Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04676

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04675 and MPMX19_04676 are separated by 36 nucleotidesMPMX19_04676 and MPMX19_04677 are separated by 204 nucleotides MPMX19_04675: MPMX19_04675 - HTH-type transcriptional regulator PgrR, at 60,514 to 61,407 _04675 MPMX19_04676: MPMX19_04676 - Acylamidase, at 61,444 to 62,850 _04676 MPMX19_04677: MPMX19_04677 - Sulfate/thiosulfate import ATP-binding protein CysA, at 63,055 to 64,173 _04677 Position (kb) 61 62 63Strain fitness (log2 ratio) -3 -2 -1 0 1at 60.444 kb on - strandat 60.444 kb on - strandat 60.472 kb on + strandat 60.480 kb on - strandat 60.496 kb on + strandat 60.496 kb on + strandat 60.496 kb on + strandat 60.496 kb on + strandat 60.804 kb on + strand, within MPMX19_04675at 60.804 kb on + strand, within MPMX19_04675at 60.805 kb on - strand, within MPMX19_04675at 60.871 kb on + strand, within MPMX19_04675at 60.872 kb on - strand, within MPMX19_04675at 61.033 kb on + strand, within MPMX19_04675at 61.033 kb on + strand, within MPMX19_04675at 61.033 kb on + strand, within MPMX19_04675at 61.033 kb on + strand, within MPMX19_04675at 61.034 kb on - strand, within MPMX19_04675at 61.034 kb on - strand, within MPMX19_04675at 61.034 kb on - strand, within MPMX19_04675at 61.111 kb on + strand, within MPMX19_04675at 61.111 kb on + strand, within MPMX19_04675at 61.112 kb on - strand, within MPMX19_04675at 61.112 kb on - strand, within MPMX19_04675at 61.112 kb on - strand, within MPMX19_04675at 61.112 kb on - strand, within MPMX19_04675at 61.121 kb on + strand, within MPMX19_04675at 61.122 kb on - strand, within MPMX19_04675at 61.122 kb on - strand, within MPMX19_04675at 61.122 kb on - strand, within MPMX19_04675at 61.240 kb on + strand, within MPMX19_04675at 61.240 kb on + strand, within MPMX19_04675at 61.240 kb on + strand, within MPMX19_04675at 61.240 kb on + strand, within MPMX19_04675at 61.240 kb on + strand, within MPMX19_04675at 61.240 kb on + strand, within MPMX19_04675at 61.240 kb on + strand, within MPMX19_04675at 61.240 kb on + strand, within MPMX19_04675at 61.240 kb on + strand, within MPMX19_04675at 61.241 kb on - strand, within MPMX19_04675at 61.241 kb on - strand, within MPMX19_04675at 61.241 kb on - strand, within MPMX19_04675at 61.241 kb on - strand, within MPMX19_04675at 61.315 kb on + strand, within MPMX19_04675at 61.316 kb on - strand, within MPMX19_04675at 61.327 kb on + strandat 61.327 kb on + strandat 61.327 kb on + strandat 61.327 kb on + strandat 61.327 kb on + strandat 61.328 kb on - strandat 61.328 kb on - strandat 61.328 kb on - strandat 61.336 kb on + strandat 61.336 kb on + strandat 61.336 kb on + strandat 61.336 kb on + strandat 61.336 kb on + strandat 61.337 kb on - strandat 61.337 kb on - strandat 61.337 kb on - strandat 61.337 kb on - strandat 61.337 kb on - strandat 61.337 kb on - strandat 61.339 kb on + strandat 61.339 kb on + strandat 61.339 kb on + strandat 61.728 kb on + strand, within MPMX19_04676at 61.763 kb on + strand, within MPMX19_04676at 61.764 kb on - strand, within MPMX19_04676at 61.764 