Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04398

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04397 and MPMX19_04398 are separated by 178 nucleotidesMPMX19_04398 and MPMX19_04399 are separated by 101 nucleotidesMPMX19_04399 and MPMX19_04400 are separated by 92 nucleotides MPMX19_04397: MPMX19_04397 - Copper-exporting P-type ATPase, at 761,733 to 764,186 _04397 MPMX19_04398: MPMX19_04398 - hypothetical protein, at 764,365 to 764,925 _04398 MPMX19_04399: MPMX19_04399 - hypothetical protein, at 765,027 to 765,671 _04399 MPMX19_04400: MPMX19_04400 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 765,764 to 767,026 _04400 Position (kb) 764 765Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 763.399 kb on + strand, within MPMX19_04397at 763.399 kb on + strand, within MPMX19_04397at 763.399 kb on + strand, within MPMX19_04397at 763.399 kb on + strand, within MPMX19_04397at 763.400 kb on - strand, within MPMX19_04397at 763.400 kb on - strand, within MPMX19_04397at 763.400 kb on - strand, within MPMX19_04397at 763.400 kb on - strand, within MPMX19_04397at 763.441 kb on + strand, within MPMX19_04397at 763.441 kb on + strand, within MPMX19_04397at 763.441 kb on + strand, within MPMX19_04397at 763.441 kb on + strand, within MPMX19_04397at 763.441 kb on + strand, within MPMX19_04397at 763.441 kb on + strand, within MPMX19_04397at 763.441 kb on + strand, within MPMX19_04397at 763.441 kb on + strand, within MPMX19_04397at 763.441 kb on + strand, within MPMX19_04397at 763.442 kb on - strand, within MPMX19_04397at 763.442 kb on - strand, within MPMX19_04397at 763.442 kb on - strand, within MPMX19_04397at 763.442 kb on - strand, within MPMX19_04397at 763.442 kb on - strand, within MPMX19_04397at 763.534 kb on + strand, within MPMX19_04397at 763.534 kb on + strand, within MPMX19_04397at 763.534 kb on + strand, within MPMX19_04397at 763.535 kb on - strand, within MPMX19_04397at 763.757 kb on - strand, within MPMX19_04397at 763.757 kb on - strand, within MPMX19_04397at 764.053 kb on - strandat 764.223 kb on + strandat 764.452 kb on + strand, within MPMX19_04398at 764.452 kb on + strand, within MPMX19_04398at 764.452 kb on + strand, within MPMX19_04398at 764.452 kb on + strand, within MPMX19_04398at 764.453 kb on - strand, within MPMX19_04398at 764.453 kb on - strand, within MPMX19_04398at 764.558 kb on - strand, within MPMX19_04398at 764.558 kb on - strand, within MPMX19_04398at 764.629 kb on + strand, within MPMX19_04398at 764.629 kb on + strand, within MPMX19_04398at 764.629 kb on + strand, within MPMX19_04398at 764.629 kb on + strand, within MPMX19_04398at 764.629 kb on + strand, within MPMX19_04398at 764.630 kb on - strand, within MPMX19_04398at 764.630 kb on - strand, within MPMX19_04398at 764.630 kb on - strand, within MPMX19_04398at 764.630 kb on - strand, within MPMX19_04398at 764.630 kb on - strand, within MPMX19_04398at 764.630 kb on - strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.779 kb on + strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.780 kb on - strand, within MPMX19_04398at 764.785 kb on + strand, within MPMX19_04398at 764.785 kb on + strand, within MPMX19_04398at 764.785 kb on + strand, within MPMX19_04398at 764.785 kb on + strand, within MPMX19_04398at 764.786 kb on - strand, within MPMX19_04398at 764.786 kb on - strand, within MPMX19_04398at 764.786 kb on - strand, within MPMX19_04398at 764.786 kb on - strand, within MPMX19_04398at 764.786 kb on - strand, within MPMX19_04398at 764.786 kb on - strand, within MPMX19_04398at 764.786 kb on - strand, within MPMX19_04398at 764.833 kb on + strand, within MPMX19_04398at 764.833 kb on + strand, within MPMX19_04398at 764.833 kb on + strand, within MPMX19_04398at 764.833 kb on + strand, within MPMX19_04398at 764.833 kb on + strand, within MPMX19_04398at 764.833 kb on + strand, within MPMX19_04398at 764.833 kb on + strand, within MPMX19_04398at 764.833 kb on + strand, within MPMX19_04398at 764.834 kb on - strand, within MPMX19_04398at 764.834 kb on - strand, within MPMX19_04398at 764.834 kb on - strand, within MPMX19_04398at 764.834 kb on - strand, within MPMX19_04398at 764.923 kb on + strandat 764.986 kb on - strandat 765.255 kb on + strand, within MPMX19_04399at 765.255 kb on + strand, within MPMX19_04399at 765.255 kb on + strand, within MPMX19_04399at 765.255 kb on + strand, within MPMX19_04399at 765.255 kb on + strand, within MPMX19_04399at 765.255 kb on + strand, within MPMX19_04399at 765.255 kb on + strand, within MPMX19_04399at 765.255 kb on + strand, within MPMX19_04399at 765.255 kb on + strand, within MPMX19_04399at 765.255 kb on + strand, within MPMX19_04399at 765.255 kb on + strand, within MPMX19_04399at 765.255 kb on + strand, within MPMX19_04399at 765.255 kb on + strand, within MPMX19_04399at 765.255 kb on + strand, within MPMX19_04399at 765.255 kb on + strand, within MPMX19_04399at 765.255 kb on + strand, within MPMX19_04399at 765.255 kb on + strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.256 kb on - strand, within MPMX19_04399at 765.258 kb on - strand, within MPMX19_04399at 765.510 kb on + strand, within MPMX19_04399at 765.510 kb on + strand, within MPMX19_04399at 765.510 kb on + strand, within MPMX19_04399at 765.510 kb on + strand, within MPMX19_04399at 765.510 kb on + strand, within MPMX19_04399at 765.510 kb on + strand, within MPMX19_04399at 765.510 kb on + strand, within MPMX19_04399at 765.510 kb on + strand, within MPMX19_04399at 765.510 kb on + strand, within MPMX19_04399at 765.511 kb on - strand, within MPMX19_04399at 