Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04264

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04263 and MPMX19_04264 are separated by 18 nucleotidesMPMX19_04264 and MPMX19_04265 are separated by 34 nucleotidesMPMX19_04265 and MPMX19_04266 are separated by 145 nucleotides MPMX19_04263: MPMX19_04263 - hypothetical protein, at 623,341 to 624,348 _04263 MPMX19_04264: MPMX19_04264 - hypothetical protein, at 624,367 to 625,119 _04264 MPMX19_04265: MPMX19_04265 - Aliphatic sulfonates import ATP-binding protein SsuB, at 625,154 to 625,831 _04265 MPMX19_04266: MPMX19_04266 - hypothetical protein, at 625,977 to 626,387 _04266 Position (kb) 624 625 626Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 623.678 kb on - strand, within MPMX19_04263at 623.678 kb on - strand, within MPMX19_04263at 623.920 kb on + strand, within MPMX19_04263at 623.920 kb on + strand, within MPMX19_04263at 623.920 kb on + strand, within MPMX19_04263at 623.920 kb on + strand, within MPMX19_04263at 623.920 kb on + strand, within MPMX19_04263at 623.921 kb on - strand, within MPMX19_04263at 623.921 kb on - strand, within MPMX19_04263at 623.921 kb on - strand, within MPMX19_04263at 623.921 kb on - strand, within MPMX19_04263at 623.921 kb on - strand, within MPMX19_04263at 623.921 kb on - strand, within MPMX19_04263at 623.921 kb on - strand, within MPMX19_04263at 623.921 kb on - strand, within MPMX19_04263at 623.921 kb on - strand, within MPMX19_04263at 623.921 kb on - strand, within MPMX19_04263at 623.921 kb on - strand, within MPMX19_04263at 623.921 kb on - strand, within MPMX19_04263at 623.921 kb on - strand, within MPMX19_04263at 624.028 kb on + strand, within MPMX19_04263at 624.028 kb on + strand, within MPMX19_04263at 624.028 kb on + strand, within MPMX19_04263at 624.028 kb on + strand, within MPMX19_04263at 624.028 kb on + strand, within MPMX19_04263at 624.029 kb on - strand, within MPMX19_04263at 624.259 kb on + strandat 624.259 kb on + strandat 624.260 kb on - strandat 624.260 kb on - strandat 624.685 kb on + strand, within MPMX19_04264at 624.685 kb on + strand, within MPMX19_04264at 624.685 kb on + strand, within MPMX19_04264at 624.685 kb on + strand, within MPMX19_04264at 624.685 kb on + strand, within MPMX19_04264at 624.685 kb on + strand, within MPMX19_04264at 624.685 kb on + strand, within MPMX19_04264at 624.685 kb on + strand, within MPMX19_04264at 624.685 kb on + strand, within MPMX19_04264at 624.685 kb on + strand, within MPMX19_04264at 624.685 kb on + strand, within MPMX19_04264at 624.685 kb on + strand, within MPMX19_04264at 624.685 kb on + strand, within MPMX19_04264at 624.685 kb on + strand, within MPMX19_04264at 624.685 kb on + strand, within MPMX19_04264at 624.685 kb on + strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 624.686 kb on - strand, within MPMX19_04264at 625.015 kb on + strand, within MPMX19_04264at 625.015 kb on + strand, within MPMX19_04264at 625.015 kb on + strand, within MPMX19_04264at 625.015 kb on + strand, within MPMX19_04264at 625.015 kb on + strand, within MPMX19_04264at 625.015 kb on + strand, within MPMX19_04264at 625.015 kb on + strand, within MPMX19_04264at 625.015 kb on + strand, within MPMX19_04264at 625.015 kb on + strand, within MPMX19_04264at 625.015 kb on + strand, within MPMX19_04264at 625.015 kb on + strand, within MPMX19_04264at 625.015 kb on + strand, within MPMX19_04264at 625.015 kb on + strand, within MPMX19_04264at 625.015 kb on + strand, within MPMX19_04264at 625.016 kb on - strand, within MPMX19_04264at 625.016 kb on - strand, within MPMX19_04264at 625.016 kb on - strand, within MPMX19_04264at 625.016 kb on - strand, within MPMX19_04264at 625.016 kb on - strand, within MPMX19_04264at 625.016 kb on - strand, within MPMX19_04264at 625.016 kb on - strand, within MPMX19_04264at 625.016 kb on - strand, within MPMX19_04264at 625.016 kb on - strand, within MPMX19_04264at 625.016 kb on - strand, within MPMX19_04264at 625.016 kb on - strand, within MPMX19_04264at 625.016 kb on - strand, within MPMX19_04264at 625.016 kb on - strand, within MPMX19_04264at 625.016 kb on - strand, within MPMX19_04264at 625.054 kb on + strandat 625.322 kb on + strand, within MPMX19_04265at 625.323 kb on - strand, within MPMX19_04265at 625.323 kb on - strand, within MPMX19_04265at 625.323 kb on - strand, within MPMX19_04265at 625.323 kb on - strand, within MPMX19_04265

