Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04675

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04673 and MPMX19_04674 are separated by 22 nucleotidesMPMX19_04674 and MPMX19_04675 are separated by 262 nucleotidesMPMX19_04675 and MPMX19_04676 are separated by 36 nucleotides MPMX19_04673: MPMX19_04673 - Purine ribonucleoside efflux pump NepI, at 58,661 to 59,878 _04673 MPMX19_04674: MPMX19_04674 - hypothetical protein, at 59,901 to 60,251 _04674 MPMX19_04675: MPMX19_04675 - HTH-type transcriptional regulator PgrR, at 60,514 to 61,407 _04675 MPMX19_04676: MPMX19_04676 - Acylamidase, at 61,444 to 62,850 _04676 Position (kb) 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1at 59.885 kb on + strandat 59.885 kb on + strandat 59.885 kb on + strandat 59.885 kb on + strandat 59.885 kb on + strandat 59.886 kb on - strandat 59.886 kb on - strandat 59.886 kb on - strandat 59.999 kb on - strand, within MPMX19_04674at 59.999 kb on - strand, within MPMX19_04674at 59.999 kb on - strand, within MPMX19_04674at 60.005 kb on - strand, within MPMX19_04674at 60.043 kb on + strand, within MPMX19_04674at 60.043 kb on + strand, within MPMX19_04674at 60.043 kb on + strand, within MPMX19_04674at 60.043 kb on + strand, within MPMX19_04674at 60.043 kb on + strand, within MPMX19_04674at 60.043 kb on + strand, within MPMX19_04674at 60.044 kb on - strand, within MPMX19_04674at 60.044 kb on - strand, within MPMX19_04674at 60.044 kb on - strand, within MPMX19_04674at 60.044 kb on - strand, within MPMX19_04674at 60.046 kb on + strand, within MPMX19_04674at 60.046 kb on + strand, within MPMX19_04674at 60.046 kb on + strand, within MPMX19_04674at 60.046 kb on + strand, within MPMX19_04674at 60.046 kb on + strand, within MPMX19_04674at 60.046 kb on + strand, within MPMX19_04674at 60.046 kb on + strand, within MPMX19_04674at 60.046 kb on + strand, within MPMX19_04674at 60.046 kb on + strand, within MPMX19_04674at 60.046 kb on + strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.047 kb on - strand, within MPMX19_04674at 60.115 kb on + strand, within MPMX19_04674at 60.115 kb on + strand, within MPMX19_04674at 60.115 kb on + strand, within MPMX19_04674at 60.115 kb on + strand, within MPMX19_04674at 60.116 kb on - strand, within MPMX19_04674at 60.116 kb on - strand, within MPMX19_04674at 60.116 kb on - strand, within MPMX19_04674at 60.116 kb on - strand, within MPMX19_04674at 60.140 kb on - strand, within MPMX19_04674at 60.140 kb on - strand, within MPMX19_04674at 60.197 kb on + strand, within MPMX19_04674at 60.197 kb on + strand, within MPMX19_04674at 60.198 kb on - strand, within MPMX19_04674at 60.198 kb on - strand, within MPMX19_04674at 60.198 kb on - strand, within MPMX19_04674at 60.243 kb on + strandat 60.360 kb on - strandat 60.443 kb on + strandat 60.444 kb on - strandat 60.444 kb on - strandat 60.472 kb on + strandat 60.480 kb on - strandat 60.496 kb on + strandat 60.496 kb on + strandat 60.496 kb on + strandat 60.496 kb on + strandat 60.804 kb on + strand, within MPMX19_04675at 60.804 kb on + strand, within MPMX19_04675at 60.805 kb on - strand, within MPMX19_04675at 60.871 kb on + strand, within MPMX19_04675at 60.872 kb on - strand, within MPMX19_04675at 61.033 kb on + strand, within MPMX19_04675at 61.033 kb on + strand, within MPMX19_04675at 61.033 kb on + strand, within MPMX19_04675at 61.033 kb on + strand, within MPMX19_04675at 61.034 kb on - strand, within MPMX19_04675at 61.034 kb on - strand, within MPMX19_04675at 61.034 kb on - strand, within MPMX19_04675at 61.111 kb on + strand, within MPMX19_04675at 61.111 