Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04450

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04448 and MPMX19_04449 are separated by 152 nucleotidesMPMX19_04449 and MPMX19_04450 are separated by 86 nucleotidesMPMX19_04450 and MPMX19_04451 are separated by 226 nucleotides MPMX19_04448: MPMX19_04448 - NAD(P) transhydrogenase subunit alpha part 1, at 815,092 to 816,261 _04448 MPMX19_04449: MPMX19_04449 - Inosine-5'-monophosphate dehydrogenase, at 816,414 to 816,923 _04449 MPMX19_04450: MPMX19_04450 - hypothetical protein, at 817,010 to 818,038 _04450 MPMX19_04451: MPMX19_04451 - hypothetical protein, at 818,265 to 819,008 _04451 Position (kb) 817 818 819Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 816.113 kb on + strand, within MPMX19_04448at 816.113 kb on + strand, within MPMX19_04448at 816.113 kb on + strand, within MPMX19_04448at 816.301 kb on - strandat 816.301 kb on - strandat 816.670 kb on + strand, within MPMX19_04449at 816.670 kb on + strand, within MPMX19_04449at 816.670 kb on + strand, within MPMX19_04449at 816.671 kb on - strand, within MPMX19_04449at 816.671 kb on - strand, within MPMX19_04449at 817.068 kb on + strandat 817.068 kb on + strandat 817.068 kb on + strandat 817.069 kb on - strandat 817.069 kb on - strandat 817.560 kb on + strand, within MPMX19_04450at 817.560 kb on + strand, within MPMX19_04450at 817.560 kb on + strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.605 kb on + strand, within MPMX19_04450at 817.605 kb on + strand, within MPMX19_04450at 817.710 kb on + strand, within MPMX19_04450at 817.711 kb on - strand, within MPMX19_04450at 817.711 kb on - strand, within MPMX19_04450at 817.711 kb on - strand, within MPMX19_04450at 817.711 kb on - strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.717 kb on - strand, within MPMX19_04450at 817.717 kb on - strand, within MPMX19_04450at 817.722 kb on + strand, within MPMX19_04450at 817.722 kb on + strand, within MPMX19_04450at 817.722 kb on + strand, within MPMX19_04450at 817.722 kb on + strand, within MPMX19_04450at 817.723 kb on - strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450at 817.998 kb on + strandat 817.999 kb on - strandat 817.999 kb on - strandat 818.022 kb on + strandat 818.022 kb on + strandat 818.022 kb on + strandat 818.022 kb on + strandat 818.022 kb on + strandat 818.022 kb on + strandat 818.022 kb on + strandat 818.022 kb on + strandat 818.023 kb on - strandat 818.023 kb on - strandat 818.023 kb on - strandat 818.023 kb on - strandat 818.023 kb on - strandat 818.023 kb on - strandat 818.023 kb on - strandat 818.023 kb on - strandat 818.023 kb on - strandat 818.250 kb on + strandat 818.250 kb on + strandat 818.250 kb on + strandat 818.251 kb on - strandat 818.251 kb on - strandat 818.287 kb on + strandat 818.287 kb on + strandat 818.287 kb on + strandat 818.371 kb on + strand, within MPMX19_04451at 818.371 kb on + strand, within MPMX19_04451at 818.371 kb on + strand, within MPMX19_04451at 818.371 kb on + strand, within MPMX19_04451at 818.372 kb on - strand, within MPMX19_04451at 818.570 kb on - strand, within MPMX19_04451at 818.570 kb on - strand, within MPMX19_04451at 818.578 kb on + strand, within MPMX19_04451at 818.578 kb on + strand, within MPMX19_04451at 818.578 kb on + strand, within MPMX19_04451at 818.578 kb on + strand, within MPMX19_04451at 818.578 kb on + strand, within MPMX19_04451at 818.578 kb on + strand, within MPMX19_04451at 818.579 kb on - strand, within MPMX19_04451at 818.579 kb on - strand, within MPMX19_04451at 818.579 kb on - strand, within MPMX19_04451at 818.579 kb on - strand, within MPMX19_04451at 818.579 kb on - strand, within MPMX19_04451at 818.579 kb on - strand, within MPMX19_04451at 818.579 kb on - strand, within MPMX19_04451at 818.654 kb on - strand, within MPMX19_04451at 818.654 kb on - strand, within MPMX19_04451at 818.827 kb on + strand, within MPMX19_04451at 818.828 kb on - strand, within MPMX19_04451at 818.828 kb on - strand, within MPMX19_04451at 818.999 kb on + strandat 818.999 kb on + strandat 818.999 kb on + strandat 818.999 kb on + strandat 818.999 kb on + strandat 818.999 kb on + strandat 818.999 kb on + strandat 819.000 kb on - strandat 819.000 kb on - strandat 819.000 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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816,113 + MPMX19_04448 0.87 -0.6