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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623,678 - MPMX19_04263 0.33 -0.0
623,678 - MPMX19_04263 0.33 +0.5
623,920 + MPMX19_04263 0.57 +0.1
623,920 + MPMX19_04263 0.57 +0.9
623,920 + MPMX19_04263 0.57 -1.0
623,920 + MPMX19_04263 0.57 -1.2
623,920 + MPMX19_04263 0.57 -0.9
623,921 - MPMX19_04263 0.58 -0.5
623,921 - MPMX19_04263 0.58 -1.7
623,921 - MPMX19_04263 0.58 -0.1
623,921 - MPMX19_04263 0.58 +1.0
623,921 - MPMX19_04263 0.58 -3.4
623,921 - MPMX19_04263 0.58 +0.0
623,921 - MPMX19_04263 0.58 -1.4
623,921 - MPMX19_04263 0.58 +1.5
623,921 - MPMX19_04263 0.58 -0.5
623,921 - MPMX19_04263 0.58 +0.5
623,921 - MPMX19_04263 0.58 -0.3
623,921 - MPMX19_04263 0.58 -1.3
623,921 - MPMX19_04263 0.58 -1.4
624,028 + MPMX19_04263 0.68 -0.7
624,028 + MPMX19_04263 0.68 -1.1
624,028 + MPMX19_04263 0.68 +2.0
624,028 + MPMX19_04263 0.68 -0.9
624,028 + MPMX19_04263 0.68 -1.7
624,029 - MPMX19_04263 0.68 +1.0
624,259 + +0.9
624,259 + -0.5
624,260 - +1.5
624,260 - -1.7
624,685 + MPMX19_04264 0.42 -1.1
624,685 + MPMX19_04264 0.42 +0.5
624,685 + MPMX19_04264 0.42 -1.5
624,685 + MPMX19_04264 0.42 -0.1
624,685 + MPMX19_04264 0.42 +0.5
624,685 + MPMX19_04264 0.42 -1.5
624,685 + MPMX19_04264 0.42 -0.9
624,685 + MPMX19_04264 0.42 -2.4
624,685 + MPMX19_04264 0.42 -0.5
624,685 + MPMX19_04264 0.42 -0.5
624,685 + MPMX19_04264 0.42 -1.5
624,685 + MPMX19_04264 0.42 -1.9
624,685 + MPMX19_04264 0.42 -0.7
624,685 + MPMX19_04264 0.42 +0.5
624,685 + MPMX19_04264 0.42 -1.1
624,685 + MPMX19_04264 0.42 -0.9
624,686 - MPMX19_04264 0.42 -1.6
624,686 - MPMX19_04264 0.42 +0.6
624,686 - MPMX19_04264 0.42 +0.9
624,686 - MPMX19_04264 0.42 -1.5
624,686 - MPMX19_04264 0.42 -0.7
624,686 - MPMX19_04264 0.42 -1.3
624,686 - MPMX19_04264 0.42 -1.9
624,686 - MPMX19_04264 0.42 -1.0
624,686 - MPMX19_04264 0.42 +0.5
624,686 - MPMX19_04264 0.42 -1.3
624,686 - MPMX19_04264 0.42 -0.9
624,686 - MPMX19_04264 0.42 -1.3
624,686 - MPMX19_04264 0.42 -0.1
624,686 - MPMX19_04264 0.42 -0.1
624,686 - MPMX19_04264 0.42 -1.9
624,686 - MPMX19_04264 0.42 -1.2
624,686 - MPMX19_04264 0.42 -0.4
624,686 - MPMX19_04264 0.42 -0.5
624,686 - MPMX19_04264 0.42 -2.0
624,686 - MPMX19_04264 0.42 -0.9
624,686 - MPMX19_04264 0.42 -1.1
624,686 - MPMX19_04264 0.42 -0.4
624,686 - MPMX19_04264 0.42 -0.3
624,686 - MPMX19_04264 0.42 +1.1
624,686 - MPMX19_04264 0.42 -1.1
624,686 - MPMX19_04264 0.42 -0.4
624,686 - MPMX19_04264 0.42 -0.5
624,686 - MPMX19_04264 0.42 -1.9
624,686 - MPMX19_04264 0.42 -1.2
624,686 - MPMX19_04264 0.42 -1.5
624,686 - MPMX19_04264 0.42 -0.3
625,015 + MPMX19_04264 0.86 -0.5
625,015 + MPMX19_04264 0.86 +1.5
625,015 + MPMX19_04264 0.86 -1.2
625,015 + MPMX19_04264 0.86 -2.5
625,015 + MPMX19_04264 0.86 -0.4
625,015 + MPMX19_04264 0.86 -0.9
625,015 + MPMX19_04264 0.86 +1.0
625,015 + MPMX19_04264 0.86 -2.1
625,015 + MPMX19_04264 0.86 -1.4
625,015 + MPMX19_04264 0.86 +0.9
625,015 + MPMX19_04264 0.86 -1.8
625,015 + MPMX19_04264 0.86 +0.1
625,015 + MPMX19_04264 0.86 +0.5
625,015 + MPMX19_04264 0.86 +0.0
625,016 - MPMX19_04264 0.86 -1.1
625,016 - MPMX19_04264 0.86 -1.3
625,016 - MPMX19_04264 0.86 -1.5
625,016 - MPMX19_04264 0.86 -1.1
625,016 - MPMX19_04264 0.86 -1.5
625,016 - MPMX19_04264 0.86 +0.6
625,016 - MPMX19_04264 0.86 -0.1
625,016 - MPMX19_04264 0.86 -1.1
625,016 - MPMX19_04264 0.86 -1.5
625,016 - MPMX19_04264 0.86 -0.9
625,016 - MPMX19_04264 0.86 +0.3
625,016 - MPMX19_04264 0.86 -0.9
625,016 - MPMX19_04264 0.86 +0.5
625,016 - MPMX19_04264 0.86 -1.7
625,054 + -0.5
625,322 + MPMX19_04265 0.25 -0.9
625,323 - MPMX19_04265 0.25 -0.6
625,323 - MPMX19_04265 0.25 +0.5
625,323 - MPMX19_04265 0.25 +0.0
625,323 - MPMX19_04265 0.25 -0.9

Or see this region's nucleotide sequence