kb on - strand, within MPMX19_04676at 61.764 kb on - strand, within MPMX19_04676at 61.764 kb on - strand, within MPMX19_04676at 61.764 kb on - strand, within MPMX19_04676at 61.796 kb on + strand, within MPMX19_04676at 61.796 kb on + strand, within MPMX19_04676at 61.796 kb on + strand, within MPMX19_04676at 61.796 kb on + strand, within MPMX19_04676at 61.796 kb on + strand, within MPMX19_04676at 61.797 kb on - strand, within MPMX19_04676at 61.797 kb on - strand, within MPMX19_04676at 61.797 kb on - strand, within MPMX19_04676at 61.797 kb on - strand, within MPMX19_04676at 61.797 kb on - strand, within MPMX19_04676at 61.797 kb on - strand, within MPMX19_04676at 61.797 kb on - strand, within MPMX19_04676at 61.797 kb on - strand, within MPMX19_04676at 62.208 kb on + strand, within MPMX19_04676at 62.208 kb on + strand, within MPMX19_04676at 62.209 kb on - strand, within MPMX19_04676at 62.209 kb on - strand, within MPMX19_04676at 62.547 kb on - strand, within MPMX19_04676at 62.561 kb on + strand, within MPMX19_04676at 62.561 kb on + strand, within MPMX19_04676at 62.561 kb on + strand, within MPMX19_04676at 62.561 kb on + strand, within MPMX19_04676at 62.561 kb on + strand, within MPMX19_04676at 62.561 kb on + strand, within MPMX19_04676at 62.562 kb on - strand, within MPMX19_04676at 62.562 kb on - strand, within MPMX19_04676at 62.562 kb on - strand, within MPMX19_04676at 62.562 kb on - strand, within MPMX19_04676at 62.562 kb on - strand, within MPMX19_04676at 62.562 kb on - strand, within MPMX19_04676at 62.562 kb on - strand, within MPMX19_04676at 62.562 kb on - strand, within MPMX19_04676at 62.562 kb on - strand, within MPMX19_04676at 62.886 kb on + strandat 62.886 kb on + strandat 62.886 kb on + strandat 62.887 kb on - strandat 62.960 kb on + strandat 63.130 kb on + strandat 63.130 kb on + strandat 63.159 kb on + strandat 63.159 kb on + strandat 63.343 kb on + strand, within MPMX19_04677at 63.343 kb on + strand, within MPMX19_04677at 63.343 kb on + strand, within MPMX19_04677at 63.343 kb on + strand, within MPMX19_04677at 63.343 kb on + strand, within MPMX19_04677at 63.343 kb on + strand, within MPMX19_04677at 63.343 kb on + strand, within MPMX19_04677at 63.343 kb on + strand, within MPMX19_04677at 63.344 kb on - strand, within MPMX19_04677at 63.344 kb on - strand, within MPMX19_04677at 63.344 kb on - strand, within MPMX19_04677at 63.385 kb on + strand, within MPMX19_04677at 63.386 kb on - strand, within MPMX19_04677at 63.386 kb on - strand, within MPMX19_04677at 63.386 kb on - strand, within MPMX19_04677

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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60,444 - +0.1
60,444 - +0.9
60,472 + -0.7
60,480 - +0.7
60,496 + +0.4
60,496 + -2.1
60,496 + -2.1
60,496 + +0.3
60,804 + MPMX19_04675 0.32 -0.9
60,804 + MPMX19_04675 0.32 -1.3
60,805 - MPMX19_04675 0.33 -0.7
60,871 + MPMX19_04675 0.40 -1.1
60,872 - MPMX19_04675 0.40 -2.1
61,033 + MPMX19_04675 0.58 -0.9
61,033 + MPMX19_04675 0.58 +0.1
61,033 + MPMX19_04675 0.58 +1.1
61,033 + MPMX19_04675 0.58 +0.2
61,034 - MPMX19_04675 0.58 -0.6
