Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04233 and MPMX19_04234 are separated by 187 nucleotides MPMX19_04234 and MPMX19_04235 are separated by 271 nucleotides
MPMX19_04233: MPMX19_04233 - hypothetical protein, at 580,306 to 581,532
_04233
MPMX19_04234: MPMX19_04234 - Disulfide-bond oxidoreductase YfcG, at 581,720 to 582,427
_04234
MPMX19_04235: MPMX19_04235 - Acryloyl-CoA reductase (NADH), at 582,699 to 583,850
_04235
Position (kb) 581
582
583 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 580.811 kb on + strand, within MPMX19_04233 at 580.811 kb on + strand, within MPMX19_04233 at 580.811 kb on + strand, within MPMX19_04233 at 580.812 kb on - strand, within MPMX19_04233 at 580.812 kb on - strand, within MPMX19_04233 at 580.812 kb on - strand, within MPMX19_04233 at 580.812 kb on - strand, within MPMX19_04233 at 581.160 kb on + strand, within MPMX19_04233 at 581.160 kb on + strand, within MPMX19_04233 at 581.160 kb on + strand, within MPMX19_04233 at 581.160 kb on + strand, within MPMX19_04233 at 581.160 kb on + strand, within MPMX19_04233 at 581.160 kb on + strand, within MPMX19_04233 at 581.161 kb on - strand, within MPMX19_04233 at 581.161 kb on - strand, within MPMX19_04233 at 581.161 kb on - strand, within MPMX19_04233 at 581.161 kb on - strand, within MPMX19_04233 at 581.161 kb on - strand, within MPMX19_04233 at 581.161 kb on - strand, within MPMX19_04233 at 581.161 kb on - strand, within MPMX19_04233 at 581.161 kb on - strand, within MPMX19_04233 at 581.161 kb on - strand, within MPMX19_04233 at 581.162 kb on + strand, within MPMX19_04233 at 581.162 kb on + strand, within MPMX19_04233 at 581.162 kb on + strand, within MPMX19_04233 at 581.162 kb on + strand, within MPMX19_04233 at 581.162 kb on + strand, within MPMX19_04233 at 581.162 kb on + strand, within MPMX19_04233 at 581.162 kb on + strand, within MPMX19_04233 at 581.163 kb on - strand, within MPMX19_04233 at 581.163 kb on - strand, within MPMX19_04233 at 581.163 kb on - strand, within MPMX19_04233 at 581.163 kb on - strand, within MPMX19_04233 at 581.163 kb on - strand, within MPMX19_04233 at 581.163 kb on - strand, within MPMX19_04233 at 581.163 kb on - strand, within MPMX19_04233 at 581.163 kb on - strand, within MPMX19_04233 at 581.163 kb on - strand, within MPMX19_04233 at 581.184 kb on - strand, within MPMX19_04233 at 581.184 kb on - strand, within MPMX19_04233 at 581.184 kb on - strand, within MPMX19_04233 at 581.184 kb on - strand, within MPMX19_04233 at 581.455 kb on + strand at 581.455 kb on + strand at 581.455 kb on + strand at 581.456 kb on + strand at 581.456 kb on - strand at 581.456 kb on - strand at 581.456 kb on - strand at 581.456 kb on - strand at 581.456 kb on - strand at 581.550 kb on + strand at 581.550 kb on + strand at 581.550 kb on + strand at 581.551 kb on - strand at 581.551 kb on - strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.601 kb on - strand at 581.653 kb on + strand at 581.653 kb on + strand at 581.653 kb on + strand at 581.661 kb on + strand at 581.661 kb on + strand at 581.661 kb on + strand at 581.662 kb on - strand at 581.663 kb on + strand at 581.663 kb on + strand at 581.663 kb on + strand at 581.663 kb