kb on + strand, within MPMX19_04675at 61.112 kb on - strand, within MPMX19_04675at 61.112 kb on - strand, within MPMX19_04675at 61.112 kb on - strand, within MPMX19_04675at 61.112 kb on - strand, within MPMX19_04675at 61.121 kb on + strand, within MPMX19_04675at 61.122 kb on - strand, within MPMX19_04675at 61.122 kb on - strand, within MPMX19_04675at 61.122 kb on - strand, within MPMX19_04675at 61.240 kb on + strand, within MPMX19_04675at 61.240 kb on + strand, within MPMX19_04675at 61.240 kb on + strand, within MPMX19_04675at 61.240 kb on + strand, within MPMX19_04675at 61.240 kb on + strand, within MPMX19_04675at 61.240 kb on + strand, within MPMX19_04675at 61.240 kb on + strand, within MPMX19_04675at 61.240 kb on + strand, within MPMX19_04675at 61.240 kb on + strand, within MPMX19_04675at 61.241 kb on - strand, within MPMX19_04675at 61.241 kb on - strand, within MPMX19_04675at 61.241 kb on - strand, within MPMX19_04675at 61.241 kb on - strand, within MPMX19_04675at 61.315 kb on + strand, within MPMX19_04675at 61.316 kb on - strand, within MPMX19_04675at 61.327 kb on + strandat 61.327 kb on + strandat 61.327 kb on + strandat 61.327 kb on + strandat 61.327 kb on + strandat 61.328 kb on - strandat 61.328 kb on - strandat 61.328 kb on - strandat 61.336 kb on + strandat 61.336 kb on + strandat 61.336 kb on + strandat 61.336 kb on + strandat 61.336 kb on + strandat 61.337 kb on - strandat 61.337 kb on - strandat 61.337 kb on - strandat 61.337 kb on - strandat 61.337 kb on - strandat 61.337 kb on - strandat 61.339 kb on + strandat 61.339 kb on + strandat 61.339 kb on + strandat 61.728 kb on + strand, within MPMX19_04676at 61.763 kb on + strand, within MPMX19_04676at 61.764 kb on - strand, within MPMX19_04676at 61.764 kb on - strand, within MPMX19_04676at 61.764 kb on - strand, within MPMX19_04676at 61.764 kb on - strand, within MPMX19_04676at 61.764 kb on - strand, within MPMX19_04676at 61.796 kb on + strand, within MPMX19_04676at 61.796 kb on + strand, within MPMX19_04676at 61.796 kb on + strand, within MPMX19_04676at 61.796 kb on + strand, within MPMX19_04676at 61.796 kb on + strand, within MPMX19_04676at 61.797 kb on - strand, within MPMX19_04676at 61.797 kb on - strand, within MPMX19_04676at 61.797 kb on - strand, within MPMX19_04676at 61.797 kb on - strand, within MPMX19_04676at 61.797 kb on - strand, within MPMX19_04676at 61.797 kb on - strand, within MPMX19_04676at 61.797 kb on - strand, within MPMX19_04676at 61.797 kb on - strand, within MPMX19_04676at 62.208 kb on + strand, within MPMX19_04676at 62.208 kb on + strand, within MPMX19_04676at 62.209 kb on - strand, within MPMX19_04676at 62.209 kb on - strand, within MPMX19_04676

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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59,885 + -0.1
59,885 + +0.9
59,885 + +0.2
59,885 + +1.7
59,885 + -1.1
59,886 - +0.7
59,886 - +0.1
59,886 - -0.7
59,999 - MPMX19_04674 0.28 +0.2
59,999 - MPMX19_04674 0.28 -0.3
59,999 - MPMX19_04674 0.28 -1.3
60,005 - MPMX19_04674 0.30 -0.1
60,043 + MPMX19_04674 0.40 -1.8
60,043 + MPMX19_04674 0.40 +0.8
60,043 + MPMX19_04674 0.40 -2.1
60,043 + MPMX19_04674 0.40 -1.1
60,043 + MPMX19_04674 0.40 +0.7
60,043 + MPMX19_04674 0.40 +0.1
60,044 - MPMX19_04674 0.41 +0.1
60,044 - MPMX19_04674 0.41 -1.7
60,044 - MPMX19_04674 0.41 -0.3
60,044 - MPMX19_04674 0.41 +0.3
60,046 + MPMX19_04674 0.41 -0.9
60,046 + MPMX19_04674 0.41 -1.1
60,046 + MPMX19_04674 0.41 +0.2
60,046 + MPMX19_04674 0.41 +0.1
60,046 + MPMX19_04674 0.41 -0.7
60,046 + MPMX19_04674 0.41 -0.9
60,046 + MPMX19_04674 0.41 -1.5