765.511 kb on - strand, within MPMX19_04399at 765.511 kb on - strand, within MPMX19_04399at 765.511 kb on - strand, within MPMX19_04399at 765.511 kb on - strand, within MPMX19_04399at 765.511 kb on - strand, within MPMX19_04399at 765.511 kb on - strand, within MPMX19_04399at 765.511 kb on - strand, within MPMX19_04399at 765.511 kb on - strand, within MPMX19_04399at 765.511 kb on - strand, within MPMX19_04399at 765.511 kb on - strand, within MPMX19_04399at 765.511 kb on - strand, within MPMX19_04399at 765.511 kb on - strand, within MPMX19_04399at 765.511 kb on - strand, within MPMX19_04399at 765.709 kb on - strandat 765.728 kb on + strandat 765.728 kb on + strandat 765.728 kb on + strandat 765.728 kb on + strandat 765.728 kb on + strandat 765.728 kb on + strandat 765.728 kb on + strandat 765.729 kb on - strandat 765.729 kb on - strandat 765.729 kb on - strandat 765.729 kb on - strandat 765.729 kb on - strandat 765.729 kb on - strandat 765.729 kb on - strandat 765.729 kb on - strandat 765.756 kb on + strandat 765.756 kb on + strandat 765.765 kb on + strandat 765.765 kb on + strandat 765.765 kb on + strandat 765.765 kb on + strandat 765.765 kb on + strandat 765.765 kb on + strandat 765.765 kb on + strandat 765.766 kb on - strandat 765.766 kb on - strandat 765.766 kb on - strandat 765.766 kb on - strandat 765.766 kb on - strandat 765.766 kb on - strandat 765.766 kb on - strandat 765.766 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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763,399 + MPMX19_04397 0.68 -0.5
763,399 + MPMX19_04397 0.68 +1.0
763,399 + MPMX19_04397 0.68 -1.9
763,399 + MPMX19_04397 0.68 -1.4
763,400 - MPMX19_04397 0.68 -1.3
763,400 - MPMX19_04397 0.68 -0.4
763,400 - MPMX19_04397 0.68 -1.8
763,400 - MPMX19_04397 0.68 -0.9
763,441 + MPMX19_04397 0.70 +0.5
763,441 + MPMX19_04397 0.70 -0.4
763,441 + MPMX19_04397 0.70 -3.2
763,441 + MPMX19_04397 0.70 -1.0
763,441 + MPMX19_04397 0.70 -1.0
763,441 + MPMX19_04397 0.70 -0.1
763,441 + MPMX19_04397 0.70 +0.9
763,441 + MPMX19_04397 0.70 -0.4
763,441 + MPMX19_04397 0.70 -1.1
763,442 - MPMX19_04397 0.70 -0.8
763,442 - MPMX19_04397 0.70 -0.5
763,442 - MPMX19_04397 0.70 +0.2
763,442 - MPMX19_04397 0.70 -1.7
763,442 - MPMX19_04397 0.70 -1.1
763,534 + MPMX19_04397 0.73 -0.1
763,534 + MPMX19_04397 0.73 +0.0
763,534 + MPMX19_04397 0.73 -1.1
763,535 - MPMX19_04397 0.73 -0.1
763,757 - MPMX19_04397 0.82 -0.7
763,757 - MPMX19_04397 0.82 +1.5
764,053 - +0.2
764,223 + -0.4
764,452 + MPMX19_04398 0.16 -1.6
764,452 + MPMX19_04398 0.16 -0.7
764,452 + MPMX19_04398 0.16 -0.9
764,452 + MPMX19_04398 0.16 +1.0
764,453 - MPMX19_04398 0.16 -1.4
764,453 - MPMX19_04398 0.16 -0.9
764,558 - MPMX19_04398 0.34 -0.5
764,558 - MPMX19_04398 0.34 -1.7
764,629 + MPMX19_04398 0.47 -0.4