on + strand at 581.664 kb on - strand at 581.664 kb on - strand at 581.664 kb on - strand at 581.664 kb on - strand at 581.820 kb on + strand, within MPMX19_04234 at 581.910 kb on + strand, within MPMX19_04234 at 581.911 kb on - strand, within MPMX19_04234 at 581.911 kb on - strand, within MPMX19_04234 at 581.928 kb on + strand, within MPMX19_04234 at 581.929 kb on - strand, within MPMX19_04234 at 581.929 kb on - strand, within MPMX19_04234 at 582.006 kb on + strand, within MPMX19_04234 at 582.006 kb on + strand, within MPMX19_04234 at 582.007 kb on - strand, within MPMX19_04234 at 582.007 kb on - strand, within MPMX19_04234 at 582.030 kb on + strand, within MPMX19_04234 at 582.030 kb on + strand, within MPMX19_04234 at 582.030 kb on + strand, within MPMX19_04234 at 582.030 kb on + strand, within MPMX19_04234 at 582.030 kb on + strand, within MPMX19_04234 at 582.031 kb on - strand, within MPMX19_04234 at 582.031 kb on - strand, within MPMX19_04234 at 582.031 kb on - strand, within MPMX19_04234 at 582.045 kb on + strand, within MPMX19_04234 at 582.045 kb on + strand, within MPMX19_04234 at 582.045 kb on + strand, within MPMX19_04234 at 582.046 kb on - strand, within MPMX19_04234 at 582.046 kb on - strand, within MPMX19_04234 at 582.066 kb on + strand, within MPMX19_04234 at 582.066 kb on + strand, within MPMX19_04234 at 582.066 kb on + strand, within MPMX19_04234 at 582.066 kb on + strand, within MPMX19_04234 at 582.066 kb on + strand, within MPMX19_04234 at 582.066 kb on + strand, within MPMX19_04234 at 582.066 kb on + strand, within MPMX19_04234 at 582.067 kb on - strand, within MPMX19_04234 at 582.067 kb on - strand, within MPMX19_04234 at 582.067 kb on - strand, within MPMX19_04234 at 582.195 kb on + strand, within MPMX19_04234 at 582.195 kb on + strand, within MPMX19_04234 at 582.195 kb on + strand, within MPMX19_04234 at 582.195 kb on + strand, within MPMX19_04234 at 582.195 kb on + strand, within MPMX19_04234 at 582.195 kb on + strand, within MPMX19_04234 at 582.195 kb on + strand, within MPMX19_04234 at 582.196 kb on - strand, within MPMX19_04234 at 582.196 kb on - strand, within MPMX19_04234 at 582.196 kb on - strand, within MPMX19_04234 at 582.196 kb on - strand, within MPMX19_04234 at 582.196 kb on - strand, within MPMX19_04234 at 582.196 kb on - strand, within MPMX19_04234 at 582.196 kb on - strand, within MPMX19_04234 at 582.351 kb on + strand, within MPMX19_04234 at 582.351 kb on + strand, within MPMX19_04234 at 582.351 kb on + strand, within MPMX19_04234 at 582.352 kb on - strand, within MPMX19_04234 at 582.352 kb on - strand, within MPMX19_04234 at 582.352 kb on - strand, within MPMX19_04234 at 582.414 kb on + strand at 582.414 kb on + strand at 582.414 kb on + strand at 582.415 kb on - strand at 582.415 kb on - strand at 582.415 kb on - strand at 582.415 kb on - strand at 582.448 kb on - strand at 582.448 kb on - strand at 582.448 kb on - strand at 582.870 kb on + strand, within MPMX19_04235 at 582.870 kb on + strand, within MPMX19_04235 at 582.871 kb on - strand, within MPMX19_04235 at 583.023 kb on + strand, within MPMX19_04235 at 583.023 kb on + strand, within MPMX19_04235 at 583.023 kb on + strand, within MPMX19_04235 