Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04478

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04477 and MPMX19_04478 are separated by 60 nucleotidesMPMX19_04478 and MPMX19_04479 are separated by 59 nucleotides MPMX19_04477: MPMX19_04477 - hypothetical protein, at 844,776 to 845,339 _04477 MPMX19_04478: MPMX19_04478 - hypothetical protein, at 845,400 to 846,236 _04478 MPMX19_04479: MPMX19_04479 - N-ethylmaleimide reductase, at 846,296 to 847,378 _04479 Position (kb) 845 846 847Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 844.551 kb on + strandat 844.552 kb on - strandat 844.552 kb on - strandat 844.552 kb on - strandat 844.552 kb on - strandat 844.552 kb on - strandat 844.703 kb on + strandat 844.703 kb on + strandat 844.703 kb on + strandat 844.704 kb on - strandat 844.704 kb on - strandat 844.704 kb on - strandat 844.704 kb on - strandat 844.704 kb on - strandat 844.704 kb on - strandat 844.704 kb on - strandat 844.704 kb on - strandat 844.706 kb on - strandat 844.706 kb on - strandat 844.777 kb on + strandat 844.777 kb on + strandat 844.777 kb on + strandat 844.778 kb on - strandat 844.778 kb on - strandat 844.778 kb on - strandat 845.092 kb on + strand, within MPMX19_04477at 845.092 kb on + strand, within MPMX19_04477at 845.093 kb on - strand, within MPMX19_04477at 845.093 kb on - strand, within MPMX19_04477at 845.093 kb on - strand, within MPMX19_04477at 845.104 kb on + strand, within MPMX19_04477at 845.104 kb on + strand, within MPMX19_04477at 845.105 kb on - strand, within MPMX19_04477at 845.105 kb on - strand, within MPMX19_04477at 845.105 kb on - strand, within MPMX19_04477at 845.105 kb on - strand, within MPMX19_04477at 845.198 kb on - strand, within MPMX19_04477at 845.505 kb on + strand, within MPMX19_04478at 845.505 kb on + strand, within MPMX19_04478at 845.505 kb on + strand, within MPMX19_04478at 845.505 kb on + strand, within MPMX19_04478at 845.505 kb on + strand, within MPMX19_04478at 845.506 kb on - strand, within MPMX19_04478at 845.506 kb on - strand, within MPMX19_04478at 845.904 kb on + strand, within MPMX19_04478at 845.904 kb on + strand, within MPMX19_04478at 845.905 kb on - strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.976 kb on + strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 845.977 kb on - strand, within MPMX19_04478at 846.159 kb on + strandat 846.159 kb on + strandat 846.159 kb on + strandat 846.159 kb on + strandat 846.159 kb on + strandat 846.159 kb on + strandat 846.159 kb on + strandat 846.159 kb on + strandat 846.159 kb on + strandat 846.160 kb on - strandat 846.160 kb on - strandat 846.160 kb on - strandat 846.160 kb on - strandat 846.160 kb on - strandat 846.160 kb on - strandat 846.160 kb on - strandat 846.160 kb on - strandat 846.324 kb on - strandat 846.324 kb on - strandat 846.324 kb on - strandat 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.425 kb on + strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.426 kb on - strand, within MPMX19_04479at 846.428 kb on + strand, within MPMX19_04479at 846.428 kb on + strand, within MPMX19_04479at 846.428 kb on + strand, within MPMX19_04479at 846.428 kb on + strand, within MPMX19_04479at 846.428 kb on + strand, within MPMX19_04479at 846.428 kb on + strand, within MPMX19_04479at 846.428 kb on + strand, within MPMX19_04479at 846.429 kb on - strand, within MPMX19_04479at 