816,113 + MPMX19_04448 0.87 -0.2
816,113 + MPMX19_04448 0.87 +0.4
816,301 - +0.4
816,301 - +0.1
816,670 + MPMX19_04449 0.50 -0.9
816,670 + MPMX19_04449 0.50 +0.3
816,670 + MPMX19_04449 0.50 +1.4
816,671 - MPMX19_04449 0.50 -1.6
816,671 - MPMX19_04449 0.50 -2.0
817,068 + -3.5
817,068 + -0.7
817,068 + -0.6
817,069 - +0.2
817,069 - -2.3
817,560 + MPMX19_04450 0.53 -1.5
817,560 + MPMX19_04450 0.53 -2.0
817,560 + MPMX19_04450 0.53 -1.2
817,561 - MPMX19_04450 0.54 -0.7
817,561 - MPMX19_04450 0.54 -0.1
817,561 - MPMX19_04450 0.54 -0.6
817,561 - MPMX19_04450 0.54 +0.4
817,561 - MPMX19_04450 0.54 -3.0
817,561 - MPMX19_04450 0.54 -1.9
817,561 - MPMX19_04450 0.54 -0.2
817,561 - MPMX19_04450 0.54 -1.6
817,561 - MPMX19_04450 0.54 +0.8
817,561 - MPMX19_04450 0.54 -0.9
817,605 + MPMX19_04450 0.58 -0.6
817,605 + MPMX19_04450 0.58 -1.2
817,710 + MPMX19_04450 0.68 -0.6
817,711 - MPMX19_04450 0.68 -0.9
817,711 - MPMX19_04450 0.68 -2.3
817,711 - MPMX19_04450 0.68 -1.2
817,711 - MPMX19_04450 0.68 -1.6
817,716 + MPMX19_04450 0.69 +0.4
817,716 + MPMX19_04450 0.69 -2.5
817,716 + MPMX19_04450 0.69 -1.4
817,716 + MPMX19_04450 0.69 -0.6
817,716 + MPMX19_04450 0.69 -0.9
817,716 + MPMX19_04450 0.69 +0.4
817,716 + MPMX19_04450 0.69 -2.4
817,716 + MPMX19_04450 0.69 -1.2
817,716 + MPMX19_04450 0.69 -1.4
817,717 - MPMX19_04450 0.69 -1.6
817,717 - MPMX19_04450 0.69 -0.1
817,722 + MPMX19_04450 0.69 -0.9
817,722 + MPMX19_04450 0.69 +0.8
817,722 + MPMX19_04450 0.69 -1.2
817,722 + MPMX19_04450 0.69 +1.4
817,723 - MPMX19_04450 0.69 -1.2
817,830 + MPMX19_04450 0.80 -1.4
817,830 + MPMX19_04450 0.80 -2.0
817,830 + MPMX19_04450 0.80 -2.7
817,830 + MPMX19_04450 0.80 -1.9
817,830 + MPMX19_04450 0.80 -0.1
817,830 + MPMX19_04450 0.80 +0.7
817,830 + MPMX19_04450 0.80 -1.4
817,831 - MPMX19_04450 0.80 +0.4
817,831 - MPMX19_04450 0.80 -0.9
817,831 - MPMX19_04450 0.80 +0.4
817,831 - MPMX19_04450 0.80 -1.2
817,831 - MPMX19_04450 0.80 +0.2
817,831 - MPMX19_04450 0.80 +0.1
817,831 - MPMX19_04450 0.80 -0.6
817,998 + -0.6
817,999 - -0.4
817,999 - +1.2
818,022 + -0.6
818,022 + -1.7
818,022 + -0.2
818,022 + -0.2
818,022 + -0.4
818,022 + +0.4
818,022 + +0.8
818,022 + -1.5
818,023 - -1.7
818,023 - -0.2
818,023 - -2.4
818,023 - -1.4
818,023 - +0.1
818,023 - -1.4
818,023 - -1.9
818,023 - -2.4
818,023 - -1.0
818,250 + +0.0
818,250 + -0.6
818,250 + +0.4
818,251 - -1.0
818,251 - +0.8
818,287 + +0.6
818,287 + -0.2
818,287 + +0.4
818,371 + MPMX19_04451 0.14 -1.7
818,371 + MPMX19_04451 0.14 -0.7
818,371 + MPMX19_04451 0.14 +0.4
818,371 + MPMX19_04451 0.14 -0.8
818,372 - MPMX19_04451 0.14 -0.2
818,570 - MPMX19_04451 0.41 -0.6
818,570 - MPMX19_04451 0.41 -0.2
818,578 + MPMX19_04451 0.42 -1.6
818,578 + MPMX19_04451 0.42 -0.4
818,578 + MPMX19_04451 0.42 -0.6
818,578 + MPMX19_04451 0.42 -0.9
818,578 + MPMX19_04451 0.42 -0.7
818,578 + MPMX19_04451 0.42 -0.9
818,579 - MPMX19_04451 0.42 -1.9
818,579 - MPMX19_04451 0.42 -0.6
818,579 - MPMX19_04451 0.42 -1.2
818,579 - MPMX19_04451 0.42 +0.2
818,579 - MPMX19_04451 0.42 -0.6
818,579 - MPMX19_04451 0.42 -0.2
818,579 - MPMX19_04451 0.42 -0.9
818,654 - MPMX19_04451 0.52 -1.5
818,654 - MPMX19_04451 0.52 -0.4
818,827 + MPMX19_04451 0.76 +2.0
818,828 - MPMX19_04451 0.76 -0.4
818,828 - MPMX19_04451 0.76 -0.2
818,999 + -0.6
818,999 + -1.2
818,999 + +1.4
818,999 + -1.1
818,999 + -2.2
818,999 + -0.3
818,999 + +0.4
819,000 - -1.0
819,000 - -1.9
819,000 - -1.4

Or see this region's nucleotide sequence