at 583.023 kb on + strand, within MPMX19_04235 at 583.023 kb on + strand, within MPMX19_04235 at 583.023 kb on + strand, within MPMX19_04235 at 583.023 kb on + strand, within MPMX19_04235 at 583.023 kb on + strand, within MPMX19_04235 at 583.024 kb on - strand, within MPMX19_04235 at 583.024 kb on - strand, within MPMX19_04235 at 583.161 kb on + strand, within MPMX19_04235 at 583.161 kb on + strand, within MPMX19_04235 at 583.161 kb on + strand, within MPMX19_04235 at 583.161 kb on + strand, within MPMX19_04235 at 583.161 kb on + strand, within MPMX19_04235 at 583.161 kb on + strand, within MPMX19_04235 at 583.161 kb on + strand, within MPMX19_04235 at 583.161 kb on + strand, within MPMX19_04235 at 583.161 kb on + strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 580,811 + MPMX19_04233 0.41 +1.1 580,811 + MPMX19_04233 0.41 -1.9 580,811 + MPMX19_04233 0.41 -1.0 580,812 - MPMX19_04233 0.41 -0.5 580,812 - MPMX19_04233 0.41 -1.3 580,812 - MPMX19_04233 0.41 -1.9 580,812 - MPMX19_04233 0.41 -1.9 581,160 + MPMX19_04233 0.70 -2.0 581,160 + MPMX19_04233 0.70 +0.5 581,160 + MPMX19_04233 0.70 +0.7 581,160 + MPMX19_04233 0.70 -0.3 581,160 + MPMX19_04233 0.70 +0.1 581,160 + MPMX19_04233 0.70 -1.3 581,161 - MPMX19_04233 0.70 -0.5 581,161 - MPMX19_04233 0.70 -1.1 581,161 - MPMX19_04233 0.70 -0.1 581,161 - MPMX19_04233 0.70 -0.1 581,161 - MPMX19_04233 0.70 -0.5 581,161 - MPMX19_04233 0.70 -1.0 581,161 - MPMX19_04233 0.70 -0.3 581,161 - MPMX19_04233 0.70 +1.9 581,161 - MPMX19_04233 0.70 +0.1 581,162 + MPMX19_04233 0.70 -0.2 581,162 + MPMX19_04233 0.70 -0.9 581,162 + MPMX19_04233 0.70 +0.5 581,162 + MPMX19_04233 0.70 +1.7 581,162 + MPMX19_04233 0.70 -1.9 581,162 + MPMX19_04233 0.70 -1.3 581,162 + MPMX19_04233 0.70 +1.1 581,163 - MPMX19_04233 0.70 -1.6 581,163 - MPMX19_04233 0.70 +0.5 581,163 - MPMX19_04233 0.70 -0.5 581,163 - MPMX19_04233 0.70 -2.5 581,163 - MPMX19_04233 0.70 -1.7 581,163 - MPMX19_04233 0.70 -0.5 581,163 - MPMX19_04233 0.70 -0.9 581,163 - MPMX19_04233 0.70 -0.1 581,163 - MPMX19_04233 0.70 -1.5 581,184 - MPMX19_04233 0.72 +0.0 581,184 - MPMX19_04233 0.72 -0.7 581,184 - MPMX19_04233 0.72 +2.5 581,184 - MPMX19_04233 0.72 -1.1 581,455 + -0.3 581,455 + -1.5 581,455 + -1.1 581,456 + -0.5 581,456 - -2.8 581,456 - +0.1 581,456 - +0.5 581,456 - -1.3 581,456 - -0.5 581,550 + +0.5 581,550 + -0.9 581,550 + -1.3 581,551 - -0.3 581,551 - +2.1 581,554 + -0.5 581,554 + -2.2 581,554 + -0.5 581,554 + -2.3 581,554 + -2.4 581,554 + +2.8 581,554 + -2.3 581,554 + -0.5 581,554 + -0.5 581,554 + -1.5 581,554 + -0.5 581,554 + +0.1 581,554 + -0.9 581,554 + -2.0 581,554 + +0.1 581,554 + +0.5 581,554 + +0.2 581,554 + -2.2 581,554 + -1.9 581,555 - +0.1 581,555 - -0.1 581,555 - -0.5 581,555 - -0.9 581,555 - -0.1 581,555 - -0.2 581,555 - -0.8 581,555 - -0.5 581,555 - -0.8 581,555 - -1.9 581,555 - -1.1 581,555 - +1.5 581,555 - -0.9 581,555 - -0.9 581,555 - -0.9 581,555 - -1.3 581,555 - +0.8 581,601 - +0.5 581,653 + +0.9 581,653 + +0.5 581,653 + -2.1 581,661 + -1.5 581,661 + +0.5 581,661 + -0.5 581,662 - -2.2 581,663 + -0.1 581,663 + -0.1 581,663 + -0.5 581,663 + -0.9 581,664 - -1.3 581,664 - -1.0 581,664 - +0.1 581,664 - -0.6 581,820 + MPMX19_04234 0.14 -0.3 