61,034 - MPMX19_04675 0.58 -1.8
61,034 - MPMX19_04675 0.58 +0.9
61,111 + MPMX19_04675 0.67 -0.9
61,111 + MPMX19_04675 0.67 +0.1
61,112 - MPMX19_04675 0.67 -0.1
61,112 - MPMX19_04675 0.67 -3.1
61,112 - MPMX19_04675 0.67 -0.9
61,112 - MPMX19_04675 0.67 -1.1
61,121 + MPMX19_04675 0.68 -1.1
61,122 - MPMX19_04675 0.68 -0.7
61,122 - MPMX19_04675 0.68 -0.9
61,122 - MPMX19_04675 0.68 -0.8
61,240 + MPMX19_04675 0.81 +0.1
61,240 + MPMX19_04675 0.81 -0.9
61,240 + MPMX19_04675 0.81 +1.1
61,240 + MPMX19_04675 0.81 -0.3
61,240 + MPMX19_04675 0.81 -1.8
61,240 + MPMX19_04675 0.81 -1.3
61,240 + MPMX19_04675 0.81 -1.7
61,240 + MPMX19_04675 0.81 +0.9
61,240 + MPMX19_04675 0.81 -0.3
61,241 - MPMX19_04675 0.81 -0.1
61,241 - MPMX19_04675 0.81 -1.8
61,241 - MPMX19_04675 0.81 +0.1
61,241 - MPMX19_04675 0.81 -1.1
61,315 + MPMX19_04675 0.90 -1.8
61,316 - MPMX19_04675 0.90 -1.5
61,327 + +1.7
61,327 + -0.3
61,327 + -1.5
61,327 + -1.7
61,327 + -1.0
61,328 - -0.6
61,328 - -1.1
61,328 - -0.5
61,336 + -1.3
61,336 + -0.5
61,336 + +0.4
61,336 + +0.3
61,336 + -1.2
61,337 - +0.3
61,337 - -0.3
61,337 - -1.9
61,337 - +1.2
61,337 - +0.5
61,337 - -1.4
61,339 + +1.1
61,339 + +0.3
61,339 + -0.9
61,728 + MPMX19_04676 0.20 +0.4
61,763 + MPMX19_04676 0.23 -1.1
61,764 - MPMX19_04676 0.23 -0.7
61,764 - MPMX19_04676 0.23 -0.9
61,764 - MPMX19_04676 0.23 +0.9
61,764 - MPMX19_04676 0.23 -0.1
61,764 - MPMX19_04676 0.23 -1.3
61,796 + MPMX19_04676 0.25 -0.5
61,796 + MPMX19_04676 0.25 -0.7
61,796 + MPMX19_04676 0.25 -0.7
61,796 + MPMX19_04676 0.25 -0.7
61,796 + MPMX19_04676 0.25 -0.8
61,797 - MPMX19_04676 0.25 -1.8
61,797 - MPMX19_04676 0.25 -1.1
61,797 - MPMX19_04676 0.25 +0.7
61,797 - MPMX19_04676 0.25 -1.5
61,797 - MPMX19_04676 0.25 +1.1
61,797 - MPMX19_04676 0.25 +1.2
61,797 - MPMX19_04676 0.25 +0.7
61,797 - MPMX19_04676 0.25 +1.2
62,208 + MPMX19_04676 0.54 +0.1
62,208 + MPMX19_04676 0.54 -1.9
62,209 - MPMX19_04676 0.54 -0.7
62,209 - MPMX19_04676 0.54 -1.3
62,547 - MPMX19_04676 0.78 -0.1
62,561 + MPMX19_04676 0.79 -1.5
62,561 + MPMX19_04676 0.79 -1.1
62,561 + MPMX19_04676 0.79 -1.4
62,561 + MPMX19_04676 0.79 -1.4
62,561 + MPMX19_04676 0.79 -1.1
62,561 + MPMX19_04676 0.79 -1.1
62,562 - MPMX19_04676 0.79 -0.9
62,562 - MPMX19_04676 0.79 +0.1
62,562 - MPMX19_04676 0.79 -0.5
62,562 - MPMX19_04676 0.79 -0.8
62,562 - MPMX19_04676 0.79 +0.9
62,562 - MPMX19_04676 0.79 -1.1
62,562 - MPMX19_04676 0.79 +0.1
62,562 - MPMX19_04676 0.79 +0.1
62,562 - MPMX19_04676 0.79 -0.9
62,886 + -1.2
62,886 + -0.7
62,886 + +0.1
62,887 - -0.7
62,960 + -1.3
63,130 + +0.1
63,130 + -0.5
63,159 + -0.3
63,159 + -0.2
63,343 + MPMX19_04677 0.26 -1.7
63,343 + MPMX19_04677 0.26 -0.9
63,343 + MPMX19_04677 0.26 +0.1
63,343 + MPMX19_04677 0.26 +0.8
63,343 + MPMX19_04677 0.26 +0.2
63,343 + MPMX19_04677 0.26 -0.4
63,343 + MPMX19_04677 0.26 -0.8
63,343 + MPMX19_04677 0.26 -1.1
63,344 - MPMX19_04677 0.26 -0.3
63,344 - MPMX19_04677 0.26 +0.3
63,344 - MPMX19_04677 0.26 -1.8
63,385 + MPMX19_04677 0.29 +0.4
63,386 - MPMX19_04677 0.30 +0.3
63,386 - MPMX19_04677 0.30 +0.1
63,386 - MPMX19_04677 0.30 +0.1

Or see this region's nucleotide sequence