846.429 kb on - strand, within MPMX19_04479at 846.429 kb on - strand, within MPMX19_04479at 846.429 kb on - strand, within MPMX19_04479at 846.429 kb on - strand, within MPMX19_04479at 846.429 kb on - strand, within MPMX19_04479at 846.429 kb on - strand, within MPMX19_04479at 846.429 kb on - strand, within MPMX19_04479at 846.429 kb on - strand, within MPMX19_04479at 846.429 kb on - strand, within MPMX19_04479at 846.429 kb on - strand, within MPMX19_04479at 846.497 kb on + strand, within MPMX19_04479at 846.497 kb on + strand, within MPMX19_04479at 846.498 kb on - strand, within MPMX19_04479at 846.498 kb on - strand, within MPMX19_04479at 846.498 kb on - strand, within MPMX19_04479at 846.518 kb on + strand, within MPMX19_04479at 846.518 kb on + strand, within MPMX19_04479at 846.519 kb on - strand, within MPMX19_04479at 846.519 kb on - strand, within MPMX19_04479at 846.519 kb on - strand, within MPMX19_04479at 846.519 kb on - strand, within MPMX19_04479at 846.519 kb on - strand, within MPMX19_04479at 846.519 kb on - strand, within MPMX19_04479at 846.833 kb on + strand, within MPMX19_04479at 846.834 kb on - strand, within MPMX19_04479at 846.834 kb on - strand, within MPMX19_04479at 846.834 kb on - strand, within MPMX19_04479at 846.884 kb on + strand, within MPMX19_04479at 846.885 kb on - strand, within MPMX19_04479at 846.885 kb on - strand, within MPMX19_04479at 846.885 kb on - strand, within MPMX19_04479at 846.885 kb on - strand, within MPMX19_04479at 846.885 kb on - strand, within MPMX19_04479at 847.040 kb on + strand, within MPMX19_04479at 847.040 kb on + strand, within MPMX19_04479at 847.040 kb on + strand, within MPMX19_04479at 847.040 kb on + strand, within MPMX19_04479at 847.040 kb on + strand, within MPMX19_04479at 847.040 kb on + strand, within MPMX19_04479at 847.041 kb on - strand, within MPMX19_04479at 847.041 kb on - strand, within MPMX19_04479at 847.041 kb on - strand, within MPMX19_04479at 847.041 kb on - strand, within MPMX19_04479at 847.041 kb on - strand, within MPMX19_04479at 847.041 kb on - strand, within MPMX19_04479at 847.041 kb on - strand, within MPMX19_04479at 847.041 kb on - strand, within MPMX19_04479at 847.076 kb on + strand, within MPMX19_04479at 847.076 kb on + strand, within MPMX19_04479at 847.076 kb on + strand, within MPMX19_04479at 847.076 kb on + strand, within MPMX19_04479at 847.076 kb on + strand, within MPMX19_04479at 847.076 kb on + strand, within MPMX19_04479at 847.077 kb on - strand, within MPMX19_04479at 847.077 kb on - strand, within MPMX19_04479at 847.077 kb on - strand, within MPMX19_04479at 847.077 kb on - strand, within MPMX19_04479at 847.077 kb on - strand, within MPMX19_04479at 847.077 kb on - strand, within MPMX19_04479at 847.077 kb on - strand, within MPMX19_04479at 847.078 kb on + strand, within MPMX19_04479at 847.078 kb on + strand, within MPMX19_04479at 847.078 kb on + strand, within MPMX19_04479at 847.078 kb on + strand, within MPMX19_04479at 847.079 kb on - strand, within MPMX19_04479at 847.079 kb on - strand, within MPMX19_04479at 847.079 kb on - strand, within MPMX19_04479at 847.079 kb on - strand, within MPMX19_04479at 847.079 kb on - strand, within MPMX19_04479at 847.079 kb on - strand, within MPMX19_04479at 847.133 kb on + strand, within MPMX19_04479at 847.133 kb on + strand, within MPMX19_04479at 847.133 kb on + strand, within MPMX19_04479at 847.134 kb on - strand, within MPMX19_04479at 847.134 kb on - strand, within MPMX19_04479at 847.134 kb on - strand, within MPMX19_04479at 847.134 kb on - strand, within MPMX19_04479

