.30 +0.1
64,435 + MPMX19_04678 0.19 -0.3
64,436 - MPMX19_04678 0.19 -0.1
64,572 + MPMX19_04678 0.32 +0.1
64,572 + MPMX19_04678 0.32 +1.3
64,572 + MPMX19_04678 0.32 -0.7
64,573 - MPMX19_04678 0.32 +0.1
64,573 - MPMX19_04678 0.32 -0.5
64,575 + MPMX19_04678 0.33 -1.1
64,575 + MPMX19_04678 0.33 -0.3
64,575 + MPMX19_04678 0.33 -1.1
64,575 + MPMX19_04678 0.33 -0.7
64,575 + MPMX19_04678 0.33 +1.2
64,575 + MPMX19_04678 0.33 -0.8
64,575 + MPMX19_04678 0.33 -0.7
64,575 + MPMX19_04678 0.33 +2.2
64,575 + MPMX19_04678 0.33 +0.1
64,575 + MPMX19_04678 0.33 -0.3
64,575 + MPMX19_04678 0.33 -0.7
64,575 + MPMX19_04678 0.33 +0.1
64,576 - MPMX19_04678 0.33 -0.3
64,576 - MPMX19_04678 0.33 +1.7
64,576 - MPMX19_04678 0.33 +0.9
64,576 - MPMX19_04678 0.33 +0.7
64,576 - MPMX19_04678 0.33 +0.1
64,576 - MPMX19_04678 0.33 -1.6
64,576 - MPMX19_04678 0.33 -0.6
64,576 - MPMX19_04678 0.33 -1.0
64,576 - MPMX19_04678 0.33 -0.3
64,647 + MPMX19_04678 0.40 -1.5
64,647 + MPMX19_04678 0.40 +1.3
64,647 + MPMX19_04678 0.40 -1.2
64,647 + MPMX19_04678 0.40 +0.2
64,647 + MPMX19_04678 0.40 -0.5
64,648 - MPMX19_04678 0.40 +1.7
64,648 - MPMX19_04678 0.40 -1.7
64,648 - MPMX19_04678 0.40 -0.9
64,648 - MPMX19_04678 0.40 -0.3
64,648 - MPMX19_04678 0.40 +0.1
64,648 - MPMX19_04678 0.40 -1.4
64,648 - MPMX19_04678 0.40 -2.0
64,648 - MPMX19_04678 0.40 +0.2
64,648 - MPMX19_04678 0.40 +2.2
65,109 + MPMX19_04678 0.84 +0.4
65,109 + MPMX19_04678 0.84 -0.1
65,109 + MPMX19_04678 0.84 -2.5
65,110 - MPMX19_04678 0.84 -0.8
65,110 - MPMX19_04678 0.84 -1.7
65,110 - MPMX19_04678 0.84 +0.7

Or see this region's nucleotide sequence