764,629 + MPMX19_04398 0.47 +0.1
764,629 + MPMX19_04398 0.47 -0.1
764,629 + MPMX19_04398 0.47 -1.1
764,629 + MPMX19_04398 0.47 +0.5
764,630 - MPMX19_04398 0.47 +0.5
764,630 - MPMX19_04398 0.47 +0.5
764,630 - MPMX19_04398 0.47 -0.3
764,630 - MPMX19_04398 0.47 -0.9
764,630 - MPMX19_04398 0.47 -0.5
764,630 - MPMX19_04398 0.47 -0.9
764,779 + MPMX19_04398 0.74 -0.9
764,779 + MPMX19_04398 0.74 -2.4
764,779 + MPMX19_04398 0.74 -0.9
764,779 + MPMX19_04398 0.74 -0.5
764,779 + MPMX19_04398 0.74 -1.9
764,779 + MPMX19_04398 0.74 -0.1
764,779 + MPMX19_04398 0.74 -2.4
764,779 + MPMX19_04398 0.74 +0.0
764,779 + MPMX19_04398 0.74 -2.4
764,779 + MPMX19_04398 0.74 -0.1
764,779 + MPMX19_04398 0.74 -1.1
764,779 + MPMX19_04398 0.74 -0.1
764,779 + MPMX19_04398 0.74 -0.0
764,779 + MPMX19_04398 0.74 +0.5
764,779 + MPMX19_04398 0.74 -0.1
764,779 + MPMX19_04398 0.74 -0.8
764,779 + MPMX19_04398 0.74 -1.7
764,779 + MPMX19_04398 0.74 -0.5
764,779 + MPMX19_04398 0.74 -2.0
764,779 + MPMX19_04398 0.74 +0.4
764,779 + MPMX19_04398 0.74 -1.1
764,779 + MPMX19_04398 0.74 -0.9
764,779 + MPMX19_04398 0.74 -1.2
764,779 + MPMX19_04398 0.74 -2.0
764,779 + MPMX19_04398 0.74 -0.5
764,779 + MPMX19_04398 0.74 -0.9
764,779 + MPMX19_04398 0.74 -2.1
764,779 + MPMX19_04398 0.74 +2.0
764,779 + MPMX19_04398 0.74 -0.1
764,779 + MPMX19_04398 0.74 +2.5
764,779 + MPMX19_04398 0.74 -0.3
764,779 + MPMX19_04398 0.74 -1.5
764,780 - MPMX19_04398 0.74 -0.9
764,780 - MPMX19_04398 0.74 -0.9
764,780 - MPMX19_04398 0.74 -1.7
764,780 - MPMX19_04398 0.74 -2.5
764,780 - MPMX19_04398 0.74 -0.9
764,780 - MPMX19_04398 0.74 -0.9
764,780 - MPMX19_04398 0.74 -0.5
764,780 - MPMX19_04398 0.74 -0.9
764,780 - MPMX19_04398 0.74 -2.0
764,780 - MPMX19_04398 0.74 -0.7
764,780 - MPMX19_04398 0.74 +0.9
764,780 - MPMX19_04398 0.74 -1.4
764,780 - MPMX19_04398 0.74 -1.9
764,780 - MPMX19_04398 0.74 -0.2
764,780 - MPMX19_04398 0.74 +0.1
764,780 - MPMX19_04398 0.74 +1.0
764,780 - MPMX19_04398 0.74 +1.0
764,780 - MPMX19_04398 0.74 -0.1
764,780 - MPMX19_04398 0.74 +0.5
764,780 - MPMX19_04398 0.74 -1.1
764,780 - MPMX19_04398 0.74 -0.7
764,780 - MPMX19_04398 0.74 -0.4
764,785 + MPMX19_04398 0.75 -0.5
764,785 + MPMX19_04398 0.75 -1.1
764,785 + MPMX19_04398 0.75 +0.5
764,785 + MPMX19_04398 0.75 -2.4
764,786 - MPMX19_04398 0.75 -1.1
764,786 - MPMX19_04398 0.75 -0.8
764,786 - MPMX19_04398 0.75 +2.0
764,786 - MPMX19_04398 0.75 -0.1
764,786 - MPMX19_04398 0.75 -0.5
764,786 - MPMX19_04398 0.75 +0.8
764,786 - MPMX19_04398 0.75 -0.8
764,833 + MPMX19_04398 0.83 -1.3
764,833 + MPMX19_04398 0.83 -1.7
764,833 + MPMX19_04398 0.83 -1.1
764,833 + MPMX19_04398 0.83 +0.1
764,833 + MPMX19_04398 0.83 +1.5
764,833 + MPMX19_04398 0.83 -0.1
764,833 + MPMX19_04398 0.83 +0.1
764,833 + MPMX19_04398 0.83 -1.7
764,834 - MPMX19_04398 0.84 -1.5