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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844,551 + -1.2
844,552 - -0.9
844,552 - -0.9
844,552 - -2.2
844,552 - -0.2
844,552 - -0.3
844,703 + -0.8
844,703 + -2.2
844,703 + +0.4
844,704 - -2.4
844,704 - -0.2
844,704 - -1.4
844,704 - -1.2
844,704 - -1.1
844,704 - -2.4
844,704 - +1.4
844,704 - -0.9
844,706 - +0.4
844,706 - +0.4
844,777 + +1.4
844,777 + -0.0
844,777 + -0.0
844,778 - -0.0
844,778 - +0.0
844,778 - -0.9
845,092 + MPMX19_04477 0.56 -0.2
845,092 + MPMX19_04477 0.56 -0.6
845,093 - MPMX19_04477 0.56 -2.5
845,093 - MPMX19_04477 0.56 +1.4
845,093 - MPMX19_04477 0.56 -0.2
845,104 + MPMX19_04477 0.58 -0.9
845,104 + MPMX19_04477 0.58 -1.8
845,105 - MPMX19_04477 0.58 -1.9
845,105 - MPMX19_04477 0.58 -0.7
845,105 - MPMX19_04477 0.58 -0.6
845,105 - MPMX19_04477 0.58 -0.9
845,198 - MPMX19_04477 0.75 +1.4
845,505 + MPMX19_04478 0.13 -0.7
845,505 + MPMX19_04478 0.13 -1.8
845,505 + MPMX19_04478 0.13 -0.9
845,505 + MPMX19_04478 0.13 +0.1
845,505 + MPMX19_04478 0.13 +0.8
845,506 - MPMX19_04478 0.13 +0.4
845,506 - MPMX19_04478 0.13 -0.2
845,904 + MPMX19_04478 0.60 -0.6
845,904 + MPMX19_04478 0.60 -1.3
845,905 - MPMX19_04478 0.60 -1.6
845,976 + MPMX19_04478 0.69 -1.1
845,976 + MPMX19_04478 0.69 -1.2
845,976 + MPMX19_04478 0.69 +0.4
845,976 + MPMX19_04478 0.69 -0.0
845,976 + MPMX19_04478 0.69 -1.6
845,976 + MPMX19_04478 0.69 -0.2
845,976 + MPMX19_04478 0.69 -1.3
845,976 + MPMX19_04478 0.69 -0.8
845,976 + MPMX19_04478 0.69 -3.0
845,976 + MPMX19_04478 0.69 -1.2
845,976 + MPMX19_04478 0.69 -1.8
845,977 - MPMX19_04478 0.69 -2.2
845,977 - MPMX19_04478 0.69 +0.1
845,977 - MPMX19_04478 0.69 -1.5
845,977 - MPMX19_04478 0.69 -1.4
845,977 - MPMX19_04478 0.69 -0.6
845,977 - MPMX19_04478 0.69 -2.5
845,977 - MPMX19_04478 0.69 -0.9
845,977 - MPMX19_04478 0.69 -2.4
845,977 - MPMX19_04478 0.69 -1.4
845,977 - MPMX19_04478 0.69 -0.1
845,977 - MPMX19_04478 0.69 +0.1
845,977 - MPMX19_04478 0.69 -1.0
845,977 - MPMX19_04478 0.69 -1.2
846,159 + -1.2
846,159 + -0.7
846,159 + +0.4
846,159 + -0.2
846,159 + -0.2
846,159 + -0.6
846,159 + +0.8
846,159 + +1.4
846,159 + -0.8
846,160 - -1.4
846,160 - -0.4
846,160 - -2.2
846,160 - +0.4
846,160 - -0.1
846,160 - -0.1
846,160 - +2.4
846,160 - -1.2
846,324 - -0.3
846,324 - +0.4
846,324 - +2.4
846,425 + MPMX19_04479 0.12 +0.4
846,425 + MPMX19_04479 0.12 -1.4
846,425 + MPMX19_04479 0.12 +0.4
846,425 + MPMX19_04479 0.12 -0.2
846,425 + MPMX19_04479 0.12 -1.4
846,425 + MPMX19_04479 0.12 -1.2
846,425 + MPMX19_04479 0.12 -0.4
846,425 + MPMX19_04479 0.12 -2.3
846,425 + MPMX19_04479 0.12 -0.6
846,425 + MPMX19_04479 0.12 -1.5
846,425 + MPMX19_04479 0.12 -2.2
846,425 + MPMX19_04479 0.12 -1.4
846,425 + MPMX19_04479 0.12 +0.9
846,425 + MPMX19_04479 0.12 +0.3
846,425 + MPMX19_04479 0.12 -0.0
846,425 + MPMX19_04479 0.12 -0.5
846,425 + MPMX19_04479 0.12 -1.1
846,425 + MPMX19_04479 0.12 +1.4
846,425 + MPMX19_04479 0.12 -1.1
846,425 + MPMX19_04479 0.12 -1.2
846,425 + MPMX19_04479 0.12 -1.4
846,425 + MPMX19_04479 0.12 +0.1
846,426 - MPMX19_04479 0.12 -0.4
846,426 - MPMX19_04479 0.12 -1.9
846,426 - MPMX19_04479 0.12 -0.8
846,426 - MPMX19_04479 0.12 +1.4
846,426 - MPMX19_04479 0.12 -0.8