60,046 + MPMX19_04674 0.41 -1.5
60,046 + MPMX19_04674 0.41 -0.8
60,046 + MPMX19_04674 0.41 -1.0
60,047 - MPMX19_04674 0.42 -0.3
60,047 - MPMX19_04674 0.42 +0.1
60,047 - MPMX19_04674 0.42 -0.3
60,047 - MPMX19_04674 0.42 -1.8
60,047 - MPMX19_04674 0.42 -0.1
60,047 - MPMX19_04674 0.42 -0.2
60,047 - MPMX19_04674 0.42 +1.1
60,047 - MPMX19_04674 0.42 -0.7
60,047 - MPMX19_04674 0.42 +0.3
60,047 - MPMX19_04674 0.42 -0.7
60,047 - MPMX19_04674 0.42 +1.0
60,047 - MPMX19_04674 0.42 -0.1
60,047 - MPMX19_04674 0.42 -0.1
60,047 - MPMX19_04674 0.42 -0.3
60,047 - MPMX19_04674 0.42 -1.0
60,047 - MPMX19_04674 0.42 -2.3
60,047 - MPMX19_04674 0.42 -0.7
60,115 + MPMX19_04674 0.61 +0.2
60,115 + MPMX19_04674 0.61 -0.7
60,115 + MPMX19_04674 0.61 -1.8
60,115 + MPMX19_04674 0.61 -1.4
60,116 - MPMX19_04674 0.61 -0.3
60,116 - MPMX19_04674 0.61 -1.7
60,116 - MPMX19_04674 0.61 +0.4
60,116 - MPMX19_04674 0.61 -0.3
60,140 - MPMX19_04674 0.68 -0.5
60,140 - MPMX19_04674 0.68 +0.3
60,197 + MPMX19_04674 0.84 -0.9
60,197 + MPMX19_04674 0.84 -1.1
60,198 - MPMX19_04674 0.85 -1.5
60,198 - MPMX19_04674 0.85 -1.4
60,198 - MPMX19_04674 0.85 -0.9
60,243 + +0.1
60,360 - +0.1
60,443 + +1.7
60,444 - +0.1
60,444 - +0.9
60,472 + -0.7
60,480 - +0.7
60,496 + +0.4
60,496 + -2.1
60,496 + -2.1
60,496 + +0.3
60,804 + MPMX19_04675 0.32 -0.9
60,804 + MPMX19_04675 0.32 -1.3
60,805 - MPMX19_04675 0.33 -0.7
60,871 + MPMX19_04675 0.40 -1.1
60,872 - MPMX19_04675 0.40 -2.1
61,033 + MPMX19_04675 0.58 -0.9
61,033 + MPMX19_04675 0.58 +0.1
61,033 + MPMX19_04675 0.58 +1.1
61,033 + MPMX19_04675 0.58 +0.2
61,034 - MPMX19_04675 0.58 -0.6
61,034 - MPMX19_04675 0.58 -1.8
61,034 - MPMX19_04675 0.58 +0.9
61,111 + MPMX19_04675 0.67 -0.9
61,111 + MPMX19_04675 0.67 +0.1
61,112 - MPMX19_04675 0.67 -0.1
61,112 - MPMX19_04675 0.67 -3.1
61,112 - MPMX19_04675 0.67 -0.9
61,112 - MPMX19_04675 0.67 -1.1
61,121 + MPMX19_04675 0.68 -1.1
61,122 - MPMX19_04675 0.68 -0.7
61,122 - MPMX19_04675 0.68 -0.9
61,122 - MPMX19_04675 0.68 -0.8
61,240 + MPMX19_04675 0.81 +0.1
61,240 + MPMX19_04675 0.81 -0.9
61,240 + MPMX19_04675 0.81 +1.1
61,240 + MPMX19_04675 0.81 -0.3
61,240 + MPMX19_04675 0.81 -1.8
61,240 + MPMX19_04675 0.81 -1.3
61,240 + MPMX19_04675 0.81 -1.7
61,240 + MPMX19_04675 0.81 +0.9
61,240 + MPMX19_04675 0.81 -0.3
61,241 - MPMX19_04675 0.81 -0.1
61,241 - MPMX19_04675 0.81 -1.8
61,241 - MPMX19_04675 0.81 +0.1
61,241 - MPMX19_04675 0.81 -1.1
61,315 + MPMX19_04675 0.90 -1.8
61,316 - MPMX19_04675 0.90 -1.5
61,327 + +1.7
61,327 + -0.3
61,327 + -1.5
61,327 + -1.7
61,327 + -1.0
61,328 - -0.6
61,328 - -1.1
61,328 - -0.5
61,336 + -1.3
61,336 + -0.5
61,336 + +0.4
61,336 + +0.3
61,336 + -1.2
61,337 - +0.3
61,337 - -0.3
61,337 - -1.9
61,337 - +1.2
61,337 - +0.5
61,337 - -1.4
61,339 + +1.1
61,339 + +0.3
61,339 + -0.9
61,728 + MPMX19_04676 0.20 +0.4
61,763 + MPMX19_04676 0.23 -1.1
61,764 - MPMX19_04676 0.23 -0.7
61,764 - MPMX19_04676 0.23 -0.9
61,764 - MPMX19_04676 0.23 +0.9
61,764 - MPMX19_04676 0.23 -0.1
61,764 - MPMX19_04676 0.23 -1.3
61,796 + MPMX19_04676 0.25 -0.5
61,796 + MPMX19_04676 0.25 -0.7
61,796 + MPMX19_04676 0.25 -0.7
61,796 + MPMX19_04676 0.25 -0.7
61,796 + MPMX19_04676 0.25 -0.8
61,797 - MPMX19_04676 0.25 -1.8
61,797 - MPMX19_04676 0.25 -1.1
61,797 - MPMX19_04676 0.25 +0.7
61,797 - MPMX19_04676 0.25 -1.5
61,797 - MPMX19_04676 0.25 +1.1
61,797 - MPMX19_04676 0.25 +1.2
61,797 - MPMX19_04676 0.25 +0.7
61,797 - MPMX19_04676 0.25 +1.2
62,208 + MPMX19_04676 0.54 +0.1
62,208 + MPMX19_04676 0.54 -1.9
62,209 - MPMX19_04676 0.54 -0.7
62,209 - MPMX19_04676 0.54 -1.3

Or see this region's nucleotide sequence