Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03933

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03932 and MPMX19_03933 overlap by 4 nucleotidesMPMX19_03933 and MPMX19_03934 are separated by 31 nucleotides MPMX19_03932: MPMX19_03932 - hypothetical protein, at 211,585 to 212,691 _03932 MPMX19_03933: MPMX19_03933 - hypothetical protein, at 212,688 to 214,127 _03933 MPMX19_03934: MPMX19_03934 - hypothetical protein, at 214,159 to 215,154 _03934 Position (kb) 212 213 214 215Strain fitness (log2 ratio) -2 -1 0 1 2at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.745 kb on + strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.802 kb on - strand, within MPMX19_03932at 211.960 kb on + strand, within MPMX19_03932at 211.960 kb on + strand, within MPMX19_03932at 211.960 kb on + strand, within MPMX19_03932at 211.960 kb on + strand, within MPMX19_03932at 211.961 kb on - strand, within MPMX19_03932at 211.961 kb on - strand, within MPMX19_03932at 211.961 kb on - strand, within MPMX19_03932at 211.961 kb on - strand, within MPMX19_03932at 211.961 kb on - strand, within MPMX19_03932at 211.961 kb on - strand, within MPMX19_03932at 211.961 kb on - strand, within MPMX19_03932at 211.961 kb on - strand, within MPMX19_03932at 212.110 kb on + strand, within MPMX19_03932at 212.110 kb on + strand, within MPMX19_03932at 212.110 kb on + strand, within MPMX19_03932at 212.110 kb on + strand, within MPMX19_03932at 212.110 kb on + strand, within MPMX19_03932at 212.111 kb on - strand, within MPMX19_03932at 212.111 kb on - strand, within MPMX19_03932at 212.111 kb on - strand, within MPMX19_03932at 213.124 kb on + strand, within MPMX19_03933at 213.372 kb on + strand, within MPMX19_03933at 213.372 kb on + strand, within MPMX19_03933at 213.372 kb on + strand, within MPMX19_03933at 213.372 kb on + strand, within MPMX19_03933at 213.372 kb on + strand, within MPMX19_03933at 213.372 kb on + strand, within MPMX19_03933at 213.372 kb on + strand, within MPMX19_03933at 213.373 kb on - strand, within MPMX19_03933at 213.373 kb on - strand, within MPMX19_03933at 213.373 kb on - strand, within MPMX19_03933at 213.373 kb on - strand, within MPMX19_03933at 213.373 kb on - strand, within MPMX19_03933at 213.373 kb on - strand, within MPMX19_03933at 213.373 kb on - strand, within MPMX19_03933at 213.373 kb on - strand, within MPMX19_03933at 213.373 kb on - strand, within MPMX19_03933at 213.373 kb on - strand, within MPMX19_03933at 213.685 kb on - strand, within MPMX19_03933at 213.972 kb on + strand, within MPMX19_03933at 213.972 kb on + strand, within MPMX19_03933at 213.972 kb on + strand, within MPMX19_03933at 213.973 kb on - strand, within MPMX19_03933at 213.973 kb on - strand, within MPMX19_03933at 213.973 kb on - strand, within MPMX19_03933at 214.029 kb on + strandat 214.029 kb on + strandat 214.029 kb on + strandat 214.029 kb on + strandat 214.030 kb on - strandat 214.030 kb on - strandat 214.030 kb on - strandat 214.030 kb on - strandat 214.125 kb on + strandat 214.126 kb on - strandat 214.126 kb on - strandat 214.126 kb on - strandat 214.205 kb on + strandat 214.205 kb on + strandat 214.206 kb on - strandat 214.520 kb on + strand, within MPMX19_03934at 214.520 kb on + strand, within MPMX19_03934at 214.520 kb on + strand, within MPMX19_03934at 214.520 kb on + strand, within MPMX19_03934at 214.521 kb on - strand, within MPMX19_03934at 214.521 kb on - strand, within MPMX19_03934at 214.521 kb on - strand, within MPMX19_03934