581,910 + MPMX19_04234 0.27 -0.3 581,911 - MPMX19_04234 0.27 -1.1 581,911 - MPMX19_04234 0.27 -0.5 581,928 + MPMX19_04234 0.29 -1.1 581,929 - MPMX19_04234 0.30 +0.5 581,929 - MPMX19_04234 0.30 +0.5 582,006 + MPMX19_04234 0.40 -1.3 582,006 + MPMX19_04234 0.40 -0.3 582,007 - MPMX19_04234 0.41 -1.5 582,007 - MPMX19_04234 0.41 +0.2 582,030 + MPMX19_04234 0.44 -0.9 582,030 + MPMX19_04234 0.44 -1.1 582,030 + MPMX19_04234 0.44 -0.9 582,030 + MPMX19_04234 0.44 -0.1 582,030 + MPMX19_04234 0.44 -1.3 582,031 - MPMX19_04234 0.44 -0.5 582,031 - MPMX19_04234 0.44 +0.9 582,031 - MPMX19_04234 0.44 -0.4 582,045 + MPMX19_04234 0.46 -1.3 582,045 + MPMX19_04234 0.46 -1.5 582,045 + MPMX19_04234 0.46 -2.3 582,046 - MPMX19_04234 0.46 -0.5 582,046 - MPMX19_04234 0.46 -0.5 582,066 + MPMX19_04234 0.49 -1.3 582,066 + MPMX19_04234 0.49 -0.9 582,066 + MPMX19_04234 0.49 -1.3 582,066 + MPMX19_04234 0.49 -0.5 582,066 + MPMX19_04234 0.49 -1.4 582,066 + MPMX19_04234 0.49 +0.1 582,066 + MPMX19_04234 0.49 -0.5 582,067 - MPMX19_04234 0.49 +0.5 582,067 - MPMX19_04234 0.49 +1.8 582,067 - MPMX19_04234 0.49 -0.9 582,195 + MPMX19_04234 0.67 -0.6 582,195 + MPMX19_04234 0.67 -1.7 582,195 + MPMX19_04234 0.67 -1.3 582,195 + MPMX19_04234 0.67 -0.2 582,195 + MPMX19_04234 0.67 -1.1 582,195 + MPMX19_04234 0.67 -2.0 582,195 + MPMX19_04234 0.67 +0.1 582,196 - MPMX19_04234 0.67 -1.8 582,196 - MPMX19_04234 0.67 -1.1 582,196 - MPMX19_04234 0.67 +0.6 582,196 - MPMX19_04234 0.67 -0.6 582,196 - MPMX19_04234 0.67 -0.3 582,196 - MPMX19_04234 0.67 -0.9 582,196 - MPMX19_04234 0.67 -0.1 582,351 + MPMX19_04234 0.89 -0.1 582,351 + MPMX19_04234 0.89 +1.5 582,351 + MPMX19_04234 0.89 +1.1 582,352 - MPMX19_04234 0.89 -0.7 582,352 - MPMX19_04234 0.89 -1.1 582,352 - MPMX19_04234 0.89 -1.1 582,414 + -1.2 582,414 + +2.1 582,414 + +0.1 582,415 - +0.1 582,415 - -0.4 582,415 - -0.9 582,415 - +0.5 582,448 - -2.7 582,448 - -0.2 582,448 - -0.9 582,870 + MPMX19_04235 0.15 -0.6 582,870 + MPMX19_04235 0.15 -0.1 582,871 - MPMX19_04235 0.15 -2.7 583,023 + MPMX19_04235 0.28 -1.4 583,023 + MPMX19_04235 0.28 -0.9 583,023 + MPMX19_04235 0.28 +0.5 583,023 + MPMX19_04235 0.28 -1.7 583,023 + MPMX19_04235 0.28 +1.5 583,023 + MPMX19_04235 0.28 -0.1 583,023 + MPMX19_04235 0.28 -0.5 583,023 + MPMX19_04235 0.28 -0.1 583,024 - MPMX19_04235 0.28 +0.1 583,024 - MPMX19_04235 0.28 -0.9 583,161 + MPMX19_04235 0.40 -0.4 583,161 + MPMX19_04235 0.40 +1.5 583,161 + MPMX19_04235 0.40 -1.0 583,161 + MPMX19_04235 0.40 -1.5 583,161 + MPMX19_04235 0.40 +0.1 583,161 + MPMX19_04235 0.40 -0.6 583,161 + MPMX19_04235 0.40 -0.1 583,161 + MPMX19_04235 0.40 +0.9 583,161 + MPMX19_04235 0.40 -0.7 583,162 - MPMX19_04235 0.40 -1.9 583,162 - MPMX19_04235 0.40 -0.3 583,162 - MPMX19_04235 0.40 -1.1 583,162 - MPMX19_04235 0.40 -1.0 583,162 - MPMX19_04235 0.40 -1.7 583,162 - MPMX19_04235 0.40 -0.5 583,162 - MPMX19_04235 0.40 -1.9 583,162 - MPMX19_04235 0.40 -1.7 583,162 - MPMX19_04235 0.40 +0.7 583,162 - MPMX19_04235 0.40 +0.5 583,162 - MPMX19_04235 0.40 -1.0 583,162 - MPMX19_04235 0.40 -0.5 583,162 - MPMX19_04235 0.40 -2.1 583,162 - MPMX19_04235 0.40 -0.5 583,162 - MPMX19_04235 0.40 +0.5 583,162 - MPMX19_04235 0.40 +0.2
Or see this region's nucleotide sequence