Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04263 and MPMX19_04264 are separated by 18 nucleotides MPMX19_04264 and MPMX19_04265 are separated by 34 nucleotides MPMX19_04265 and MPMX19_04266 are separated by 145 nucleotides
MPMX19_04263: MPMX19_04263 - hypothetical protein, at 623,341 to 624,348
_04263
MPMX19_04264: MPMX19_04264 - hypothetical protein, at 624,367 to 625,119
_04264
MPMX19_04265: MPMX19_04265 - Aliphatic sulfonates import ATP-binding protein SsuB, at 625,154 to 625,831
_04265
MPMX19_04266: MPMX19_04266 - hypothetical protein, at 625,977 to 626,387
_04266
Position (kb)
624
625
626 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 623.678 kb on - strand, within MPMX19_04263 at 623.678 kb on - strand, within MPMX19_04263 at 623.920 kb on + strand, within MPMX19_04263 at 623.920 kb on + strand, within MPMX19_04263 at 623.920 kb on + strand, within MPMX19_04263 at 623.920 kb on + strand, within MPMX19_04263 at 623.920 kb on + strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 624.028 kb on + strand, within MPMX19_04263 at 624.028 kb on + strand, within MPMX19_04263 at 624.028 kb on + strand, within MPMX19_04263 at 624.028 kb on + strand, within MPMX19_04263 at 624.028 kb on + strand, within MPMX19_04263 at 624.029 kb on - strand, within MPMX19_04263 at 624.259 kb on + strand at 624.259 kb on + strand at 624.260 kb on - strand at 624.260 kb on - strand at 624.685 kb on + strand, within MPMX19_04264 at 624.685 kb on + strand, within MPMX19_04264 at 624.685 kb on + strand, within MPMX19_04264 at 624.685 kb on + strand, within MPMX19_04264 at 624.685 kb on + strand, within MPMX19_04264 at 624.685 kb on + strand, within MPMX19_04264 at 624.685 kb on + strand, within MPMX19_04264 at 624.685 kb on + strand, within MPMX19_04264 at 624.685 kb on + strand, within MPMX19_04264 at 624.685 kb on + strand, within MPMX19_04264 at 624.685 kb on + strand, within MPMX19_04264 at 624.685 kb on + strand, within MPMX19_04264 at 624.685 kb on + strand, within MPMX19_04264 at 624.685 kb on + strand, within MPMX19_04264 at 624.685 kb on + strand, within MPMX19_04264 at 624.685 kb on + strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 624.686 kb on - strand, within MPMX19_04264 at 625.015 kb on + strand, within MPMX19_04264 at 625.015 kb on + strand, within MPMX19_04264 at 625.015 kb on + strand, within MPMX19_04264 at 625.015 kb on + strand, within MPMX19_04264 at 625.015 kb on + strand, within MPMX19_04264 at 625.015 kb on + strand, within MPMX19_04264 at 625.015 kb on + strand, within MPMX19_04264 at 625.015 kb on + strand, within MPMX19_04264 at 625.015 kb on + strand, within MPMX19_04264 at 625.015 kb on + strand, within MPMX19_04264 at 625.015 kb on + strand, within MPMX19_04264 at 625.015 kb on + strand, within MPMX19_04264 at 625.015 kb on + strand, within MPMX19_04264 at 625.015 kb on + strand, within MPMX19_04264 at 625.016 kb on - strand, within MPMX19_04264 at 625.016 kb on - strand, within MPMX19_04264 at 625.016 kb on - strand, within MPMX19_04264 at 625.016 kb on - strand, within MPMX19_04264 at 625.016 kb on - strand, within MPMX19_04264 at 625.016 kb on - strand, within MPMX19_04264 at 625.016 kb on - strand, within MPMX19_04264 at 625.016 kb on - strand, within MPMX19_04264 at 625.016 kb on - strand, within MPMX19_04264 at 625.016 kb on - strand, within MPMX19_04264 at 625.016 kb on - strand, within MPMX19_04264 at 625.016 kb on - strand, within MPMX19_04264 at 625.016 kb on - strand, within MPMX19_04264 at 625.016 kb on - strand, within MPMX19_04264 at 625.054 kb on + strand at 625.322 kb on + strand, within MPMX19_04265 at 625.323 kb on - strand, within MPMX19_04265 at 625.323 kb on - strand, within MPMX19_04265 at 625.323 kb on - strand, within MPMX19_04265 at 625.323 kb on - strand, within MPMX19_04265