846,426 - MPMX19_04479 0.12 -0.6
846,426 - MPMX19_04479 0.12 -0.8
846,426 - MPMX19_04479 0.12 +0.7
846,426 - MPMX19_04479 0.12 -0.1
846,426 - MPMX19_04479 0.12 +0.7
846,426 - MPMX19_04479 0.12 +0.2
846,426 - MPMX19_04479 0.12 -0.9
846,426 - MPMX19_04479 0.12 -0.2
846,426 - MPMX19_04479 0.12 -2.0
846,426 - MPMX19_04479 0.12 -1.5
846,426 - MPMX19_04479 0.12 +0.8
846,426 - MPMX19_04479 0.12 -0.9
846,426 - MPMX19_04479 0.12 -0.0
846,426 - MPMX19_04479 0.12 -1.4
846,426 - MPMX19_04479 0.12 -1.3
846,426 - MPMX19_04479 0.12 -2.6
846,428 + MPMX19_04479 0.12 +1.4
846,428 + MPMX19_04479 0.12 -0.4
846,428 + MPMX19_04479 0.12 +0.7
846,428 + MPMX19_04479 0.12 +1.4
846,428 + MPMX19_04479 0.12 -0.2
846,428 + MPMX19_04479 0.12 -2.3
846,428 + MPMX19_04479 0.12 +0.4
846,429 - MPMX19_04479 0.12 -0.0
846,429 - MPMX19_04479 0.12 -0.6
846,429 - MPMX19_04479 0.12 -0.2
846,429 - MPMX19_04479 0.12 -1.5
846,429 - MPMX19_04479 0.12 +0.4
846,429 - MPMX19_04479 0.12 -1.2
846,429 - MPMX19_04479 0.12 -1.4
846,429 - MPMX19_04479 0.12 -1.2
846,429 - MPMX19_04479 0.12 +1.0
846,429 - MPMX19_04479 0.12 +0.1
846,429 - MPMX19_04479 0.12 -0.3
846,497 + MPMX19_04479 0.19 -1.6
846,497 + MPMX19_04479 0.19 -0.2
846,498 - MPMX19_04479 0.19 -0.7
846,498 - MPMX19_04479 0.19 -0.6
846,498 - MPMX19_04479 0.19 -1.8
846,518 + MPMX19_04479 0.20 -1.4
846,518 + MPMX19_04479 0.20 -0.9
846,519 - MPMX19_04479 0.21 -0.9
846,519 - MPMX19_04479 0.21 -0.6
846,519 - MPMX19_04479 0.21 -1.1
846,519 - MPMX19_04479 0.21 -0.4
846,519 - MPMX19_04479 0.21 +0.7
846,519 - MPMX19_04479 0.21 -1.8
846,833 + MPMX19_04479 0.50 +0.8
846,834 - MPMX19_04479 0.50 -2.1
846,834 - MPMX19_04479 0.50 -1.4
846,834 - MPMX19_04479 0.50 +0.1
846,884 + MPMX19_04479 0.54 -1.2
846,885 - MPMX19_04479 0.54 +0.0
846,885 - MPMX19_04479 0.54 -1.6
846,885 - MPMX19_04479 0.54 -0.7
846,885 - MPMX19_04479 0.54 +0.4
846,885 - MPMX19_04479 0.54 -1.6
847,040 + MPMX19_04479 0.69 +0.4
847,040 + MPMX19_04479 0.69 -0.9
847,040 + MPMX19_04479 0.69 -2.1
847,040 + MPMX19_04479 0.69 +0.8
847,040 + MPMX19_04479 0.69 -0.7
847,040 + MPMX19_04479 0.69 -1.2
847,041 - MPMX19_04479 0.69 -0.6
847,041 - MPMX19_04479 0.69 -0.5
847,041 - MPMX19_04479 0.69 -1.6
847,041 - MPMX19_04479 0.69 -0.6
847,041 - MPMX19_04479 0.69 -1.0
847,041 - MPMX19_04479 0.69 -1.4
847,041 - MPMX19_04479 0.69 +0.4
847,041 - MPMX19_04479 0.69 -0.9
847,076 + MPMX19_04479 0.72 -0.2
847,076 + MPMX19_04479 0.72 -2.1
847,076 + MPMX19_04479 0.72 -1.8
847,076 + MPMX19_04479 0.72 -0.2
847,076 + MPMX19_04479 0.72 -1.9
847,076 + MPMX19_04479 0.72 +0.4
847,077 - MPMX19_04479 0.72 -0.2
847,077 - MPMX19_04479 0.72 +0.2
847,077 - MPMX19_04479 0.72 -0.2
847,077 - MPMX19_04479 0.72 +0.7
847,077 - MPMX19_04479 0.72 -2.1
847,077 - MPMX19_04479 0.72 -0.6
847,077 - MPMX19_04479 0.72 -2.1
847,078 + MPMX19_04479 0.72 -0.2
847,078 + MPMX19_04479 0.72 -0.0
847,078 + MPMX19_04479 0.72 -1.6
847,078 + MPMX19_04479 0.72 +1.8
847,079 - MPMX19_04479 0.72 -0.9
847,079 - MPMX19_04479 0.72 +0.1
847,079 - MPMX19_04479 0.72 -1.2
847,079 - MPMX19_04479 0.72 -0.2
847,079 - MPMX19_04479 0.72 +0.4
847,079 - MPMX19_04479 0.72 -0.9
847,133 + MPMX19_04479 0.77 -0.5
847,133 + MPMX19_04479 0.77 -0.9
847,133 + MPMX19_04479 0.77 +0.1
847,134 - MPMX19_04479 0.77 -1.2
847,134 - MPMX19_04479 0.77 +0.4
847,134 - MPMX19_04479 0.77 -1.5
847,134 - MPMX19_04479 0.77 -0.6

Or see this region's nucleotide sequence