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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211,744 + MPMX19_03932 0.14 +1.5
211,744 + MPMX19_03932 0.14 -0.1
211,744 + MPMX19_03932 0.14 -0.5
211,744 + MPMX19_03932 0.14 +0.5
211,744 + MPMX19_03932 0.14 -0.8
211,744 + MPMX19_03932 0.14 -0.5
211,744 + MPMX19_03932 0.14 -1.7
211,744 + MPMX19_03932 0.14 -1.6
211,744 + MPMX19_03932 0.14 -2.4
211,744 + MPMX19_03932 0.14 -0.9
211,744 + MPMX19_03932 0.14 -1.2
211,744 + MPMX19_03932 0.14 +1.5
211,744 + MPMX19_03932 0.14 -1.3
211,744 + MPMX19_03932 0.14 -0.1
211,744 + MPMX19_03932 0.14 -0.3
211,744 + MPMX19_03932 0.14 -0.3
211,744 + MPMX19_03932 0.14 -0.5
211,744 + MPMX19_03932 0.14 -1.3
211,744 + MPMX19_03932 0.14 +0.3
211,744 + MPMX19_03932 0.14 -0.1
211,744 + MPMX19_03932 0.14 -1.7
211,744 + MPMX19_03932 0.14 -0.8
211,744 + MPMX19_03932 0.14 +2.1
211,744 + MPMX19_03932 0.14 -0.5
211,745 + MPMX19_03932 0.14 -1.0
211,745 - MPMX19_03932 0.14 -0.8
211,745 - MPMX19_03932 0.14 -0.7
211,745 - MPMX19_03932 0.14 +0.5
211,745 - MPMX19_03932 0.14 -1.1
211,745 - MPMX19_03932 0.14 -0.6
211,745 - MPMX19_03932 0.14 -0.1
211,745 - MPMX19_03932 0.14 -0.8
211,745 - MPMX19_03932 0.14 +0.5
211,745 - MPMX19_03932 0.14 +0.6
211,745 - MPMX19_03932 0.14 -2.2
211,745 - MPMX19_03932 0.14 -0.5
211,745 - MPMX19_03932 0.14 -0.8
211,745 - MPMX19_03932 0.14 +0.5
211,745 - MPMX19_03932 0.14 +0.5
211,745 - MPMX19_03932 0.14 -1.1
211,745 - MPMX19_03932 0.14 -0.8
211,745 - MPMX19_03932 0.14 -0.3
211,745 - MPMX19_03932 0.14 -2.2
211,745 - MPMX19_03932 0.14 -1.7
211,802 - MPMX19_03932 0.20 -1.1
211,960 + MPMX19_03932 0.34 -1.7
211,960 + MPMX19_03932 0.34 +1.1
211,960 + MPMX19_03932 0.34 -0.5
211,960 + MPMX19_03932 0.34 -0.4
211,961 - MPMX19_03932 0.34 +0.7
211,961 - MPMX19_03932 0.34 -1.5
211,961 - MPMX19_03932 0.34 +0.1
211,961 - MPMX19_03932 0.34 +0.5
211,961 - MPMX19_03932 0.34 -2.2
211,961 - MPMX19_03932 0.34 +1.8
211,961 - MPMX19_03932 0.34 -2.4
211,961 - MPMX19_03932 0.34 -1.1
212,110 + MPMX19_03932 0.47 -0.5
212,110 + MPMX19_03932 0.47 -0.8
212,110 + MPMX19_03932 0.47 -0.8
212,110 + MPMX19_03932 0.47 -1.5
212,110 + MPMX19_03932 0.47 +1.0
212,111 - MPMX19_03932 0.48 -1.0
212,111 - MPMX19_03932 0.48 +0.1
212,111 - MPMX19_03932 0.48 +0.2
213,124 + MPMX19_03933 0.30 -0.1
213,372 + MPMX19_03933 0.47 +0.5
213,372 + MPMX19_03933 0.47 -0.1
213,372 + MPMX19_03933 0.47 +1.1
213,372 + MPMX19_03933 0.47 -1.3
213,372 + MPMX19_03933 0.47 -0.1
213,372 + MPMX19_03933 0.47 -0.8
213,372 + MPMX19_03933 0.47 -1.3
213,373 - MPMX19_03933 0.48 -0.5
213,373 - MPMX19_03933 0.48 -1.2
213,373 - MPMX19_03933 0.48 -1.0
213,373 - MPMX19_03933 0.48 +1.5
213,373 - MPMX19_03933 0.48 -0.8
213,373 - MPMX19_03933 0.48 +0.5
213,373 - MPMX19_03933 0.48 -0.2
213,373 - MPMX19_03933 0.48 -0.3
213,373 - MPMX19_03933 0.48 -1.3
213,373 - MPMX19_03933 0.48 +0.5
213,685 - MPMX19_03933 0.69 -1.6
213,972 + MPMX19_03933 0.89 -2.1
213,972 + MPMX19_03933 0.89 -0.8
213,972 + MPMX19_03933 0.89 +0.7
213,973 - MPMX19_03933 0.89 -1.5
213,973 - MPMX19_03933 0.89 -1.3
213,973 - MPMX19_03933 0.89 -0.5
214,029 + +0.9
214,029 + -1.0
214,029 + +0.7
214,029 + -0.8
214,030 - -0.9
214,030 - +1.5
214,030 - -0.3
214,030 - -0.1
214,125 + -0.1
214,126 - -0.7
214,126 - -0.8
214,126 - -1.2
214,205 + -1.4
214,205 + -0.5
214,206 - -1.3
214,520 + MPMX19_03934 0.36 +0.5
214,520 + MPMX19_03934 0.36 -0.5
214,520 + MPMX19_03934 0.36 +0.9
214,520 + MPMX19_03934 0.36 +0.3
214,521 - MPMX19_03934 0.36 -0.3
214,521 - MPMX19_03934 0.36 -2.0
214,521 - MPMX19_03934 0.36 +0.2

Or see this region's nucleotide sequence