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 623,678 - MPMX19_04263 0.33 -0.0 623,678 - MPMX19_04263 0.33 +0.5 623,920 + MPMX19_04263 0.57 +0.1 623,920 + MPMX19_04263 0.57 +0.9 623,920 + MPMX19_04263 0.57 -1.0 623,920 + MPMX19_04263 0.57 -1.2 623,920 + MPMX19_04263 0.57 -0.9 623,921 - MPMX19_04263 0.58 -0.5 623,921 - MPMX19_04263 0.58 -1.7 623,921 - MPMX19_04263 0.58 -0.1 623,921 - MPMX19_04263 0.58 +1.0 623,921 - MPMX19_04263 0.58 -3.4 623,921 - MPMX19_04263 0.58 +0.0 623,921 - MPMX19_04263 0.58 -1.4 623,921 - MPMX19_04263 0.58 +1.5 623,921 - MPMX19_04263 0.58 -0.5 623,921 - MPMX19_04263 0.58 +0.5 623,921 - MPMX19_04263 0.58 -0.3 623,921 - MPMX19_04263 0.58 -1.3 623,921 - MPMX19_04263 0.58 -1.4 624,028 + MPMX19_04263 0.68 -0.7 624,028 + MPMX19_04263 0.68 -1.1 624,028 + MPMX19_04263 0.68 +2.0 624,028 + MPMX19_04263 0.68 -0.9 624,028 + MPMX19_04263 0.68 -1.7 624,029 - MPMX19_04263 0.68 +1.0 624,259 + +0.9 624,259 + -0.5 624,260 - +1.5 624,260 - -1.7 624,685 + MPMX19_04264 0.42 -1.1 624,685 + MPMX19_04264 0.42 +0.5 624,685 + MPMX19_04264 0.42 -1.5 624,685 + MPMX19_04264 0.42 -0.1 624,685 + MPMX19_04264 0.42 +0.5 624,685 + MPMX19_04264 0.42 -1.5 624,685 + MPMX19_04264 0.42 -0.9 624,685 + MPMX19_04264 0.42 -2.4 624,685 + MPMX19_04264 0.42 -0.5 624,685 + MPMX19_04264 0.42 -0.5 624,685 + MPMX19_04264 0.42 -1.5 624,685 + MPMX19_04264 0.42 -1.9 624,685 + MPMX19_04264 0.42 -0.7 624,685 + MPMX19_04264 0.42 +0.5 624,685 + MPMX19_04264 0.42 -1.1 624,685 + MPMX19_04264 0.42 -0.9 624,686 - MPMX19_04264 0.42 -1.6 624,686 - MPMX19_04264 0.42 +0.6 624,686 - MPMX19_04264 0.42 +0.9 624,686 - MPMX19_04264 0.42 -1.5 624,686 - MPMX19_04264 0.42 -0.7 624,686 - MPMX19_04264 0.42 -1.3 624,686 - MPMX19_04264 0.42 -1.9 624,686 - MPMX19_04264 0.42 -1.0 624,686 - MPMX19_04264 0.42 +0.5 624,686 - MPMX19_04264 0.42 -1.3 624,686 - MPMX19_04264 0.42 -0.9 624,686 - MPMX19_04264 0.42 -1.3 624,686 - MPMX19_04264 0.42 -0.1 624,686 - MPMX19_04264 0.42 -0.1 624,686 - MPMX19_04264 0.42 -1.9 624,686 - MPMX19_04264 0.42 -1.2 624,686 - MPMX19_04264 0.42 -0.4 624,686 - MPMX19_04264 0.42 -0.5 624,686 - MPMX19_04264 0.42 -2.0 624,686 - MPMX19_04264 0.42 -0.9 624,686 - MPMX19_04264 0.42 -1.1 624,686 - MPMX19_04264 0.42 -0.4 624,686 - MPMX19_04264 0.42 -0.3 624,686 - MPMX19_04264 0.42 +1.1 624,686 - MPMX19_04264 0.42 -1.1 624,686 - MPMX19_04264 0.42 -0.4 624,686 - MPMX19_04264 0.42 -0.5 624,686 - MPMX19_04264 0.42 -1.9 624,686 - MPMX19_04264 0.42 -1.2 624,686 - MPMX19_04264 0.42 -1.5 624,686 - MPMX19_04264 0.42 -0.3 625,015 + MPMX19_04264 0.86 -0.5 625,015 + MPMX19_04264 0.86 +1.5 625,015 + MPMX19_04264 0.86 -1.2 625,015 + MPMX19_04264 0.86 -2.5 625,015 + MPMX19_04264 0.86 -0.4 625,015 + MPMX19_04264 0.86 -0.9 625,015 + MPMX19_04264 0.86 +1.0 625,015 + MPMX19_04264 0.86 -2.1 625,015 + MPMX19_04264 0.86 -1.4 625,015 + MPMX19_04264 0.86 +0.9 625,015 + MPMX19_04264 0.86 -1.8 625,015 + MPMX19_04264 0.86 +0.1 625,015 + MPMX19_04264 0.86 +0.5 625,015 + MPMX19_04264 0.86 +0.0 625,016 - MPMX19_04264 0.86 -1.1 625,016 - MPMX19_04264 0.86 -1.3 625,016 - MPMX19_04264 0.86 -1.5 625,016 - MPMX19_04264 0.86 -1.1 625,016 - MPMX19_04264 0.86 -1.5 625,016 - MPMX19_04264 0.86 +0.6 625,016 - MPMX19_04264 0.86 -0.1 625,016 - MPMX19_04264 0.86 -1.1 625,016 - MPMX19_04264 0.86 -1.5 625,016 - MPMX19_04264 0.86 -0.9 625,016 - MPMX19_04264 0.86 +0.3 625,016 - MPMX19_04264 0.86 -0.9 625,016 - MPMX19_04264 0.86 +0.5 625,016 - MPMX19_04264 0.86 -1.7 625,054 + -0.5 625,322 + MPMX19_04265 0.25 -0.9 625,323 - MPMX19_04265 0.25 -0.6 625,323 - MPMX19_04265 0.25 +0.5 625,323 - MPMX19_04265 0.25 +0.0 625,323 - MPMX19_04265 0.25 -0.9
Or see this region's nucleotide sequence