764,834 - MPMX19_04398 0.84 +0.5
764,834 - MPMX19_04398 0.84 -1.8
764,834 - MPMX19_04398 0.84 -2.4
764,923 + -1.1
764,986 - +0.5
765,255 + MPMX19_04399 0.35 -1.7
765,255 + MPMX19_04399 0.35 +0.6
765,255 + MPMX19_04399 0.35 -1.3
765,255 + MPMX19_04399 0.35 +1.0
765,255 + MPMX19_04399 0.35 +0.1
765,255 + MPMX19_04399 0.35 +0.5
765,255 + MPMX19_04399 0.35 -1.7
765,255 + MPMX19_04399 0.35 -0.4
765,255 + MPMX19_04399 0.35 -0.1
765,255 + MPMX19_04399 0.35 -0.1
765,255 + MPMX19_04399 0.35 -1.5
765,255 + MPMX19_04399 0.35 +2.5
765,255 + MPMX19_04399 0.35 -0.4
765,255 + MPMX19_04399 0.35 -1.1
765,255 + MPMX19_04399 0.35 -0.5
765,255 + MPMX19_04399 0.35 -1.2
765,255 + MPMX19_04399 0.35 -1.4
765,256 - MPMX19_04399 0.36 -0.4
765,256 - MPMX19_04399 0.36 -2.0
765,256 - MPMX19_04399 0.36 -0.9
765,256 - MPMX19_04399 0.36 -1.1
765,256 - MPMX19_04399 0.36 +1.9
765,256 - MPMX19_04399 0.36 -0.3
765,256 - MPMX19_04399 0.36 +0.0
765,256 - MPMX19_04399 0.36 -0.1
765,256 - MPMX19_04399 0.36 -0.1
765,256 - MPMX19_04399 0.36 -0.2
765,256 - MPMX19_04399 0.36 -3.2
765,256 - MPMX19_04399 0.36 -0.3
765,256 - MPMX19_04399 0.36 -0.1
765,256 - MPMX19_04399 0.36 -0.1
765,256 - MPMX19_04399 0.36 +0.7
765,256 - MPMX19_04399 0.36 -1.5
765,256 - MPMX19_04399 0.36 +0.5
765,256 - MPMX19_04399 0.36 +0.7
765,256 - MPMX19_04399 0.36 -0.7
765,256 - MPMX19_04399 0.36 +0.1
765,256 - MPMX19_04399 0.36 -1.7
765,256 - MPMX19_04399 0.36 -0.5
765,256 - MPMX19_04399 0.36 -1.4
765,258 - MPMX19_04399 0.36 +1.5
765,510 + MPMX19_04399 0.75 -0.1
765,510 + MPMX19_04399 0.75 +0.5
765,510 + MPMX19_04399 0.75 -0.1
765,510 + MPMX19_04399 0.75 -1.0
765,510 + MPMX19_04399 0.75 +0.1
765,510 + MPMX19_04399 0.75 -0.5
765,510 + MPMX19_04399 0.75 +0.5
765,510 + MPMX19_04399 0.75 -0.5
765,510 + MPMX19_04399 0.75 -0.5
765,511 - MPMX19_04399 0.75 -0.9
765,511 - MPMX19_04399 0.75 -1.1
765,511 - MPMX19_04399 0.75 -1.4
765,511 - MPMX19_04399 0.75 -0.1
765,511 - MPMX19_04399 0.75 -0.0
765,511 - MPMX19_04399 0.75 -1.9
765,511 - MPMX19_04399 0.75 -0.1
765,511 - MPMX19_04399 0.75 -0.1
765,511 - MPMX19_04399 0.75 -1.5
765,511 - MPMX19_04399 0.75 -0.5
765,511 - MPMX19_04399 0.75 -0.5
765,511 - MPMX19_04399 0.75 +0.5
765,511 - MPMX19_04399 0.75 +0.6
765,511 - MPMX19_04399 0.75 +0.2
765,709 - -1.2
765,728 + -1.8
765,728 + -0.2
765,728 + -2.2
765,728 + -0.4
765,728 + -2.4
765,728 + -0.5
765,728 + -1.1
765,729 - -0.1
765,729 - -0.5
765,729 - +1.5
765,729 - +1.5
765,729 - -2.5
765,729 - +0.3
765,729 - -1.5
765,729 - -0.5
765,756 + -0.7
765,756 + -2.2
765,765 + -0.9
765,765 + -1.5
765,765 + -0.7
765,765 + -1.5
765,765 + +1.5
765,765 + -1.9
765,765 + -1.5
765,766 - +1.0
765,766 - +0.1
765,766 - -0.5
765,766 - -1.0
765,766 - -1.4
765,766 - -0.9
765,766 - -0.5
765,766 - +0.1

Or see this region's nucleotide sequence